other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (8 loci)
novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK (8 loci)
block999055 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.36/0.42 | 19/26/0.40 | 6.7 0.0 | 3.7 0.0 | 3 2 | 0 0 | 1 1 | 0 0 | 25 44 | -2 -8 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.19 0.47 | 2 4 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------GAGAAUU-------------------------------------------------------------------- | 2 | novel |
| seed | ---------------------------------------------GGGUUUA----------------------------------------------------------- | 2 | novel |
| seed | --------------------------GCUGAGG------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------TGGGTTTAAGTGTGAACGT------------------------------------------------ | 19 | 2 | |
| -----------------------------------TGAGAATTGTGGGTTTAAGTGT------------------------------------------------------ | 22 | 1 | |
| -----------------------------------TGAGAATTGTGGGTTTAAGTG------------------------------------------------------- | 21 | 1 | |
| -------------------------TGCTGAGGTTTGAGAATTGTGGGTTT------------------------------------------------------------ | 26 | 1 | |
| rat | gtacgtactgtgggggcaggtgcacTGCTGAGGTTTGAGAATTGTGGGTTTAAGTGTGAACGTagcctggttctttgacctcagtttcctcatttgtaaacaagttttact | ||
| *************************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||
| rat | (((...(((.((...(((((((....(((((((((.(((((((..(((((...((....))..)))))))))))).))))))))).....)))))))...)))))..))). | 0.830 -37.40 |
| rat | chromosome:1:129047574:129047684:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
block1060622 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.42/0.48 | 18/25/0.33 | 0.0 0.0 3.4 | 0.0 0.0 1.7 | 1 1 7 | 0 0 0 | 1 1 3 | 0 0 0 | 48 53 11 | -10 -15 -4 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.68 0.63 0.10 | 6 6 1 | 9 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------GAAGGAU--------------------------------- | 4 | novel | |||
| seed | -------------------------------------------------------------------UAACAUC-------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------ACAUCUG------------------------ | 1 | novel | |||
| seed | -------------------------------------------------UGCUUGC-------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------GCCCAUG--------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------AACAUCU------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| -----------------------------------------------------------TGAAGGATTAACATCTGTCCCACTC---------------- | 25 | - | - | - | 3 | |
| -----------------------------------------------------TGCCCATGAAGGATTAACA---------------------------- | 19 | - | - | - | 1 | |
| -----------------------------------------------------------TGAAGGATTAACATCTGTCCC-------------------- | 21 | - | - | - | 1 | |
| -------------------------------------------------------------------TAACATCTGTCCCACTCTTG------------- | 20 | - | - | - | 1 | |
| --------------------------------------------------------------------AACATCTGTCCCACTCTTGTC----------- | 21 | 1 | - | - | - | |
| ------------------------------------------------------------------TTAACATCTGTCCCACTC---------------- | 18 | - | - | 1 | - | |
| ------------------------------------------------ATGCTTGCCCATGAAGGAT--------------------------------- | 19 | - | 1 | - | - | |
| rat | atcactgtttgtctcccatttgttcccaaggacaagagtggggacaagATGCTTGCCCATGAAGGATTAACATCTGTCCCACTCTTGTCccaaacaggac | |||||
| **************************************************************************************************** | ||||||
| rat | .((.(((((((..................((((((((((((((...(((((....((......)).....))))).))))))))))))))))))))))). | 0.450 -39.76 | ||||
| rat | chromosome:20:5511474:5511573:-1 | intergenic |
block841930 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.21/0.40 | 19/26/0.57 | 2.5 1.7 0.0 | 1.0 1.7 0.0 | 2 3 2 | 0 0 0 | 2 2 1 | 0 0 0 | 43 43 36 | -14 -20 5 | 5arm_loop_3arm 3arm_loop 3arm | 3 5 5 | nd nd nd | 0.42 0.42 0.25 | 4 4 3 | 7 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------GUGAUAU------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------UGAUUAU------------------------------------------------------------ | 1 | novel | ||
| seed | -------------------------------------------------GGUUUGA---------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------CCCACGG--------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------UAUAUGU-------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------GAUUAUA----------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------------------------------------------------TGTGATATCTTAGGCTCTGT------------------------------------ | 20 | - | - | 2 | |
| ------------------------------------------------CGGTTTGATTATATGTTGT----------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------TTGATTATATGTTGTGATATCTT--------------------------------------------- | 23 | - | - | 1 | |
