other hairpins
novel_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH (8 loci)
sblock1358 [novel_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.35/0.48 | 18/23/0.79 | 0.0 0.0 0.0 0.0 | 0.8 0.0 0.0 0.5 | 11 1 1 2 | 0 0 0 0 | 3 1 1 1 | 0 0 0 0 | 9 42 50 30 | 23 -7 -17 -3 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 6 6 6 6 | nd nd nd nd | 0.35 0.55 0.50 0.35 | 7 6 6 3 | 19 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------CAUCAUU------------------------------------------------------------------------------------------- | 15 | novel | ||
| seed | -----------------------------------------------------------ACAAGCA------------------------------------------ | 2 | novel | ||
| seed | ---------------------------------------------------GCUUCUU-------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------ACACCAA---------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| ---------TCATCATTGTTTCTGCCTTG------------------------------------------------------------------------------- | 20 | 1 | - | 8 | |
| ---------TCATCATTGTTTCTGCCTTGGCC---------------------------------------------------------------------------- | 23 | - | - | 3 | |
| ---------TCATCATTGTTTCTGCCTT-------------------------------------------------------------------------------- | 19 | - | 1 | 1 | |
| --------------------------------------------------TGCTTCTTTACAAGCAGTTTGA------------------------------------ | 22 | - | - | 1 | |
| ------------------------------------------TACACCAATGCTTCTTTACA---------------------------------------------- | 20 | 1 | - | - | |
| ----------------------------------------------------------TACAAGCAGTTTGATGGCCA------------------------------ | 20 | - | - | 1 | |
| ----------------------------------------------------------TACAAGCAGTTTGATGGCC------------------------------- | 19 | - | - | 1 | |
| ---------TCATCATTGTTTCTGCCT--------------------------------------------------------------------------------- | 18 | - | 1 | - | |
| rat | tgtcgaccaTCATCATTGTTTCTGCCTTGGCCatgtgtggcctacaccaatgcttctttacaagcagtttgatggccatgggactgctagggaggtgatgatgtgata | ||||
| ************************************************************************************************************ | |||||
| rat | (((((..((((((((((.......(((((((.....((((((..((....(((((......)))))...))..))))))......))))))).))))))))))))))) | 0.780 -36.90 | |||
| rat | chromosome:1:47986299:47986406:1 | intergenic |
sblock9354 [novel_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.201 | no | no | 0.37/0.45 | 19/20/0.88 | 1.5 0.0 | 2.0 0.0 | 2 9 | 0 0 | 1 3 | 0 0 | 1 30 | 29 3 | 5arm 3arm | 1 1 | nd nd | 0.37 0.35 | 6 4 | 16 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------ACUAAAC------------------------------------------ | 14 | novel | ||
| seed | -----GAAGUAU-------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --CUUGAAG----------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------------------TACTAAACAGTCCAACCTTG------------------------------ | 20 | 2 | 2 | 9 | |
| -TCTTGAAGTATGTCTTTCC------------------------------------------------------------------------------------------ | 19 | - | - | 1 | |
| ----TGAAGTATGTCTTTCCTGGG-------------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| ------------------------------------------------------------TACTAAACAGTCCAACCTT------------------------------- | 19 | - | 1 | - | |
| rat | ttcttgaagtatgtctttcctgggcttaggtgcccttgtgactgtgtgtggaaggggttgTACTAAACAGTCCAACCTTGcctgtcccagctctctgttgtatattgaga | ||||
| ************************************************************************************************************** | |||||
| rat | .((((((.(((((......(((((..(((((....(((.((((((..(((.((....)).)))...)))))))))....))))).)))))........))))).)))))) | 0.760 -30.04 | |||
| rat | chromosome:5:79197245:79197354:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (8 loci)
sblock11701 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.059 | no | no | 0.26/0.37 | 19/25/0.12 | 0.0 0.9 0.0 | 0.0 2.0 0.0 | 1 7 55 | 0 0 0 | 1 3 2 | 0 0 0 | 22 27 20 | -10 -16 -2 | 5arm_loop 3arm_loop 3arm_loop | 1 1 1 | nd nd nd | 0.60 0.65 0.37 | 11 12 3 | 69 | 4 | 0 | 3 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------UCAAUUA------------------------------- | 58 | novel | |||
| seed | -----------------------------------------GAACAAG------------------------------------------ | 7 | novel | |||
