other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_randfoldOK (8 loci)
novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem (8 loci)
sblock12364 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.328 | no | no | 0.58/0.70 | 19/20/0.33 | 0.5 0.0 | 0.5 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 0 0 | 15 5 | 5arm 3arm | 14 18 | nd nd | 0.42 0.16 | 3 2 | 3 | 3 | -5 | -3 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------CCGCCCA------------ | 1 | novel | ||
| seed | --UGGGCGA------------------------------------------------------- | 1 | novel | ||
| seed | -CUGGGCG-------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T2S2 | |||
| -CTGGGCGAGTTTTCCTTCC-------------------------------------------- | 19 | - | 1 | - | |
| CCTGGGCGAGTTTTCCTTC--------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------GCCGCCCAAGCTGACTCCTC | 20 | 1 | - | - | |
| rat | CCTGGGCGAGTTTTCCTTCCgcgggtgccggcagccagggcgccGCCGCCCAAGCTGACTCCTC | ||||
| **************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046551 ENSRNOG00000040154 LOC685769 | ||||
| rat | ...(((.(((((...(((....(((((.((((.((....)))))).))))))))..)))))))) | 0.990 -26.20 | |||
| rat | chromosome:9:5686512:5686575:1 | Same_strand|Intronic_non-coding|ENSRNOT00000046551|ENSRNOG00000040154 ## ENSRNOG00000040154|protein_coding|LOC685769| ## {SimpF: 1 Eponine} |
sblock1552 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.50/0.54 | 18/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 10 29 | 5arm 3arm | 32 42 | nd nd | 0.29 0.47 | 3 4 | 2 | 2 | 9 | 0 |
| reads | miRBase family seed | |||
| seed | -CAAUUGU-------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------UUCACUG---------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ----------------------------------------------------------------------CTTCACTGTCACAGAACC | 18 | 1 | - | |
| TCAATTGTGCAGCAGCTCCCCTGT---------------------------------------------------------------- | 24 | - | 1 | |
| rat | TCAATTGTGCAGCAGCTCCCCTGTaggtagattgaccgccacaatctcagtgcctacactttcaaaggacCTTCACTGTCACAGAACC | |||
| **************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| -------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ....((((((((.((.(((..(((((((((((((.......))))))....)))))))........))).))...))).))))).... | 0.830 -21.20 | ||
| rat | chromosome:1:51891491:51891578:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1718 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.092 | no | no | 0.50/0.54 | 18/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 10 29 | 5arm 3arm | 32 42 | nd nd | 0.29 0.47 | 3 4 | 2 | 2 | 9 | 0 |
| reads | miRBase family seed | |||
| seed | -CAAUUGU-------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------UUCACUG---------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ----------------------------------------------------------------------CTTCACTGTCACAGAACC | 18 | 1 | - | |
| TCAATTGTGCAGCAGCTCCCCTGT---------------------------------------------------------------- | 24 | - | 1 | |
| rat | TCAATTGTGCAGCAGCTCCCCTGTaggtagattgaccgccacgatctcagtgcctacactttcaaaggacCTTCACTGTCACAGAACC | |||
| **************************************************************************************** | ||||
| rat | ....((((((((.((.(((..(((((((((((((.......))))))....)))))))........))).))...))).))))).... | 0.830 -20.90 | ||
| rat | chromosome:1:52981006:52981093:1 | intergenic |
sblock328 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.50/0.54 | 18/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 10 29 | 5arm 3arm | 32 42 | nd nd | 0.29 0.47 | 3 4 | 2 | 2 | 9 | 0 |
| reads | miRBase family seed | |||
| seed | -CAAUUGU-------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------UUCACUG---------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ----------------------------------------------------------------------CTTCACTGTCACAGAACC | 18 | 1 | - | |
| TCAATTGTGCAGCAGCTCCCCTGT---------------------------------------------------------------- | 24 | - | 1 | |
| rat | TCAATTGTGCAGCAGCTCCCCTGTaggtagattgaccgccacaatctcagtgcctacactttcaaaggacCTTCACTGTCACAGAACC | |||
| **************************************************************************************** | ||||
| rat | ....((((((((.((.(((..(((((((((((((.......))))))....)))))))........))).))...))).))))).... | 0.830 -21.20 | ||
| rat | chromosome:1:50399167:50399254:-1 | intergenic ## {Repeats: trf 1 13 0 class=trf,trf 48 66 0 class=trf} |
sblock423 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.092 | no | no | 0.50/0.54 | 18/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 10 29 | 5arm 3arm | 32 42 | nd nd | 0.29 0.47 | 3 4 | 2 | 2 | 9 | 0 |
| reads | miRBase family seed | |||
| seed | -CAAUUGU-------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------UUCACUG---------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ----------------------------------------------------------------------CTTCACTGTCACAGAACC | 18 | 1 | - | |
| TCAATTGTGCAGCAGCTCCCCTGT---------------------------------------------------------------- | 24 | - | 1 | |
| rat | TCAATTGTGCAGCAGCTCCCCTGTaggtagattgaccgccacgatctcagtgcctacactttcaaaggacCTTCACTGTCACAGAACC | |||
| **************************************************************************************** | ||||
| rat | ....((((((((.((.(((..(((((((((((((.......))))))....)))))))........))).))...))).))))).... | 0.830 -20.90 | ||
| rat | chromosome:1:51294077:51294164:-1 | intergenic ## {Repeats: trf 48 66 0 class=trf,trf 2 26 0 class=trf} |
