other hairpins
novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH (8 loci)
sblock9117 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.042 | no | no | 0.50/0.63 | 18/23/0.78 | 0.0 2.5 0.0 0.0 0.0 0.0 | 0.0 3.5 0.0 0.0 0.0 0.0 | 1 2 1 1 3 1 | 0 0 0 0 0 0 | 1 1 1 1 1 1 | 0 0 0 0 0 0 | 1 30 43 47 24 15 | 34 -5 -9 -14 5 14 | 5arm 5arm_loop_3arm 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.33 0.52 0.58 0.60 0.45 0.41 | 2 10 5 6 5 5 | 9 | 2 | 0 | 8 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------CCUGCCA-------------------------------------- | 3 | novel | |
| seed | --------------------------------------------ACCUCUG---------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------GGCAAUC----------------------------- | 1 | novel | |
| seed | --CAUGUCU---------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------GUGUCUC------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------GCCUAGU----------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------CUGGCCC------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------------TCCTGCCACTGGCAATCTCTGG------------------------ | 22 | - | 3 | |
| -------------------------------------------TACCTCTGGCCCACTGCCA----------------------------------------------- | 19 | - | 1 | |
| -CCATGTCTACAGGGCAGC------------------------------------------------------------------------------------------ | 18 | - | 1 | |
| -----------------------------------AGTGTCTCTACCTCTGGCCCACT--------------------------------------------------- | 23 | - | 1 | |
| ------------------------------------------------------------------------TGGCAATCTCTGGGACTCTTGT--------------- | 22 | 1 | - | |
| -----------------------------------------------TCTGGCCCACTGCCAATCCT------------------------------------------ | 20 | - | 1 | |
| ------------------------------TGCCTAGTGTCTCTACCTCTG---------------------------------------------------------- | 21 | - | 1 | |
| rat | aCCATGTCTACAGGGCAGCccaggacctacTGCCTAGTGTCTCTACCTCTGGCCCACTGCCAATCCTGCCACTGGCAATCTCTGGGACTCTTGTacttcctgtcacagg | |||
| ************************************************************************************************************* | ||||
| rat | .((.(((..((((((.((..(((((((((.((((.((((..........((((.....)))).......)))))))).....))))..)))))..)))))))).))))) | 0.600 -30.63 | ||
| rat | chromosome:4:164268310:164268418:1 | intergenic |
sblock9726 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.396 | no | no | 0.43/0.50 | 20/24/1.00 | 2.5 1.0 | 4.0 1.0 | 2 2 | 0 0 | 2 2 | 0 0 | 20 8 | -12 3 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.38 0.35 | 5 3 | 4 | 4 | 7 | 9 |
| reads | miRBase family seed | |||||
| seed | ---------------------CAUUUGC-------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------GCUGAAG--------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------CUCAGCG---------------------- | 1 | novel | |||
| seed | -----------------------------------------------------CUCUCAG------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ------------------------------------------------------TCTCAGCGTAAGGAGTGAGT---------- | 20 | - | 1 | - | - | |
| ----------------------------------------------------TCTCTCAGCGTAAGGAGTGAGTGA-------- | 24 | - | - | - | 1 | |
| --------------------TCATTTGCTGAAGGTGTGAGA------------------------------------------- | 21 | 1 | - | - | - | |
| -------------------------TGCTGAAGGTGTGAGATTTGGGGA----------------------------------- | 24 | - | - | 1 | - | |
| rat | gcgataacaaggcccaagctTCATTTGCTGAAGGTGTGAGATTTGGGGAgcaTCTCTCAGCGTAAGGAGTGAGTGAaaagttgc | |||||
| ************************************************************************************ | ||||||
| rat | (((((......((....(((((...((((((((((((............)))))).))))))...)))))..)).....))))) | 0.440 -20.50 | ||||
| rat | chromosome:5:79242593:79242676:1 | intergenic |