| -----------------------------------------------------TGATTATATGTTGTGATAT------------------------------------------------ | 19 | 1 | - | - | |
| -------------------------------------------TCCCACGGTTTGATTATATGTTGTGA--------------------------------------------------- | 26 | - | - | 1 | |
| --------------------------------------------------------TTATATGTTGTGATATCTTAG------------------------------------------- | 21 | - | - | 1 | |
| rat | agccttgcacctggagaacttgcctgtacagtaagccacatgaTCCCACGGTTTGATTATATGTTGTGATATCTTAGGCTCTGTacccagtatgttctatttcttccacaattgcagggt | ||||
| ************************************************************************************************************************ | |||||
| rat | .((((((((..((((((((.(((..((((((..((((....(((..(((((..((....))..)))))..)))...))))))))))...))).)))).......))))....)))))))) | 0.970 -35.51 | |||
| rat | chromosome:1:48276824:48276943:-1 | intergenic |
block959277 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.21/0.40 | 19/26/0.57 | 2.5 1.7 0.0 | 1.0 1.7 0.0 | 2 3 2 | 0 0 0 | 2 2 1 | 0 0 0 | 43 43 36 | -14 -20 5 | 5arm_loop_3arm 3arm_loop 3arm | 3 5 5 | nd nd nd | 0.42 0.42 0.25 | 4 4 3 | 7 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------GUGAUAU------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------UGAUUAU------------------------------------------------------------ | 1 | novel | ||
| seed | -------------------------------------------------GGUUUGA---------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------CCCACGG--------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------UAUAUGU-------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------GAUUAUA----------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------------------------------------------------TGTGATATCTTAGGCTCTGT------------------------------------ | 20 | - | - | 2 | |
| ------------------------------------------------CGGTTTGATTATATGTTGT----------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------TTGATTATATGTTGTGATATCTT--------------------------------------------- | 23 | - | - | 1 | |
| -----------------------------------------------------TGATTATATGTTGTGATAT------------------------------------------------ | 19 | 1 | - | - | |
| -------------------------------------------TCCCACGGTTTGATTATATGTTGTGA--------------------------------------------------- | 26 | - | - | 1 | |
| --------------------------------------------------------TTATATGTTGTGATATCTTAG------------------------------------------- | 21 | - | - | 1 | |
| rat | agccttgcacctggagaacttgcctgtacagtaagccacatgaTCCCACGGTTTGATTATATGTTGTGATATCTTAGGCTCTGTacccagtatgttctatttcttccacaattgcagggt | ||||
| ************************************************************************************************************************ | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | ||||
| rat | .((((((((..((((((((.(((..((((((..((((....(((..(((((..((....))..)))))..)))...))))))))))...))).)))).......))))....)))))))) | 0.970 -35.51 | |||
| rat | chromosome:1:47865898:47866017:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
block959681 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.21/0.40 | 19/26/0.57 | 2.5 1.7 0.0 | 1.0 1.7 0.0 | 2 3 2 | 0 0 0 | 2 2 1 | 0 0 0 | 43 43 36 | -14 -20 5 | 5arm_loop_3arm 3arm_loop 3arm | 3 5 5 | nd nd nd | 0.42 0.42 0.25 | 4 4 3 | 7 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------GUGAUAU------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------UGAUUAU------------------------------------------------------------ | 1 | novel | ||
| seed | -------------------------------------------------GGUUUGA---------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------CCCACGG--------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------UAUAUGU-------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------GAUUAUA----------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------------------------------------------------TGTGATATCTTAGGCTCTGT------------------------------------ | 20 | - | - | 2 | |
| ------------------------------------------------CGGTTTGATTATATGTTGT----------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------TTGATTATATGTTGTGATATCTT--------------------------------------------- | 23 | - | - | 1 | |
| -----------------------------------------------------TGATTATATGTTGTGATAT------------------------------------------------ | 19 | 1 | - | - | |
| -------------------------------------------TCCCACGGTTTGATTATATGTTGTGA--------------------------------------------------- | 26 | - | - | 1 | |
| --------------------------------------------------------TTATATGTTGTGATATCTTAG------------------------------------------- | 21 | - | - | 1 | |
| rat | agccttgcacctggagaacttgcctgtacagtaagccacatgaTCCCACGGTTTGATTATATGTTGTGATATCTTAGGCTCTGTacccagtatgttctatttcttccacaattgcagggt | ||||
| ************************************************************************************************************************ | |||||