sblock4244 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.351 | no | no | 0.70/0.72 | 18/23/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 1 0 | 27 38 | 5arm 3arm | 15 15 | nd nd | 0.09 0.18 | 1 1 | 2 | 2 | 7 | 1 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------------------ACGGGGC---------- | 1 | novel | |
| seed | --GCACACG------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ---------------------------------------------------------------------------------------------GACGGGGCGCGCGTGTTA | 18 | - | 1 | |
| -GGCACACGTGTCCTTCCCACCCC--------------------------------------------------------------------------------------- | 23 | 1 | - | |
| rat | gGGCACACGTGTCCTTCCCACCCCgccgcacgaccgcgcccgagccgggcctcagggtacgcggagctcgtgggtgagcgcggggcctgagggGACGGGGCGCGCGTGTTA | |||
| *************************************************************************************************************** | ||||
| rat | .(((((.((((((((((((.(((((.(((.((.(((((((((...((..((....))..))))).))..)))).)).))))))))......)))).)))))))).))))). | 0.480 -57.40 | ||
| rat | chromosome:14:49220152:49220262:1 | intergenic |
sblock4246 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.351 | no | no | 0.70/0.72 | 18/23/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 1 0 | 27 38 | 5arm 3arm | 15 15 | nd nd | 0.09 0.18 | 1 1 | 2 | 2 | 7 | 1 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------------------ACGGGGC---------- | 1 | novel | |
| seed | --GCACACG------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ---------------------------------------------------------------------------------------------GACGGGGCGCGCGTGTTA | 18 | - | 1 | |
| -GGCACACGTGTCCTTCCCACCCC--------------------------------------------------------------------------------------- | 23 | 1 | - | |
| rat | gGGCACACGTGTCCTTCCCACCCCgccgcacgaccgcgcccgagccgggcctcagggtacgcggagctcgtgggtgagcgcggggcctgagggGACGGGGCGCGCGTGTTA | |||
| *************************************************************************************************************** | ||||
| rat | .(((((.((((((((((((.(((((.(((.((.(((((((((...((..((....))..))))).))..)))).)).))))))))......)))).)))))))).))))). | 0.480 -57.40 | ||
| rat | chromosome:14:49222517:49222627:1 | intergenic |
sblock4255 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.328 | no | no | 0.58/0.70 | 19/20/0.33 | 0.5 0.0 | 0.5 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 0 0 | 15 5 | 5arm 3arm | 14 18 | nd nd | 0.42 0.16 | 3 2 | 3 | 3 | -5 | -3 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------CCGCCCA------------ | 1 | novel | ||
| seed | --UGGGCGA------------------------------------------------------- | 1 | novel | ||
| seed | -CUGGGCG-------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T2S2 | |||
| -CTGGGCGAGTTTTCCTTCC-------------------------------------------- | 19 | - | 1 | - | |
| CCTGGGCGAGTTTTCCTTC--------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------GCCGCCCAAGCTGACTCCTC | 20 | 1 | - | - | |
| rat | CCTGGGCGAGTTTTCCTTCCgcgggtgccggcagccagggcgccGCCGCCCAAGCTGACTCCTC | ||||
| **************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043791 ENSRNOG00000032207 LOC690700 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000045975 ENSRNOG00000032207 LOC690700 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059076 ENSRNOG00000032207 LOC690700 | ||||
| rat | ...(((.(((((...(((....(((((.((((.((....)))))).))))))))..)))))))) | 0.990 -26.20 | |||
| rat | chromosome:14:49633337:49633400:1 | Same_strand|Boundary_non-coding|ENSRNOT00000050021|ENSRNOG00000032207 ## Same_strand|Intronic_coding|ENSRNOT00000045975|ENSRNOG00000032207 ## Same_strand|Intronic_non-coding|ENSRNOT00000043791|ENSRNOG00000032207 ## ENSRNOG00000032207|protein_coding|LOC690700|LOC501224 protein. [Source:UniProtKB/TrEMBL;Acc:Q0P5Q7] ## {SimpF: 1 Eponine} |
novel_lenNOK_multiarm_Multihit_loopOverlap_randfoldOK (8 loci)
block846147 [novel_lenNOK_multiarm_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.42/0.42 | 19/24/0.33 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 22 2 | -21 1 | 5arm_loop_3arm 3arm | 16 20 | nd nd | 0.38 0.11 | 8 1 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------AUCACAU------------- | 2 | novel | |
| seed | -----------------------AGCACCU------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ----------------------------------TATCACATGAAGCCCACTA-- | 19 | - | 2 | |
| ----------------------TAGCACCTCAACTATCACATGAAG--------- | 24 | 1 | - | |
| rat | tgatgttggaatttcactgtggTAGCACCTCAACTATCACATGAAGCCCACTAtt | |||
| ******************************************************* | ||||
| rat | .((((.(((..(((((.((((((((........))))))))))))).))).)))) | 1.000 -15.20 | ||
| rat | chromosome:1:50965434:50965488:-1 | intergenic |
block962492 [novel_lenNOK_multiarm_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.42/0.42 | 19/24/0.33 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 22 2 | -21 1 | 5arm_loop_3arm 3arm | 16 20 | nd nd | 0.38 0.11 | 8 1 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------AUCACAU------------- | 2 | novel | |
| seed | -----------------------AGCACCU------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ----------------------------------TATCACATGAAGCCCACTA-- | 19 | - | 2 | |
| ----------------------TAGCACCTCAACTATCACATGAAG--------- | 24 | 1 | - | |
| rat | tgatgttggactttcactgtggTAGCACCTCAACTATCACATGAAGCCCACTAtt | |||
| ******************************************************* | ||||
| rat | .((((.(((.((.(((.((((((((........))))))))))))).))).)))) | 1.000 -15.60 | ||
| rat | chromosome:1:51429971:51430025:1 | intergenic |
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