other hairpins
novel_lenNOK_cloningHIGH_loopOverlap_randfoldOK (7 loci)
novel_lenNOK_cloningHIGH_multiarm (7 loci)
block25141 [novel_lenNOK_cloningHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.44/0.63 | 18/25/0.39 | 0.3 0.0 | 0.0 0.0 | 68 1 | 0 0 | 9 1 | 0 0 | 11 31 | 1 -17 | 5arm_loop_3arm 5arm_loop_3arm | 1 1 | nd nd | 0.30 0.50 | 3 9 | 122 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | -------------GCAAAGG------------------------------------------------ | 58 | novel | ||||||||
| seed | ------------GGCAAAG------------------------------------------------- | 33 | novel | ||||||||
| seed | -----------GGGCAAA-------------------------------------------------- | 7 | novel | ||||||||
| seed | ------GCCGAGG------------------------------------------------------- | 4 | novel | ||||||||
| seed | ----AAGCCGA--------------------------------------------------------- | 4 | novel | ||||||||
| seed | --------------------AUCAGUC----------------------------------------- | 3 | novel | ||||||||
| seed | ---------------------------CUUGCAU---------------------------------- | 2 | novel | ||||||||
| seed | -----AGCCGAG-------------------------------------------------------- | 2 | novel | ||||||||
| seed | ---GAAGCCG---------------------------------------------------------- | 2 | novel | ||||||||
| seed | -----------------------AGUCCUU-------------------------------------- | 1 | novel | ||||||||
| seed | --------------------------------AUUCUGA----------------------------- | 1 | novel | ||||||||
| seed | --------------------------CCUUGCA----------------------------------- | 1 | novel | ||||||||
| seed | ----------------------CAGUCCU--------------------------------------- | 1 | novel | ||||||||
| seed | -----------------AGGAUCA-------------------------------------------- | 1 | novel | ||||||||
| seed | -------CCGAGGG------------------------------------------------------ | 1 | novel | ||||||||
| seed | ------------------------GUCCUUG------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------GGCAAAGGATCAGTCCTTG------------------------------------- | 19 | 2 | 3 | - | 20 | 14 | 1 | 1 | 7 | 8 | |
| -----------GGGCAAAGGATCAGTCCTTG------------------------------------- | 20 | 3 | 4 | 2 | 12 | 7 | 3 | - | 2 | - | |
| ----------AGGGCAAAGGATCAGTCCT--------------------------------------- | 19 | - | - | 2 | 3 | 2 | - | - | - | - | |
| ---GAAGCCGAGGGCAAAGGATCAGTC----------------------------------------- | 24 | - | - | - | 3 | 1 | - | - | - | - | |
| -----AGCCGAGGGCAAAGGATCAGTC----------------------------------------- | 22 | - | - | - | 3 | 1 | - | - | - | - | |
| --GGAAGCCGAGGGCAAAGGA----------------------------------------------- | 19 | - | - | - | 1 | - | - | - | 1 | - | |
| --------------------------CCTTGCATTCTGAGAGCA------------------------ | 18 | - | - | - | - | 2 | - | - | - | - | |
| ----AAGCCGAGGGCAAAGGATCAGTC----------------------------------------- | 23 | - | - | - | 1 | - | - | - | 1 | - | |
| -------------------GATCAGTCCTTGCATTCTGAGAG-------------------------- | 23 | - | - | - | - | - | 2 | - | - | - | |
| ------GCCGAGGGCAAAGGATCAGTC----------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------TCAGTCCTTGCATTCTGAGA--------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | |
| ------------GGCAAAGGATCAGTCCTTGCATTCT------------------------------- | 25 | - | - | - | - | 1 | - | - | - | - | |
| ------------GGCAAAGGATCAGTCCTT-------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | - | |
| -------------------------------CATTCTGAGAGCAGACTG------------------- | 18 | - | - | - | - | 1 | - | - | - | - | |
| -----------------------AGTCCTTGCATTCTGAGA--------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | |
| -------------------GATCAGTCCTTGCATTCTGAGAGCA------------------------ | 25 | - | - | - | - | 1 | - | - | - | - | |
| ----------------AAGGATCAGTCCTTGCATTCTG------------------------------ | 22 | - | - | - | - | 1 | - | - | - | - | |
| ----------------------CAGTCCTTGCATTCTGAGA--------------------------- | 19 | - | - | - | - | - | - | 1 | - | - | |
| -------------------------TCCTTGCATTCTGAGAGCA------------------------ | 19 | - | - | - | 1 | - | - | - | - | - | |
| rat | agggaagccgaGGGCAAAGGATCAGTCCTTGcattctgagagcagactgtctgccttctgcctgcctt | ||||||||||
| ******************************************************************** | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049048 ENSRNOG00000030628 Eif4a1 | ||||||||||
| rat | ((((..((.((((((...(((.(((((..(((.........))))))))))))))))).))...)))) | 0.450 -24.40 | |||||||||
