other hairpins
novel_cloningOK_loopOverlap_nonpairedHIGH (7 loci)
block2311384 [novel_cloningOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.116 | no | no | 0.42/0.53 | 19/23/0.70 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 5 1 2 | 0 0 0 | 2 1 1 | 0 0 0 | 13 5 0 | -4 4 13 | 3arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.43 0.52 0.56 | 3 9 9 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------CACAGAA---------------------------- | 6 | novel | |
| seed | --------------------------------------------ACUGUAG----------- | 2 | novel | |
| seed | -----------------------------------CGCCACC-------------------- | 1 | novel | |
| seed | -------------------------AUCACAG------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------TCACAGAATCGCCACCATACTGT------------- | 23 | - | 5 | |
| -------------------------------------------TACTGTAGTACCACGGAAT | 19 | - | 2 | |
| ----------------------------------TCGCCACCATACTGTAGTACCAC----- | 23 | 1 | - | |
| ------------------------CATCACAGAATCGCCACCA------------------- | 19 | - | 1 | |
| --------------------------TCACAGAATCGCCACCATACTG-------------- | 22 | 1 | - | |
| rat | attcccagagtggggccctctcaccaTCACAGAATCGCCACCATACTGTAGTACCACGGAAT | |||
| ************************************************************** | ||||
| rat | ((((((((.(((((((..(((.........)))...))).)))).))).........))))) | 0.970 -13.70 | ||
| rat | chromosome:8:57714121:57714182:-1 | intergenic |
block1600581 [novel_cloningOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.709 | no | no | 0.47/0.53 | 19/23/0.92 | 0.2 | 0.5 | 17 | 0 | 3 | 0 | 18 | -4 | 5arm_loop_3arm | 1 | nd | 0.38 | 3 | 24 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------GAACUAA------------------------------------------------- | 15 | novel | ||
| seed | --------------------AACUAAC------------------------------------------------ | 4 | novel | ||
| seed | ----------------GCUGAAC---------------------------------------------------- | 2 | novel | ||
| seed | ----------------------CUAACAU---------------------------------------------- | 2 | novel | ||
| seed | ------------------------AACAUGG-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T5S1 | |||
| ------------------TGAACTAACATGGCAGGTCTGAC---------------------------------- | 23 | 1 | - | 10 | |
| ------------------TGAACTAACATGGCAGGTCTG------------------------------------ | 21 | - | - | 4 | |
| -------------------GAACTAACATGGCAGGTCTGAC---------------------------------- | 22 | - | 1 | 3 | |
| ---------------------ACTAACATGGCAGGTCTGAC---------------------------------- | 20 | - | - | 2 | |
| ---------------TGCTGAACTAACATGGCAG----------------------------------------- | 19 | - | - | 1 | |
| -----------------------TAACATGGCAGGTCTGACG--------------------------------- | 19 | - | - | 1 | |
| ---------------TGCTGAACTAACATGGCAGGTCT------------------------------------- | 23 | - | - | 1 | |
| rat | ctaatcaagactgcttgcTGAACTAACATGGCAGGTCTGACggactcccagttttttctttcggtgatgagaagg | ||||
| *************************************************************************** | |||||
| rat | ((..(((..((((......(((..(((.(((..((((.....)))).))))))..)))...))))..)))..)). | 0.710 -15.20 | |||
| rat | chromosome:4:164243380:164243454:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_shortStem (7 loci)
block2551375 [novel_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.590 | no | no | 0.19/0.59 | 18/23/0.90 | 0.0 0.0 0.3 0.0 0.8 0.0 | 0.5 0.0 0.0 0.0 3.3 0.0 | 21 1 3 1 6 1 | 0 0 0 0 0 0 | 4 1 1 1 1 1 | 0 0 0 0 0 0 | 4 15 20 28 18 12 | 11 4 -3 -12 -22 3 | 5arm 5arm 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 2 2 2 2 2 4 | nd nd nd nd nd nd | 0.30 0.32 0.43 0.36 0.21 0.20 | 3 3 4 5 2 2 | 41 | 4 | -14 | -15 |
| reads | miRBase family seed | |||||
| seed | -----GGAUUAA------------------------------------------------------------------ | 29 | novel | |||
| seed | --------------------------------------ACAACGC--------------------------------- | 4 | novel | |||