| rat | .((((((((..((((((((.(((..((((((..((((....(((..(((((..((....))..)))))..)))...))))))))))...))).)))).......))))....)))))))) | 0.970 -35.51 | |||
| rat | chromosome:1:47985572:47985691:1 | intergenic |
block1093854 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.45/0.63 | 19/21/0.40 | 0.0 2.2 | 0.0 1.8 | 1 4 | 0 0 | 1 1 | 0 0 | 51 34 | -19 -6 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.55 0.26 | 10 3 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------AAGUUCC--------------------------------------------- | 2 | novel |
| seed | ---------------------------------------------------------CCUGUAG---------------------------------------------------- | 1 | miR-10b |
| seed | --------------------------------------------------------------AGAAGUU----------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------UCCUUCC--------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------------------GAAGTTCCGGTCTGGCCAC---------------------------------- | 19 | 2 | |
| --------------------------------------------------------TCCTGTAGAAGTTCCGGTCTG--------------------------------------- | 21 | 1 | |
| -------------------------------------------------------------TAGAAGTTCCGGTCTGGCC------------------------------------ | 19 | 1 | |
| ---------------------------------------------------TTCCTTCCTGTAGAAGTTCC--------------------------------------------- | 20 | 1 | |
| rat | gctttgggctaaactgcctgtgggggtggggagtgggcttctccggggttcTTCCTTCCTGTAGAAGTTCCGGTCTGGCCACactcactcagcatcccccacctcagccctgtgca | ||
| ******************************************************************************************************************** | |||
| rat | ((...(((((.........((((((((((((((((((((...((((((((((..........)))).))))))...)))).))))).))))....)))))))...)))))...)). | 0.940 -52.90 |
| rat | chromosome:20:5550494:5550609:1 | intergenic |
block1574952 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.40/0.59 | 19/23/0.50 | 0.0 0.0 1.5 | 0.0 0.0 1.6 | 1 1 8 | 0 0 0 | 1 1 1 | 0 0 0 | 6 16 25 | 5 -5 -18 | 5arm 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.27 0.41 0.30 | 3 5 5 | 10 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------GAUGAUG---------------------------- | 4 | novel |
| seed | --------------------------CAUGAUG------------------------------- | 2 | novel |
| seed | ---------------------------AUGAUGA------------------------------ | 1 | novel |
| seed | -------CCCUGUU-------------------------------------------------- | 1 | novel |
| seed | -----------------GGGGUGC---------------------------------------- | 1 | miR-342 |
| seed | ---------------------------------AUGUGUA------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------TGATGATGTGTATGGTGGG----------------- | 19 | 3 | |
| ------TCCCTGTTCATGGGGTGCCTCA------------------------------------ | 22 | 1 | |
| ----------------TGGGGTGCCTCATGATGATGTG-------------------------- | 22 | 1 | |
| --------------------------CATGATGATGTGTATGGTG------------------- | 19 | 1 | |
| -------------------------TCATGATGATGTGTATGGTG------------------- | 20 | 1 | |
| ----------------------------TGATGATGTGTATGGTGGGGCTC------------- | 23 | 1 | |
| --------------------------------GATGTGTATGGTGGGGCTC------------- | 19 | 1 | |
| -------------------------TCATGATGATGTGTATGGTGGGG---------------- | 23 | 1 | |
| rat | tcactgTCCCTGTTCATGGGGTGCCTCATGATGATGTGTATGGTGGGGCTCgtgatgggattga | ||
| **************************************************************** | |||
| -------------------------------------------------------------------------- | ENSRNOT00000057552 ENSRNOG00000037879 | ||
| rat | (((..(((((...((((((...(((((((.(((.....))).))))))))))))).)))))))) | 1.000 -24.70 |
| rat | chromosome:4:119284103:119284166:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## ENSRNOG00000037879|protein_coding|| |
sblock12771 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.44/0.56 | 18/22/0.33 | 0.0 0.0 0.0 1.3 | 0.0 0.0 0.0 1.3 | 1 1 1 3 | 0 0 0 0 | 1 1 1 3 | 0 0 0 0 | 11 49 34 19 | 32 -6 -2 8 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 2 2 2 2 | nd nd nd nd | 0.33 0.33 0.22 0.22 | 3 4 2 2 | 6 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------GGGUGGU---------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------------------------------------------------GACGUUU--------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------------------AGACGUU---------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------CUGAGAC-------------------------------------------- | 1 | novel | ||||
| seed | ------------GGCUUUG------------------------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | -----------------------------------------------------------------------------CGUUUGU------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------------CAGACGTTTGTGACAGGGAAGA-------------------- | 22 | - | 1 | - | - | - | |
| --------------------------------------------------------------------------AGACGTTTGTGACAGGGA----------------------- | 18 | 1 | - | - | - | - | |