novel_multiarm_DicerNOK_mirtron (8 loci)
sblock1018 [novel_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.061 | no | no | 0.52/0.63 | 19/21/0.80 | 0.0 0.0 | 1.0 0.0 | 2 3 | 0 0 | 1 2 | 0 0 | 14 15 | 3 2 | 5arm 3arm | 1 1 | 35 0 | 0.19 0.24 | 3 2 | 5 | 2 | -1 | -1 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------GUCCUCC---------------------------- | 3 | novel | |
| seed | ---------------CUGGGGA--------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------------------------------------------------TGTCCTCCATCTCTTCCTCAG--------------- | 21 | 2 | 1 | |
| --------------CCTGGGGAGATTGGGTGAG---------------------------------------------------- | 19 | 1 | - | |
| --------------CCTGGGGAGATTGGGTGAGAC-------------------------------------------------- | 21 | 1 | - | |
| rat | agcaggatactgtgCCTGGGGAGATTGGGTGAGACgggtctctgactccTGTCCTCCATCTCTTCCTCAGacccccatcttctgc | |||
| ************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000039133 ENSRNOG00000028274 Gm98 | |||
| rat | .((((((........(((((((((.((((...((((((.........)))))).))))..)))))).))).........)))))) | 0.860 -27.43 | ||
| rat | chromosome:1:212712659:212712743:-1 | Same_strand|Intronic_coding|ENSRNOT00000039133|ENSRNOG00000028274 ## ENSRNOG00000028274|protein_coding|Gm98|gene model 98, (NCBI) Gene [Source:MGI Symbol;Acc:MGI:2684944] |
sblock12130 [novel_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.071 | no | no | 0.57/0.65 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 16 23 | 3 2 | 5arm 3arm | 1 1 | 39 0 | 0.15 0.38 | 1 6 | 3 | 1 | -1 | 0 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------CACGUGC------------------------------------ | 2 | novel |
| seed | -----------------GGUGGGA-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ------------------------------------------------------CCACGTGCATATTCCCCACAG----------------------- | 21 | 2 | |
| ----------------GGGTGGGAAGGTGCCACTTG-------------------------------------------------------------- | 20 | 1 | |
| rat | ctgtacctatgtcaatGGGTGGGAAGGTGCCACTTGggaactccagacaacatcCCACGTGCATATTCCCCACAGgtgaatccagcacagtggtcagt | ||
| ************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000040661 ENSRNOG00000034005 Celsr3 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000042104 ENSRNOG00000034005 Celsr3 | ||
| rat | (((.(((..(((...((((((((((.(((.(((.(((((.............))))).)))))).))))).........)))))..)))..)))))). | 0.530 -30.92 |
| rat | chromosome:8:113890388:113890485:1 | Same_strand|Intronic_coding|ENSRNOT00000042104|ENSRNOG00000034005 ## ENSRNOG00000034005|protein_coding|Celsr3|Cadherin EGF LAG seven-pass G-type receptor 3 precursor (Multiple epidermal growth factor-like domains 2). [Source:UniProtKB/Swiss-Prot;Acc:O88278] |
sblock4146 [novel_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.67/0.71 | 21/22/1.00 | 0.0 0.3 | 0.0 0.0 | 1 3 | 0 0 | 1 2 | 0 0 | 8 21 | 7 4 | 5arm 3arm | 1 1 | 42 2 | 0.10 0.27 | 1 5 | 4 | 2 | -4 | -1 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------UGGUGCC---------------------------------- | 2 | novel | |
| seed | ---------GAGCGGU-------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------CUGGUGC----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------------------------------------CTGGTGCCTGCTCCACCCCAC--------------------- | 21 | 2 | - | |
| --------AGAGCGGTGGGTGTGGGACAC------------------------------------------------------------- | 21 | 1 | - | |
| -----------------------------------------------TCTGGTGCCTGCTCCACCCCAC--------------------- | 22 | - | 1 | |
| rat | ggtggggcAGAGCGGTGGGTGTGGGACACtgacctcccccattgatgTCTGGTGCCTGCTCCACCCCACaggtaagctcagtttccacca | |||
| ****************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000057144 ENSRNOG00000037664 Tbrg4 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000010152 ENSRNOG00000037664 Tbrg4 | |||