| seed | ---------------------UAAACUA-------------------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------CGCAGGG----------------------------- | 1 | novel | |||
| seed | ----------------------AAACUAU------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------UCGUCCC------------------------------------------ | 1 | novel | |||
| seed | ----------------UUUAUUA------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------GGAUUUG------------------------ | 1 | novel | |||
| seed | ---------------------------------------CAACGCA-------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ----AGGATTAACGATTTTATTAAAC---------------------------------------------------- | 22 | 2 | 1 | 2 | 10 | |
| ----AGGATTAACGATTTTATTAAACT--------------------------------------------------- | 23 | 1 | - | - | 11 | |
| --------------------TTAAACTATTCGTCCCGTACA------------------------------------- | 21 | - | - | - | 2 | |
| ---------------TTTTATTAAACTATTCGTC-------------------------------------------- | 19 | - | - | - | 1 | |
| -------------------------------------TACAACGCAGGGATTTGTAGA-------------------- | 21 | - | - | - | 1 | |
| -------------------------------------TACAACGCAGGGATTTGT----------------------- | 18 | - | - | - | 1 | |
| ----AGGATTAACGATTTTATTAAA----------------------------------------------------- | 21 | - | - | 1 | - | |
| ---------------------TAAACTATTCGTCCCGTACA------------------------------------- | 20 | - | - | - | 1 | |
| ----------------------------TTCGTCCCGTACAACGCAGGGA---------------------------- | 22 | - | - | - | 1 | |
| ----AGGATTAACGATTTTATTA------------------------------------------------------- | 19 | - | - | - | 1 | |
| -------------------------------------TACAACGCAGGGATTTGTAG--------------------- | 20 | - | - | - | 1 | |
| -------------------------------------TACAACGCAGGGATTTGTAGAGT------------------ | 23 | - | - | - | 1 | |
| -----------------------------------------ACGCAGGGATTTGTAGAGT------------------ | 19 | - | - | - | 1 | |
| --------------------------------------ACAACGCAGGGATTTGTAGAGT------------------ | 22 | - | - | - | 1 | |
| ----------------------------------------------GGGATTTGTAGAGTACAACT------------ | 20 | - | - | - | 1 | |
| rat | aaggAGGATTAACGATTTTATTAAACTattcgtcccgtacaacgcagggatttgtagagtacaacttgggaacttttt | |||||
| ****************************************************************************** | ||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | |||||
| rat | .((((((.((..(((((.((((...((((..(((((((.....)).)))))..)))))))).)).)))..)))))))) | 0.940 -13.00 | ||||
| rat | chromosome:9:105315296:105315373:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000047326|ENSRNOG00000037286 ## ENSRNOG00000037286|protein_coding|LOC367336| |
sblock3395 [novel_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.306 | no | no | 0.38/0.58 | 18/25/0.76 | 0.6 1.5 0.0 | 0.0 1.0 0.0 | 16 2 1 | 0 0 0 | 7 1 1 | 0 0 0 | 2 12 1 | 18 -1 15 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.46 0.17 0.33 | 4 3 6 | 34 | 7 | -12 | -9 |
| reads | miRBase family seed | ||||||||
| seed | -----CCCAGGC-------------------------------------------------------------------------- | 18 | novel | ||||||
| seed | ---CUCCCAG---------------------------------------------------------------------------- | 8 | novel | ||||||
| seed | --------------ACAAACC----------------------------------------------------------------- | 2 | novel | ||||||
| seed | --------AGGCGAA----------------------------------------------------------------------- | 2 | novel | ||||||
| seed | ------CCAGGCG------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------------GUGUUCU-------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------GUCAGCC--------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------GCUGUCA------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| ----TCCCAGGCGAACAAACCAGACA------------------------------------------------------------ | 22 | - | 1 | 1 | 1 | - | - | 11 | |
| --TCTCCCAGGCGAACAAACCAGACA------------------------------------------------------------ | 24 | - | - | 1 | - | - | - | 5 | |