| rat | chromosome:10:56486151:56486218:-1 | Same_strand|Intronic_coding|ENSRNOT00000049048|ENSRNOG00000030628 ## ENSRNOG00000030628|protein_coding|Eif4a1|eukaryotic translation initiation factor 4A1 [Source:RefSeq_peptide;Acc:NP_955404] |
sblock12451 [novel_lenNOK_cloningHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.129 | no | no | 0.26/0.45 | 18/24/0.43 | 0.0 0.5 | 0.0 0.5 | 183 2 | 0 0 | 10 2 | 0 0 | 13 20 | 3 -19 | 5arm_loop 3arm_loop | 2 2 | nd nd | 0.32 0.25 | 4 2 | 474 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------UUCAAUG------------------------------------------------------ | 403 | novel | |||||||||
| seed | ---------------UCAAUGA----------------------------------------------------- | 69 | novel | |||||||||
| seed | -----------------------------------CUUGCCU--------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------UUGCCUG-------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------GTTCAATGATGATTTCTGA------------------------------------------- | 19 | 13 | 2 | 6 | 15 | 69 | 40 | 8 | 3 | 33 | 41 | |
| -------------GTTCAATGATGATTTCTGATGCC--------------------------------------- | 23 | - | - | 6 | 4 | 7 | 18 | - | 2 | 4 | 14 | |
| -------------GTTCAATGATGATTTCTGAT------------------------------------------ | 20 | 1 | 2 | 1 | 2 | 12 | 13 | 3 | 1 | 3 | 16 | |
| --------------TTCAATGATGATTTCTGATG----------------------------------------- | 20 | 1 | 1 | 5 | 4 | 8 | 9 | 3 | 1 | 7 | 3 | |
| -------------GTTCAATGATGATTTCTGATGCCT-------------------------------------- | 24 | 2 | - | 6 | - | 9 | 6 | 1 | - | - | 6 | |
| -------------GTTCAATGATGATTTCTG-------------------------------------------- | 18 | - | - | - | 1 | 2 | 11 | 2 | - | 1 | 7 | |
| --------------TTCAATGATGATTTCTGAT------------------------------------------ | 19 | - | - | - | 3 | 6 | 1 | - | 1 | - | 5 | |
| -------------GTTCAATGATGATTTCTGATGC---------------------------------------- | 22 | - | 1 | 2 | - | - | 1 | - | 3 | 1 | 2 | |
| --------------TTCAATGATGATTTCTGATGCC--------------------------------------- | 22 | 2 | - | - | - | 1 | 1 | - | - | - | 3 | |
| --------------TTCAATGATGATTTCTGATGCCT-------------------------------------- | 23 | - | - | - | - | 2 | - | - | - | - | - | |
| --------------TTCAATGATGATTTCTGA------------------------------------------- | 18 | - | - | - | - | - | 1 | - | - | - | 1 | |
| -----------------------------------CTTGCCTGAGTTCATTTTGA-------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------CCTTGCCTGAGTTCATTTTG--------------------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| rat | ctggagaccatgtGTTCAATGATGATTTCTGAtgccttgcctgagttcattttgaataatgagggcagcttcagt | |||||||||||
| *************************************************************************** | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000022676 ENSRNOG00000016486 Nol5 | |||||||||||
| rat | ((((((.((...(((((((.(((((.(((....((...))..))).)))))))))))).....))...)))))). | 0.950 -18.70 | ||||||||||
| rat | chromosome:9:58272417:58272491:1 | Same_strand|Intronic_coding|ENSRNOT00000022676|ENSRNOG00000016486 ## ENSRNOG00000016486|protein_coding|Nol5|Nucleolar protein 5 (Nucleolar protein NOP5) (Nopp140-associated protein of 65 kDa). [Source:UniProtKB/Swiss-Prot;Acc:Q9QZ86] |
sblock12548 [novel_lenNOK_cloningHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.419 | no | no | 0.37/0.58 | 18/26/0.03 | 0.0 2.5 0.0 0.0 1.0 | 0.0 2.5 0.0 0.0 1.0 | 65 2 4 1 2 | 0 0 0 0 0 | 7 1 2 1 1 | 0 0 0 0 0 | 7 19 23 11 4 | 16 -3 -2 10 15 | 5arm 5arm_loop 3arm_loop 3arm 3arm | 1 1 3 3 3 | nd nd nd nd nd | 0.32 0.29 0.37 0.32 0.21 | 4 3 3 3 1 | 91 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | --------CAGGUAG--------------------------------------------------------------------------- | 78 | novel | |||||||
| seed | -------------------------------------------------UGUAGCU---------------------------------- | 5 | novel | |||||||
| seed | -GGGAACU---------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | --------------------------------------------------------------------UUGAGGC--------------- | 1 | novel | |||||||
| seed | -------------------------------------------------------------GACCUAU---------------------- | 1 | novel | |||||||
| seed | --------------------CUAAGAU--------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------AUUCAGA---------------------------------------------------------- | 1 | miR-871 | |||||||
| seed | ------------------------------------------------------------------AUUUGAG----------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S2 | T5S1 | T5S2 | |||
| -------TCAGGTAGAATGTCTAAGA---------------------------------------------------------------- | 19 | 7 | 2 | 1 | 1 | 1 | - | 65 | 1 | |