| rat | ((((((((.((((((((((.(((((.(((((((.((.......)).))).)))))))))))))))..........)))).))).))))). | 0.910 -37.90 | ||
| rat | chromosome:14:87376058:87376147:-1 | Same_strand|Intronic_coding|ENSRNOT00000057144|ENSRNOG00000037664 ## ENSRNOG00000037664|protein_coding|Tbrg4|Protein TBRG4 (Transforming growth factor beta regulator 4). [Source:UniProtKB/Swiss-Prot;Acc:Q5M9G9] |
sblock4175 [novel_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.62/0.65 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 18 11 | 5 2 | 5arm 3arm | 1 1 | 33 0 | 0.30 0.19 | 3 2 | 2 | 2 | -2 | 0 |
| reads | miRBase family seed | |||
| seed | -------------------GGUGGGA-------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------UCUCACC------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S2 | |||
| ------------------TGGTGGGAAGGTGGGCTGAG-------------------------------------------- | 20 | 1 | - | |
| --------------------------------------------------CTCTCACCCCATTGCCCACAG----------- | 21 | - | 1 | |
| rat | gtgttctatgaaaggagcTGGTGGGAAGGTGGGCTGAGtagtcaggctggCTCTCACCCCATTGCCCACAGgccacagggca | |||
| ********************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>> | ENSRNOT00000000064 ENSRNOG00000000048 Gak | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>> | ENSRNOT00000061740 ENSRNOG00000000048 Gak | |||
| rat | .((..((.((......(((.(((((...(((((.((((.((((.....)))))))).)))))..))))).))))).))..)) | 0.410 -34.30 | ||
| rat | chromosome:14:1709770:1709851:1 | Same_strand|Intronic_coding|ENSRNOT00000061740|ENSRNOG00000000048 ## ENSRNOG00000000048|protein_coding|Gak|Cyclin G-associated kinase (EC 2.7.11.1). [Source:UniProtKB/Swiss-Prot;Acc:P97874] |
sblock5812 [novel_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.52/0.64 | 21/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 14 14 | 0 2 | 5arm 3arm | 1 1 | 36 2 | 0.18 0.29 | 2 2 | 2 | 2 | 2 | -1 |
| reads | miRBase family seed | |||
| seed | ---------------UGCCAAG-------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------CAGUAAC--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S2 | |||
| -------------------------------------------------TCAGTAACATCCCCCTTTGCC-------------- | 21 | 1 | - | |
| --------------TTGCCAAGGGGCTTGTCTGGGG------------------------------------------------ | 22 | - | 1 | |
| rat | ccactctgaggcacTTGCCAAGGGGCTTGTCTGGGGcgagccggtaaccTCAGTAACATCCCCCTTTGCCaggtcctatctgga | |||
| ************************************************************************************ | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>> | ENSRNOT00000018671 ENSRNOG00000013913 BC039210 | |||
| rat | (((.....(((.((((((.((((((..(((((((((...........))))))..)))..)))))).)).)))))))...))). | 0.980 -31.10 | ||
| rat | chromosome:19:52781101:52781184:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058332|ENSRNOG00000013913 ## Same_strand|Intronic_coding|ENSRNOT00000018671|ENSRNOG00000013913 ## ENSRNOG00000013913|protein_coding|BC039210|BC039210 protein Fragment [Source:UniProtKB/TrEMBL;Acc:Q80XT7] |
sblock5928 [novel_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.065 | no | no | 0.50/0.55 | 22/24/1.00 | 0.0 0.0 | 0.0 0.5 | 1 2 | 0 0 | 1 2 | 0 0 | 18 16 | 5 5 | 5arm 3arm | 1 1 | 39 1 | 0.18 0.17 | 2 3 | 3 | 2 | 0 | 2 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------CACAGUC-------------------------------- | 2 | novel | |
| seed | -------------------GGGAGCA-------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------------------------------------------ACACAGTCCAGTTCTGCTTCCACA---------------- | 24 | 1 | - | |
| ------------------AGGGAGCAGGAAGACTGATTGC------------------------------------------------------ | 22 | 1 | - | |
| ------------------------------------------------------ACACAGTCCAGTTCTGCTTCCAC----------------- | 23 | - | 1 | |