| -------------AACAAACCAGACATCGGTG------------------------------------------------------ | 19 | - | 1 | - | - | - | - | 1 | |
| -------CAGGCGAACAAACCAGACATCGGTG------------------------------------------------------ | 25 | - | - | - | - | - | - | 2 | |
| -----CCCAGGCGAACAAACCAGA-------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | |
| ----TCCCAGGCGAACAAACCAGACAT----------------------------------------------------------- | 23 | - | - | - | - | - | 1 | - | |
| ----TCCCAGGCGAACAAACCAGAC------------------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | |
| ----TCCCAGGCGAACAAACCA---------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------TGTGTTCTCTTTCATTCAGAG- | 21 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------TGCTGTCAGCCGCCACTGTGTTCT-------------- | 24 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------TGTCAGCCGCCACTGTGTTCTCT------------ | 23 | - | - | - | - | - | - | 1 | |
| ----TCCCAGGCGAACAAACCAG--------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| --TCTCCCAGGCGAACAAACC----------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| --TCTCCCAGGCGAACAAACCAGAC------------------------------------------------------------- | 23 | - | - | - | - | 1 | - | - | |
| rat | ccTCTCCCAGGCGAACAAACCAGACAtcggtgccctgtgactgcaacctgctgtcagccgccactgtgttctctttcattcagagg | ||||||||
| ************************************************************************************** | |||||||||
| rat | (((((...(((.(((((...(((....((((......((((.((.....)).))))))))...)))))))).)))......))))) | 0.740 -21.40 | |||||||
| rat | chromosome:12:5606853:5606938:1 | intergenic |
sblock3397 [novel_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.235 | no | no | 0.40/0.55 | 18/25/0.76 | 0.0 0.0 0.0 0.0 | 1.4 1.5 0.0 2.5 | 13 2 2 2 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 2 11 27 7 | 4 -3 -19 1 | 5arm 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.27 0.26 0.55 0.35 | 2 2 7 3 | 21 | 2 | -5 | -5 |
| reads | miRBase family seed | |||
| seed | ---CAGAAAU------------------------------------------------------------ | 15 | novel | |
| seed | ----------------------------AGCUCAG----------------------------------- | 2 | novel | |
| seed | ------------CCGCAGG--------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------GGAAACU------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| --TCAGAAATATCCGCAGGACTCAGA-------------------------------------------- | 24 | - | 6 | |
| --TCAGAAATATCCGCAGGACTCA---------------------------------------------- | 22 | - | 3 | |
| --TCAGAAATATCCGCAGGAC------------------------------------------------- | 19 | - | 2 | |
| --TCAGAAATATCCGCAGGACTCAG--------------------------------------------- | 23 | - | 2 | |
| ---------------------------TAGCTCAGAACTGGAAACTGGT--------------------- | 22 | 2 | - | |
| --TCAGAAATATCCGCAGGACT------------------------------------------------ | 20 | - | 1 | |
| --------------------------------------TGGAAACTGGTTCTTGTGCT------------ | 20 | - | 1 | |
| -----------TCCGCAGGACTCAGATTAGCTC------------------------------------- | 22 | - | 1 | |
| --TCAGAAATATCCGCAGGA-------------------------------------------------- | 18 | - | 1 | |
| --------------------------------------TGGAAACTGGTTCTTGTGCTATATG------- | 25 | - | 1 | |
| -----------TCCGCAGGACTCAGATTAG---------------------------------------- | 19 | - | 1 | |
| rat | tcTCAGAAATATCCGCAGGACTCAGAtTAGCTCAGAACTGGAAACTGGTtcttgtgctatatgccttaga | |||
| ********************************************************************** | ||||
| rat | (((.((..((((.(((((((..(((.((((.......))))...)))..)))))))..))))..)).))) | 0.910 -14.70 | ||
| rat | chromosome:12:5607628:5607697:1 | intergenic |
sblock3843 [novel_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.085 | no | no | 0.40/0.67 | 19/24/0.90 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 5 | 0 0 0 0 | 1 1 1 2 | 0 0 0 0 | 22 40 46 3 | 3 -10 -18 19 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.42 0.63 0.43 0.25 | 4 6 6 3 | 10 | 2 | 20 | 16 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------GCACUUG--------------- | 5 | novel | |