| seed | --------------------------------------AAUGAAC--------------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------AACAAGA----------------------------------------- | 1 | novel | |||
| seed | -----------------------GCUAGAG------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T5S1 | |||
| ---------------------------------------------------CTCAATTATTCTAGCTGCA-------------------- | 19 | - | 3 | - | 55 | |
| ----------------------------------------TGAACAAGAAACTCAATTATTCT--------------------------- | 23 | 1 | - | 1 | 5 | |
| -------------------------------------TAATGAACAAGAAACTCAA---------------------------------- | 19 | - | - | - | 2 | |
| -----------------------------------------GAACAAGAAACTCAATTATTCT--------------------------- | 22 | - | - | - | 1 | |
| ----------------------AGCTAGAGATCTTTGTAATGAACAA------------------------------------------- | 25 | - | - | - | 1 | |
| rat | tgctgaagaatttagagtattcagctagagatctttgtaatgaacaagaaaCTCAATTATTCTAGCTGCAttatccaacgtctcaggcat | |||||
| ****************************************************************************************** | ||||||
| rat | ((((..(((.....((.....(((((((((....(((................)))...))))))))).....)).....)))..)))). | 0.780 -19.29 | ||||
| rat | chromosome:8:57742967:57743056:-1 | intergenic |
sblock4957 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.050 | no | no | 0.53/0.61 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 48 | 0 0 | 1 8 | 0 0 | 0 23 | 24 -4 | 5arm 3arm_loop | 1 2 | nd nd | 0.33 0.56 | 3 4 | 57 | 8 | 0 | 15 |
| reads | miRBase family seed | |||||||||
| seed | --------------------------------------------CCCCAGA--------------------------------- | 56 | novel | |||||||
| seed | -CAGUGUC---------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------TCCCCAGAGTTTCCCAAC----------------------- | 18 | 19 | 8 | 1 | 1 | 3 | 7 | 6 | 8 | |
| -------------------------------------------TCCCCAGAGTTTCCCAACT---------------------- | 19 | - | 1 | 1 | - | - | 1 | - | - | |
| TCAGTGTCATGGGCTGCC------------------------------------------------------------------ | 18 | - | - | - | - | - | 1 | - | - | |
| rat | tcagtgtcatgggctgcccttacgatgttctctggccctctgcTCCCCAGAGTTTCCCAACtatgtcccggcctactatgacct | |||||||||
| ************************************************************************************ | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042090 ENSRNOG00000019504 Adprhl1 | |||||||||
| rat | ..((.(((((((...(((.....(((((....(((..(((((.....)))))....)))...)))))..)))...))))))))) | 0.970 -22.10 | ||||||||
| rat | chromosome:16:81169828:81169911:1 | Same_strand|Boundary_non-coding|ENSRNOT00000026392|ENSRNOG00000019504 ## Same_strand|Intronic_coding|ENSRNOT00000042090|ENSRNOG00000019504 ## ENSRNOG00000019504|protein_coding|Adprhl1|[Protein ADP-ribosylarginine] hydrolase-like protein 1 (ADP- ribosylhydrolase 2). [Source:UniProtKB/Swiss-Prot;Acc:Q5XIB3] |
sblock8012 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.385 | no | no | 0.30/0.42 | 19/24/0.29 | 0.7 0.0 0.0 0.0 | 2.3 0.0 0.0 0.0 | 3 13 33 5 | 0 0 0 0 | 2 3 5 2 | 0 0 0 0 | 0 28 17 7 | 28 6 -1 9 | 5arm 5arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.71 0.40 0.32 0.32 | 11 4 3 3 | 72 | 7 | -7 | -7 |
| reads | miRBase family seed | ||||||||
| seed | -------------------------------------------------------------ACACUCU---------------------------- | 45 | novel | ||||||
| seed | -----------------------------UCAUUAC------------------------------------------------------------ | 18 | novel | ||||||
| seed | -----------------------------------------------------------------------GUCUACU------------------ | 6 | novel | ||||||
| seed | -UCCUCAG---------------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | ---CUCAGAA-------------------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------TACACTCTCTTGTCTACTT----------------- | 19 | 3 | - | 2 | 1 | - | 33 | 3 | |
| ----------------------------GTCATTACAGTTCTTTAAGA------------------------------------------------ | 20 | - | 2 | - | - | 1 | 13 | - | |
| ----------------------------------------------------------------------TGTCTACTTTAAACAGGTT------- | 19 | 1 | - | - | - | - | 5 | - | |
| ------------------------------------------------------------TACACTCTCTTGTCTACTTTA--------------- | 21 | - | - | - | - | - | 2 | - | |
| TTCCTCAGAATAATGCCCA----------------------------------------------------------------------------- | 19 | - | - | - | - | - | 2 | - | |
| --CCTCAGAATAATGCCCATTTCCTT---------------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | |
| ----------------------------GTCATTACAGTTCTTTAAGATCG--------------------------------------------- | 23 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------TACACTCTCTTGTCTACTTTAAA------------- | 23 | - | - | - | - | - | 1 | - | |
| ----------------------------GTCATTACAGTTCTTTAAG------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| rat | ttcctcagaataatgcccatttccttatGTCATTACAGTTCTTTAAGAtcgtgttgcaaaTACACTCTCTTGTCTACTTtaaacaggttatttggc | ||||||||
| ************************************************************************************************ | |||||||||
| rat | ..............(((.((..((...(((..(((.(((....(((((..((((.......))))..)))))...))).))))))))..))..))) | 0.620 -12.70 | |||||||
| rat | chromosome:3:76955623:76955718:1 | intergenic |
sblock8501 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.475 | no | no | 0.38/0.55 | 18/25/0.38 | 0.0 0.0 | 0.0 0.0 | 20 3 | 0 0 | 5 1 | 0 0 | 20 7 | -9 3 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.56 0.38 | 6 2 | 50 | 5 | 5 | 0 |
| reads | miRBase family seed | ||||||
| seed | ---------------------GGACCAU-------------------------------------------- | 35 | novel | ||||
| seed | -----------------------ACCAUGU------------------------------------------ | 6 | novel | ||||
| seed | ---------------------------------------------AGGACGG-------------------- | 3 | novel | ||||
| seed | --------------------UGGACCA--------------------------------------------- | 2 | novel | ||||
| seed | ----------------CCCCUGG------------------------------------------------- | 2 | miR-331 | ||||
| seed | ----------------------------GUGAAAC------------------------------------- | 1 | novel | ||||
| seed | ------------------------------GAAACAG----------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T5S1 | |||
| --------------------TGGACCATGTGAAACAGCTAATGTT--------------------------- | 25 | 1 | - | 1 | 1 | 20 | |
| --------------------TGGACCATGTGAAACAGCT--------------------------------- | 19 | 1 | 1 | - | - | 4 | |
| ----------------------GACCATGTGAAACAGCTAATGTT--------------------------- | 23 | 1 | - | - | - | 3 | |
| --------------------TGGACCATGTGAAACAGCTAATG----------------------------- | 23 | - | - | - | - | 3 | |
| --------------------------------------------TAGGACGGGTAAGGGATTTCA------- | 21 | - | - | - | - | 3 | |
| ---------------TCCCCTGGACCATGTGAAACAG----------------------------------- | 22 | - | - | - | - | 2 | |
| -------------------CTGGACCATGTGAAACAGCT--------------------------------- | 20 | - | 1 | - | - | 1 | |
| ----------------------GACCATGTGAAACAGCTAAT------------------------------ | 20 | - | - | - | - | 1 | |
| --------------------TGGACCATGTGAAACAGC---------------------------------- | 18 | - | - | - | 1 | - | |
| -----------------------------TGAAACAGCTAATGTTAGGAC---------------------- | 21 | - | - | - | - | 1 | |
| --------------------TGGACCATGTGAAACAGCTAATGT---------------------------- | 24 | 1 | - | - | - | - | |
| --------------------TGGACCATGTGAAACAGCTAAT------------------------------ | 22 | - | 1 | - | - | - | |
| ---------------------------TGTGAAACAGCTAATGTTAGGAC---------------------- | 23 | - | - | - | - | 1 | |
| ----------------------GACCATGTGAAACAGCTAA------------------------------- | 19 | - | - | - | - | 1 | |
| rat | ggtagggggtttctctccccTGGACCATGTGAAACAGCTAATGTTaggacgggtaagggatttcataatgct | ||||||
| ************************************************************************ | |||||||
| ---------------------------------------------------------------------------------- | ENSRNOT00000057549 ENSRNOG00000037878 | ||||||
| rat | ((((...((..(((((..((((..((......((((.....)))).)).))))..)))))..))....)))) | 0.450 -16.90 | |||||
| rat | chromosome:4:119335551:119335622:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057549|ENSRNOG00000037878 ## ENSRNOG00000037878|protein_coding|| |
sblock8749 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.679 | no | no | 0.47/0.61 | 18/24/0.18 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 37 1 | 0 0 0 | 1 5 1 | 0 0 0 | 25 32 25 | 2 -5 5 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.47 0.53 0.33 | 3 5 2 | 55 | 5 | 8 | 0 |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------GAGCACG----------------------------------------------------------- | 50 | novel | ||||
| seed | ---------------------------------------GGAUGCU----------------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------------GGACUGA----------------------------------- | 1 | novel | ||||