| rat | gccccgtgggctgtggggAGGGAGCAGGAAGACTGATTGCatttgagaccaggtACACAGTCCAGTTCTGCTTCCACAgggaggatgcatgggc | |||
| ********************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000033316 ENSRNOG00000028270 LOC292069 | |||
| rat | ..((((((..((.((....((((((((((.(((((..((.(((((....))))).)))))))...)))))))))).)).))......)))))). | 0.970 -34.70 | ||
| rat | chromosome:19:52770512:52770605:1 | Same_strand|Intronic_coding|ENSRNOT00000033316|ENSRNOG00000028270 ## ENSRNOG00000028270|protein_coding|LOC292069|UPF0432 protein C16orf84 homolog. [Source:UniProtKB/Swiss-Prot;Acc:Q3B7U4] |
sblock8982 [novel_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.101 | no | no | 0.50/0.52 | 18/23/0.80 | 0.0 0.0 | 0.0 3.3 | 2 3 | 0 0 | 2 2 | 0 0 | 18 15 | 3 13 | 5arm 3arm | 1 1 | 45 2 | 0.20 0.39 | 2 4 | 5 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------UUCCCUU------------------------------ | 3 | novel | |
| seed | -------------------CUGGACA---------------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------TCTGGACAGCTGTAAGTGAC---------------------------------------------------------- | 20 | 1 | 1 | |
| ----------------------------------------------------------TTTCCCTTGCTCTGTCCTGTCTC--------------- | 23 | 1 | 1 | |
| ----------------------------------------------------------TTTCCCTTGCTCTGTCCT-------------------- | 18 | - | 1 | |
| rat | gccagtgatcagcttctgTCTGGACAGCTGTAAGTGACaggtctgcctgttaatgtccTTTCCCTTGCTCTGTCCTGTCTCaggaggccaggtggt | |||
| ************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> | ENSRNOT00000043082 ENSRNOG00000018317 RGD1563580_predicted | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> | ENSRNOT00000024740 ENSRNOG00000018317 RGD1563580_predicted | |||
| rat | ((((.......((((((....((((((..((((((((((((....)))))))...........))))).)))))).......))))))....)))) | 0.800 -30.40 | ||
| rat | chromosome:4:121091507:121091602:1 | Same_strand|Boundary_non-coding|ENSRNOT00000033730|ENSRNOG00000018317 ## Same_strand|Intronic_coding|ENSRNOT00000024740|ENSRNOG00000018317 ## ENSRNOG00000018317|protein_coding|RGD1563580_predicted|AP2-associated protein kinase 1 (EC 2.7.11.-) (Adaptor-associated kinase 1). [Source:UniProtKB/Swiss-Prot;Acc:P0C1X8] |
sblock9507 [novel_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.344 | no | no | 0.43/0.48 | 20/23/1.00 | 0.5 0.0 | 1.5 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 26 10 | 0 14 | 5arm 3arm | 1 1 | 40 0 | 0.35 0.20 | 5 2 | 3 | 3 | 11 | 10 |
| reads | miRBase family seed | ||||
| seed | ----------------------------GAUGGAA----------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------AGAUGGA------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------------------------------------GGCUAUU---------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T4S2 | T5S1 | |||
| --------------------------TAGATGGAAGAAACAGCCACA----------------------------------------------------- | 21 | 1 | - | - | |
| ----------------------------------------------------------------------TGGCTATTCTTTCCTCCTAG---------- | 20 | - | 1 | - | |
| ---------------------------AGATGGAAGAAACAGCCACAGGT-------------------------------------------------- | 23 | - | - | 1 | |
| rat | tggcaagggtgtatgtagcagggaagTAGATGGAAGAAACAGCCACAGGTaaataagccgggtctcgctgTGGCTATTCTTTCCTCCTAGgcctggacca | ||||
| **************************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> | ENSRNOT00000039235 ENSRNOG00000037512 | ||||
| rat | .((...((((.....(((.(((((((..(((((.....(((((.((.(((......)))..))...)))))..)))))))))))).))).))))...)). | 0.690 -28.50 | |||
| rat | chromosome:5:138869675:138869774:-1 | Same_strand|Intronic_coding|ENSRNOT00000039235|ENSRNOG00000037512 ## ENSRNOG00000037512|protein_coding|| |
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