| seed | -----------------------------------------------GGCAAGC------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------UGCACUU---------------- | 1 | novel | |
| seed | -----------------------------------------GGACAUG------------------------------------------------- | 1 | novel | |
| seed | -----------------------GCUUCCA------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------UUGCACU----------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------------TGCACTTGTTCCATTAGAGT--- | 20 | - | 5 | |
| ----------------------------------------------TGGCAAGCACCACGCAGTCCC------------------------------ | 21 | - | 1 | |
| ------------------------------------------------------------------------GTTGCACTTGTTCCATTAGAGT--- | 22 | - | 1 | |
| -------------------------------------------------------------------------TTGCACTTGTTCCATTAGAGTTCC | 24 | 1 | - | |
| ----------------------TGCTTCCAAGCGAGCGACTGGACA--------------------------------------------------- | 24 | - | 1 | |
| ----------------------------------------TGGACATGGCAAGCACCAC-------------------------------------- | 19 | - | 1 | |
| rat | agaaccgaaggaaagaaaagaatgcttccaagcgagcgactggacatggcaagcaccacgcagtcccgctcggtTGCACTTGTTCCATTAGAGTtcc | |||
| ************************************************************************************************* | ||||
| rat | .((((..((((((....(((..(((..((.((((...(((((....(((......)))..))))).)))).))..)))))).)))).))...)))). | 0.880 -26.10 | ||
| rat | chromosome:13:37641332:37641428:1 | intergenic |
sblock6436 [novel_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.078 | no | no | 0.38/0.42 | 19/22/0.86 | 0.0 0.0 | 0.0 0.0 | 1 9 | 0 0 | 1 4 | 0 0 | 0 4 | 18 0 | 5arm 3arm | 1 1 | nd nd | 0.43 0.18 | 4 3 | 14 | 4 | -14 | -6 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------CCUUUAC------------------ | 13 | novel | |||
| seed | -UACUUAG--------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S2 | T5S1 | T5S2 | |||
| ---------------------------------------------TCCTTTACTCTCCAAACACAGT---- | 22 | 1 | 1 | 9 | - | |
| ---------------------------------------------TCCTTTACTCTCCAAACAC------- | 19 | - | - | 1 | 1 | |
| TTACTTAGCATCTGTGCATCT-------------------------------------------------- | 21 | - | - | 1 | - | |
| rat | ttacttagcatctgtgcatcttggagctgagctttaggactacatTCCTTTACTCTCCAAACACAGTaggt | |||||
| *********************************************************************** | ||||||
| rat | ..(((((....(((((....(((((...(((....((((......))))...)))))))).)))))))))) | 0.910 -15.70 | ||||
| rat | chromosome:2:121197666:121197736:1 | intergenic |
sblock7992 [novel_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.134 | no | no | 0.32/0.48 | 19/21/0.83 | 0.8 0.0 0.0 0.0 | 1.1 0.0 0.0 0.0 | 8 2 1 1 | 0 0 0 0 | 3 2 1 1 | 0 0 0 0 | 0 14 28 0 | 8 -3 -16 5 | 5arm 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.25 0.48 0.65 0.20 | 2 4 13 2 | 12 | 3 | -1 | 0 |
| reads | miRBase family seed | ||||
| seed | ----AACUUCA------------------------------------------------------------ | 5 | novel | ||
| seed | ---------------AAUCCUU------------------------------------------------- | 2 | novel | ||
| seed | --CUAACUU-------------------------------------------------------------- | 1 | novel | ||
| seed | -UCUAACU--------------------------------------------------------------- | 1 | novel | ||
| seed | ---UAACUUC------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------GGAUCAU----------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------GCCAGGG------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| ---TAACTTCAGTCTAATCCTTG------------------------------------------------ | 20 | - | 1 | 3 | |
| --------------TAATCCTTGCTACTTGGATCA------------------------------------ | 21 | 1 | - | 1 | |
| --------------------------------------------------TGCCAGGGTGATAGAGTTAAC | 21 | - | - | 1 | |
| ----------------------------TGGATCATGGTCTTTTCTCC----------------------- | 20 | - | - | 1 | |