| seed | --------------------------CGGGUAU------------------------------------------------------------------ | 1 | novel | ||||
| seed | -------------------------------AUGAGCA------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------TGAGCACGGATGCTAAGCA------------------------------------------------ | 19 | 2 | 1 | 1 | 37 | 1 | |
| --------------------------------TGAGCACGGATGCTAAGCAAGC--------------------------------------------- | 22 | - | - | - | 3 | - | |
| --------------------------------TGAGCACGGATGCTAAGCAAGCAA------------------------------------------- | 24 | - | - | - | 2 | - | |
| --------------------------------------CGGATGCTAAGCAAGCAATGGAC-------------------------------------- | 23 | - | - | - | 2 | - | |
| --------------------------------TGAGCACGGATGCTAAGCAAGCA-------------------------------------------- | 23 | - | - | - | 2 | - | |
| --------------------------------------------------------TGGACTGACAGACTCCCC------------------------- | 18 | - | - | 1 | - | - | |
| -------------------------TCGGGTATGAGCACGGATG------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| --------------------------------TGAGCACGGATGCTAAGCAAG---------------------------------------------- | 21 | - | - | - | 1 | - | |
| ------------------------------TATGAGCACGGATGCTAAG-------------------------------------------------- | 19 | - | - | - | 1 | - | |
| rat | tttgtggagggaggactggtgagggtcgggtaTGAGCACGGATGCTAAGCAagcaatggactgacagactcccccaggcctgaagatttgtcccagcaa | ||||||
| *************************************************************************************************** | |||||||
| rat | .((((...((((((.((((...(((((..((...((..((..((((.....)))).))..)).)).)))))..)))).))..........)))).)))) | 0.620 -25.90 | |||||
| rat | chromosome:4:164241398:164241496:-1 | intergenic |
sblock9142 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.497 | no | no | 0.26/0.53 | 18/26/0.66 | 1.0 0.6 0.7 4.5 | 2.0 0.4 0.2 3.7 | 18 5 53 13 | 0 0 0 0 | 4 4 7 4 | 0 0 0 0 | 33 46 30 0 | -7 -16 -8 7 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.37 0.58 0.45 0.32 | 2 9 4 3 | 122 | 7 | 0 | 3 |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------GAUAUCU------------------------------------------- | 52 | novel | ||||||
| seed | -----------------------------------------------------CCUGAUA---------------------------------------------- | 16 | novel | ||||||
| seed | ----------------------------------CCUGACU----------------------------------------------------------------- | 14 | novel | ||||||
| seed | -------------------------------------GACUGGC-------------------------------------------------------------- | 8 | novel | ||||||
| seed | ----------------------------------------------------------------------CCUGUUA----------------------------- | 6 | novel | ||||||
| seed | -----------------------------------------------------------AUCUUAA---------------------------------------- | 5 | novel | ||||||
| seed | -------------------------------------------------GAAUCCU-------------------------------------------------- | 3 | novel | ||||||
| seed | -----------------------------------------GGCCGUU---------------------------------------------------------- | 3 | novel | ||||||
| seed | ----------------------------------------------------------------------------AAUCCAC----------------------- | 3 | novel | ||||||
| seed | ------------------------------------------------UGAAUCC--------------------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------------------------------ACCUAUG---------------- | 1 | novel | ||||||
| seed | ---------------------------------UCCUGAC------------------------------------------------------------------ | 1 | miR-378* | ||||||
| seed | ------------------------------------------------------CUGAUAU--------------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------------------UUCCUGU------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------AUAUCUU------------------------------------------ | 1 | novel | ||||||
| seed | --------------------------------------ACUGGCC------------------------------------------------------------- | 1 | miR-193 | ||||||
| seed | ----------------------------------------------------------UAUCUUA----------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------------CCACACC-------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------UUGAAUC---------------------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------------------------------CACACCU------------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------------UCUUAAC--------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T5S1 | |||