| ----------------------------------------------------------------------------ACGTTTGTGACAGGGAAGAC------------------- | 20 | - | - | - | - | 1 | |
| -----------AGGCTTTGAAGTGGATAC-------------------------------------------------------------------------------------- | 18 | - | - | 1 | - | - | |
| ---------------------------------------------------------------CCTGAGACCACAGACGTT---------------------------------- | 18 | - | - | 1 | - | - | |
| -------------------------------------------------AGGGTGGTTTCAGTCCTG------------------------------------------------ | 18 | - | - | - | 1 | - | |
| rat | gctagcgtcacAGGCTTTGAAGTGGATACttccctgaacaaagattttcAGGGTGGTTTCAGTCCTGAGACCACAGACGTTTGTGACAGGGAAGACttgctgggagcgacctggc | ||||||
| ******************************************************************************************************************* | |||||||
| rat | (((((.(((....(((((..(((((...((((((((.(((((.....((...(((((((((....))))))))).))..)))))..))))))))..))))).))))))))))))) | 0.890 -43.90 | |||||
| rat | chromosome:X:26828978:26829092:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH (8 loci)
sblock10717 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.178 | no | no | 0.26/0.42 | 19/24/0.22 | 0.0 2.0 0.0 0.0 | 0.0 2.3 0.0 0.0 | 4 3 1 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 5 15 11 4 | 19 3 13 20 | 5arm 5arm 3arm 3arm | 4 4 4 4 | nd nd nd nd | 0.32 0.42 0.26 0.26 | 4 5 4 5 | 9 | 3 | -7 | -3 |
| reads | miRBase family seed | ||||
| seed | ------AGACAAA------------------------------------------------------------------------------ | 4 | novel | ||
| seed | ----------------CUGUUUC-------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------GAAAUGG--------------- | 1 | novel | ||
| seed | ----------------------CAUGAUA-------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------CCAGCAU---------------------- | 1 | miR-338 | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T5S1 | |||
| -----CAGACAAATCTCTGTTTCA------------------------------------------------------------------- | 19 | - | - | 4 | |
| -------------------------------------------------------------TCCAGCATGAAATGGATGT----------- | 19 | - | - | 1 | |
| --------------------------------------------------------------------TGAAATGGATGTAATTTGA---- | 19 | 1 | - | - | |
| ---------------------TCATGATATTGTCCACTGC--------------------------------------------------- | 19 | - | - | 1 | |
| ---------------TCTGTTTCATGATATTGTCCA------------------------------------------------------- | 21 | - | 1 | - | |
| ---------------TCTGTTTCATGATATTGTCCACTG---------------------------------------------------- | 24 | - | - | 1 | |
| rat | gtttcCAGACAAATCTCTGTTTCAtgatattgtccactgcgtccagtagactgcttcatactccagcatgaaatggatgtaatttgaaatg | ||||
| ******************************************************************************************* | |||||
| rat | (((((...(((....(((((((((((.....((.....(((((.....))).)).....)).....)))))))))))))).....))))). | 0.570 -18.70 | |||
| rat | chromosome:7:18806654:18806744:-1 | intergenic |
sblock10760 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.178 | no | no | 0.26/0.42 | 19/24/0.22 | 0.0 2.0 0.0 0.0 | 0.0 2.3 0.0 0.0 | 4 3 1 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 5 15 11 4 | 19 3 13 20 | 5arm 5arm 3arm 3arm | 4 4 4 4 | nd nd nd nd | 0.32 0.42 0.26 0.26 | 4 5 4 5 | 9 | 3 | -7 | -3 |
| reads | miRBase family seed | ||||
| seed | ------AGACAAA------------------------------------------------------------------------------ | 4 | novel | ||
| seed | ----------------CUGUUUC-------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------GAAAUGG--------------- | 1 | novel | ||
| seed | ----------------------CAUGAUA-------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------CCAGCAU---------------------- | 1 | miR-338 | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T5S1 | |||
| -----CAGACAAATCTCTGTTTCA------------------------------------------------------------------- | 19 | - | - | 4 | |
| -------------------------------------------------------------TCCAGCATGAAATGGATGT----------- | 19 | - | - | 1 | |
| --------------------------------------------------------------------TGAAATGGATGTAATTTGA---- | 19 | 1 | - | - | |
| ---------------------TCATGATATTGTCCACTGC--------------------------------------------------- | 19 | - | - | 1 | |
| ---------------TCTGTTTCATGATATTGTCCA------------------------------------------------------- | 21 | - | 1 | - | |
| ---------------TCTGTTTCATGATATTGTCCACTG---------------------------------------------------- | 24 | - | - | 1 | |
| rat | gtttcCAGACAAATCTCTGTTTCAtgatattgtccactgcgtccagtagactgcttcatactccagcatgaaatggatgtaatttgaaatg | ||||
| ******************************************************************************************* | |||||
| rat | (((((...(((....(((((((((((.....((.....(((((.....))).)).....)).....)))))))))))))).....))))). | 0.570 -18.70 | |||
| rat | chromosome:7:19401632:19401722:-1 | intergenic |
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