| ---TAACTTCAGTCTAATCCTTGC----------------------------------------------- | 21 | 1 | - | - | |
| --CTAACTTCAGTCTAATCCT-------------------------------------------------- | 19 | - | - | 1 | |
| TTCTAACTTCAGTCTAATC---------------------------------------------------- | 19 | 1 | - | - | |
| -TCTAACTTCAGTCTAATCCT-------------------------------------------------- | 20 | - | - | 1 | |
| rat | TTCTAACTTCAGTCTAATCCTTGCTACTTGGATCATGGTCTTTTCTCCacTGCCAGGGTGATAGAGTTAAC | ||||
| *********************************************************************** | |||||
| rat | ...((((((..(((..(((((.((....((((.............))))..)).)))))))).)))))).. | 0.990 -14.02 | |||
| rat | chromosome:3:76947736:76947806:1 | intergenic |
sblock9436 [novel_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.593 | no | no | 0.47/0.60 | 19/25/0.75 | 2.0 1.5 0.8 | 1.2 1.5 0.6 | 4 2 18 | 0 0 0 | 1 1 4 | 0 0 0 | 1 24 1 | 10 -13 5 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.48 0.48 0.25 | 4 5 2 | 28 | 4 | -5 | -2 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------CCUACUC--------------- | 17 | novel | |||
| seed | -------------------------------------------------ACUCAAA------------ | 5 | novel | |||
| seed | --CCGUCAU----------------------------------------------------------- | 2 | novel | |||
| seed | ------CAUGAAG------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------UCCAGGC--------------------------------- | 1 | novel | |||
| seed | -------------------------GGGUCCA------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| ---------------------------------------------TCCTACTCAAAGCAGCAGTG--- | 20 | 2 | 1 | 1 | 13 | |
| ------------------------------------------------TACTCAAAGCAGCAGTGGA- | 19 | - | - | - | 5 | |
| -TCCGTCATGAAGGTTCCCGGAT--------------------------------------------- | 22 | - | - | - | 2 | |
| ------------------------TGGGTCCAGGCCAGTTGGCAATCCT------------------- | 25 | - | - | - | 1 | |
| -----TCATGAAGGTTCCCGGATGT------------------------------------------- | 20 | - | - | - | 1 | |
| ---------------------------GTCCAGGCCAGTTGGCAAT---------------------- | 19 | - | - | - | 1 | |
| -----TCATGAAGGTTCCCGGATGTG------------------------------------------ | 21 | - | - | - | 1 | |
| rat | gtccgtcatgaaggttcccggatgtgggtccaggccagttggcaaTCCTACTCAAAGCAGCAGTGGAt | |||||
| ******************************************************************** | ||||||
| rat | (((((...((...(((....((.(((((.....(((....)))...)))))))..)))..)).))))) | 0.900 -18.20 | ||||
| rat | chromosome:5:114557278:114557345:-1 | intergenic |
novel_cloningOK_shortStem_nonpairedHIGH (7 loci)
block383047 [novel_cloningOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.653 | no | no | 0.30/0.32 | 19/20/0.80 | 0.2 | 0.0 | 10 | 0 | 7 | 0 | 4 | 28 | 3arm | 1 | nd | 0.32 | 2 | 10 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------------------------ACAACAG---------------- | 8 | novel | ||||||
| seed | ---------------------------------------------------------------------------CAACAGG--------------- | 2 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------------AACAACAGGAAATGTTTAAG---- | 20 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | |
| --------------------------------------------------------------------------ACAACAGGAAATGTTTAAG---- | 19 | - | - | - | 1 | 1 | - | - | |
| rat | tcctggaatattccgagtgctattctcctttgggcctagggcacagtcgctataatcaggggaaaacaaacgaAACAACAGGAAATGTTTAAGagag | ||||||||
| ************************************************************************************************* | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033194 ENSRNOG00000002099 Wdfy3_predicted | ||||||||
| rat | ((((.(((((((((..((....(((((((((((...((((((...))).)))...))))))))........)))...)).)))).))))).)).)). | 0.730 -18.80 | |||||||
| rat | chromosome:14:8897688:8897784:1 | Same_strand|Intronic_non-coding|ENSRNOT00000033194|ENSRNOG00000002099 ## Same_strand|Boundary_non-coding|ENSRNOT00000002880|ENSRNOG00000002099 ## ENSRNOG00000002099|protein_coding|Wdfy3_predicted| |
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