| -------------------------------------------------------TGATATCTTAACGTTCCTGT------------------------------- | 20 | 2 | 2 | 1 | 1 | 1 | - | 40 | |
| ---------------------------------TCCTGACTGGCCGTTTGAA------------------------------------------------------ | 19 | 1 | 1 | - | - | - | - | 12 | |
| ----------------------------------------------------TCCTGATATCTTAACGTTCCTGTT------------------------------ | 24 | - | - | - | - | - | - | 13 | |
| ------------------------------------TGACTGGCCGTTTGAATCCTGA------------------------------------------------ | 22 | - | 1 | - | 1 | - | - | 6 | |
| ----------------------------------------------------------TATCTTAACGTTCCTGTTA----------------------------- | 19 | - | - | - | - | - | - | 5 | |
| ----------------------------------------------------TCCTGATATCTTAACGTTCCT--------------------------------- | 21 | - | 1 | - | - | - | 1 | 1 | |
| ---------------------------------------------------------------------------TAATCCACACCTATGTTTG------------ | 19 | - | - | - | - | - | - | 3 | |
| ---------------------------------------------------------------------TCCTGTTAATCCACACCTATGTTT------------- | 24 | 1 | - | - | - | - | - | 2 | |
| ------------------------------------------------TGAATCCTGATATCTTAAC--------------------------------------- | 19 | 1 | 2 | - | - | - | - | - | |
| ----------------------------------------TGGCCGTTTGAATCCTGAT----------------------------------------------- | 19 | - | - | - | - | - | - | 3 | |
| -------------------------------------------------------TGATATCTTAACGTTCCT--------------------------------- | 18 | - | - | - | 1 | - | - | 1 | |
| ---------------------------------------------------------------------TCCTGTTAATCCACACCTA------------------ | 19 | - | - | - | - | - | 1 | 1 | |
| -------------------------------------------------------TGATATCTTAACGTTCCTG-------------------------------- | 19 | - | 2 | - | - | - | - | - | |
| -----------------------------------------------------------ATCTTAACGTTCCTGTTAA---------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -----------------------------------------------TTGAATCCTGATATCTTAAC--------------------------------------- | 20 | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------------CACCTATGTTTGCGGTATAACACT | 24 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------CCACACCTATGTTTGCGGT-------- | 19 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------ATATCTTAACGTTCCTGTT------------------------------ | 19 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------TCCTGTTAATCCACACCTAT----------------- | 20 | - | 1 | - | - | - | - | - | |
| -------------------------------------GACTGGCCGTTTGAATCCTGA------------------------------------------------ | 21 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------TCCACACCTATGTTTGCGGT-------- | 20 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------GTTCCTGTTAATCCACACC-------------------- | 19 | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------CCTGATATCTTAACGTTCCTGT------------------------------- | 22 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------TGATATCTTAACGTTCCTGTTAATCC------------------------- | 26 | - | - | - | - | - | - | 1 | |
| ----------------------------------------------TTTGAATCCTGATATCTTA----------------------------------------- | 19 | - | - | 1 | - | - | - | - | |
| --------------------------------------------------------GATATCTTAACGTTCCTGT------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| --------------------------------TTCCTGACTGGCCGTTTGA------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| rat | gctgccagccttcttatttactttccttggtgtTCCTGACTGGCCGTTTGAATCCTGATATCTTAACGTTCCTGTTaatccacacctatgtttgcggtataacact | ||||||||
| ********************************************************************************************************** | |||||||||
| rat | (((((.(((...................(((((...((((.((.((((.((.........))..))))..)).))))....)))))...))).)))))........ | 0.620 -16.65 | |||||||
| rat | chromosome:4:164281307:164281412:1 | intergenic |
sblock9274 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.173 | no | no | 0.21/0.60 | 18/23/0.07 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 322 1 | 0 0 0 | 1 8 1 | 0 0 0 | 28 43 27 | 11 -4 5 | 5arm 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.37 0.68 0.35 | 3 5 2 | 406 | 8 | 9 | 0 |
| reads | miRBase family seed | |||||||||
| seed | --------------------------------------------AUGCUUA------------------------------------------------------------------ | 360 | novel | |||||||
| seed | ---------------------------------------UCUUGAU----------------------------------------------------------------------- | 15 | novel | |||||||
| seed | ----------------------------------------------GCUUACA---------------------------------------------------------------- | 10 | novel | |||||||
| seed | -------------------------------------------GAUGCUU------------------------------------------------------------------- | 10 | novel | |||||||
| seed | -------------------------------------------------UACAAAA------------------------------------------------------------- | 3 | novel | |||||||
| seed | ----------------------------------------CUUGAUG---------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -----------------------------------------------CUUACAA--------------------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------------------------------CAAAAUG----------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------GUGCUGG--------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------------------------CAAGACC--------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------------------------UGCUUAC----------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------UCUCUUG------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------GATGCTTACAAAATGTATT------------------------------------------------------- | 19 | 15 | 7 | 3 | 2 | 4 | 2 | 322 | 3 | |
| --------------------------------------CTCTTGATGCTTACAAAATGT---------------------------------------------------------- | 21 | - | - | - | - | - | - | 12 | - | |
| ------------------------------------------TGATGCTTACAAAATGTAT-------------------------------------------------------- | 19 | - | - | - | - | - | - | 10 | - | |
| ---------------------------------------------TGCTTACAAAATGTATTATC---------------------------------------------------- | 20 | 1 | - | - | - | - | - | 9 | - | |
| ------------------------------------------------TTACAAAATGTATTATCCA-------------------------------------------------- | 19 | - | - | - | - | - | - | 3 | - | |
| ---------------------------------------TCTTGATGCTTACAAAATGT---------------------------------------------------------- | 20 | - | - | - | - | - | - | 2 | - | |
| --------------------------------------CTCTTGATGCTTACAAAATG----------------------------------------------------------- | 20 | - | - | - | - | - | - | 2 | - | |
| ------------------------------------TTCTCTTGATGCTTACAAAATGT---------------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| ----------------------------TGTGCTGGTTCTCTTGATG---------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------GATGCTTACAAAATGTATTATC---------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------GATGCTTACAAAATGTAT-------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------CCAAGACCAAAGGAGGCAGG--------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------ATGCTTACAAAATGTATTA------------------------------------------------------ | 19 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------ACAAAATGTATTATCCATGTC---------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------GCTTACAAAATGTATTATC---------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CTCTTGATGCTTACAAAAT------------------------------------------------------------ | 19 | - | - | - | - | - | - | 1 | - | |
| rat | tccaggacatgcaaaatccttgctcctatgtgctggttctcttGATGCTTACAAAATGTATTatccatgtccaagaccaaaggaggcaggatataaaaaggagggatctgggctgga | |||||||||
| ********************************************************************************************************************* | ||||||||||
| rat | (((((..((......((((((.((..(((((.(((.(((..(((...(((.....(((.......)))....)))..)))..))).))).)))))...)).)))))).))..))))) | 0.530 -29.90 | ||||||||
| rat | chromosome:5:25426915:25427031:-1 | intergenic |
sblock9679 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.232 | no | no | 0.21/0.60 | 18/23/0.07 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 7 1 322 1 | 0 0 0 0 | 2 1 8 1 | 0 0 0 0 | 3 32 47 26 | 40 11 -4 5 | 5arm 5arm 5arm_loop_3arm 3arm | 1 2 2 2 | nd nd nd nd | 0.53 0.37 0.68 0.35 | 10 3 5 2 | 415 | 8 | 9 | 0 |
| reads | miRBase family seed | |||||||||
| seed | ------------------------------------------------AUGCUUA----------------------------------------------------------------- | 360 | novel | |||||||
| seed | -------------------------------------------UCUUGAU---------------------------------------------------------------------- | 15 | novel | |||||||
| seed | --------------------------------------------------GCUUACA--------------------------------------------------------------- | 10 | novel | |||||||
| seed | -----------------------------------------------GAUGCUU------------------------------------------------------------------ | 10 | novel | |||||||
| seed | ----UCCAGAA------------------------------------------------------------------------------------------------------------- | 8 | novel | |||||||
| seed | -----------------------------------------------------UACAAAA------------------------------------------------------------ | 3 | novel | |||||||
| seed | --------------------------------------------CUUGAUG--------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ---------------------------------------------------------------------------CAAGACC-------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------------------------------CUUACAA-------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------------------------CAAAAUG---------------------------------------------------------- | 1 | novel | |||||||
| seed | --CUUCCAG--------------------------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------------------UGCUUAC---------------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------UCUCUUG------------------------------------------------------------------------ | 1 | novel | |||||||
| seed | ---------------------------------GUGCUGG-------------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------GATGCTTACAAAATGTATT------------------------------------------------------ | 19 | 15 | 7 | 3 | 2 | 4 | 2 | 322 | 3 | |
| ------------------------------------------CTCTTGATGCTTACAAAATGT--------------------------------------------------------- | 21 | - | - | - | - | - | - | 12 | - | |
| -------------------------------------------------TGCTTACAAAATGTATTATC--------------------------------------------------- | 20 | 1 | - | - | - | - | - | 9 | - | |
| ----------------------------------------------TGATGCTTACAAAATGTAT------------------------------------------------------- | 19 | - | - | - | - | - | - | 10 | - | |
| ---TTCCAGAATATGCAAAATC-------------------------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | 7 | - | |
| ----------------------------------------------------TTACAAAATGTATTATCCA------------------------------------------------- | 19 | - | - | - | - | - | - | 3 | - | |
| -------------------------------------------TCTTGATGCTTACAAAATGT--------------------------------------------------------- | 20 | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------CTCTTGATGCTTACAAAATG---------------------------------------------------------- | 20 | - | - | - | - | - | - | 2 | - | |
| --------------------------------------------------GCTTACAAAATGTATTATC--------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------CTCTTGATGCTTACAAAAT----------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| --------------------------------TGTGCTGGTTCTCTTGATG--------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------GATGCTTACAAAATGTATTATC--------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------TTCTCTTGATGCTTACAAAATGT--------------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------GATGCTTACAAAATGTAT------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------ATGCTTACAAAATGTATTA----------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------CCAAGACCAAAGGAGGCAGG-------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -CCTTCCAGAATATGCAAAA---------------------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------ACAAAATGTATTATCCATGTC--------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| rat | cccttccagaatatgcaaaatccttgctcctatgtgctggttctcttGATGCTTACAAAATGTATTatccatgtccaagaccaaaggaggcaggatataaaaaggagggatctgggctgg | |||||||||
| ************************************************************************************************************************ | ||||||||||
| rat | ((..((((((..........(((((.((..(((((.(((.(((..(((...(((.....(((.......)))....)))..)))..))).))).)))))...)).)))))))))))..)) | 0.560 -29.50 | ||||||||
| rat | chromosome:5:25626551:25626670:1 | intergenic |
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