| ------------------------------------------------TTGTAGCTCTCAGGACCTA----------------------- | 19 | - | - | - | - | - | 1 | 4 | - | |
| TGGGAACTCAGGTAGAATGTCTAAGA---------------------------------------------------------------- | 26 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------TTTGAGGCAGACGTGAGGG---- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------GATTCAGAAGCAGCTGGCTGT--------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| TGGGAACTCAGGTAGAATGTC--------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| -------------------TCTAAGATTCAGAAGCAGCTG-------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------TATTTGAGGCAGACGTGAG------ | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------GGACCTATTTGAGGCAGAC----------- | 19 | - | - | - | - | - | - | 1 | - | |
| TGGGAACTCAGGTAGAAT------------------------------------------------------------------------ | 18 | - | - | - | - | - | - | 1 | - | |
| rat | tgggaacTCAGGTAGAATGTCTAAGAttcagaagcagctggctgtcccttgtagctctcaggacctatttgaggcagacgtgagggcctg | |||||||||
| ****************************************************************************************** | ||||||||||
| ---------------------------------------------------------------------------------------------------- | ENSRNOT00000047066 ENSRNOG00000032758 Ndufv2 | |||||||||
| rat | .(((..((((.((....(((((.((((((...((.((((.((........))))))))...))...)))).))))).)).))))..))). | 0.430 -25.50 | ||||||||
| rat | chromosome:9:104944686:104944775:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000046356|ENSRNOG00000032758 ## Opposite_strand|Intronic_coding|ENSRNOT00000047066|ENSRNOG00000032758 ## ENSRNOG00000032758|protein_coding|Ndufv2|NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 24 kDa subunit). [Source:UniProtKB/Swiss-Prot;Acc:P19234] |
sblock2169 [novel_lenNOK_cloningHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.034 | no | no | 0.37/0.43 | 18/21/0.02 | 0.0 0.0 | 0.0 0.0 | 275 3 | 0 0 | 10 1 | 0 0 | 5 25 | 40 3 | 5arm 3arm | 1 1 | nd nd | 0.44 0.15 | 5 1 | 315 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ------AUUGCAC------------------------------------------------------------------------------------------------------ | 311 | miR-25/32/363/92a/92b | |||||||||
| seed | -----------------------------------------------------------------------CAUCUUU------------------------------------- | 3 | novel | |||||||||
| seed | -------UUGCACU----------------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----TATTGCACTTGTCCCTTA-------------------------------------------------------------------------------------------- | 18 | 13 | 4 | 41 | 48 | 55 | 31 | 30 | 50 | 10 | 20 | |
| -----TATTGCACTTGTCCCTTAT------------------------------------------------------------------------------------------- | 19 | - | - | 2 | 1 | 1 | - | 2 | - | - | 1 | |
| ----------------------------------------------------------------------GCATCTTTTGTAACTCACTG------------------------- | 20 | - | - | - | - | 3 | - | - | - | - | - | |
| -----TATTGCACTTGTCCCTTATG------------------------------------------------------------------------------------------ | 20 | - | - | - | - | - | - | 1 | - | - | - | |
| ------ATTGCACTTGTCCCTTAT------------------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| -----TATTGCACTTGTCCCTTATGG----------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | - | |
| rat | ttttcTATTGCACTTGTCCCTTAtggtgccacaatggatttgtgtgtggcagtgggtggaatgactgcatgcatcttttgtaactcactggtattataaagggagtttgagaaag | |||||||||||
| ******************************************************************************************************************* | ||||||||||||
| rat | .(((((...((.....(((((((((((((((..........(((.((.((((.(((((..(((....))).))))).)))).)).)))))))))))))).))))))...))))). | 0.890 -33.20 | ||||||||||
| rat | chromosome:1:211503014:211503128:1 | intergenic |
sblock8221 [novel_lenNOK_cloningHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.097 | no | no | 0.40/0.63 | 19/25/0.11 | 0.9 0.0 | 1.4 0.0 | 7 103 | 0 0 | 3 5 | 0 0 | 39 29 | -9 8 | 5arm_loop_3arm 3arm | 2 2 | nd nd | 0.25 0.16 | 4 2 | 132 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------------------GACUGGC---------------------------------------- | 118 | novel | |||||
| seed | -------------------------------------------AGCCAGU----------------------------------------------------------------- | 9 | novel | |||||
| seed | ------------------------------------------------------------CCACGGA------------------------------------------------ | 2 | novel | |||||
| seed | ----------------------------------------UAUAGCC-------------------------------------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------------------------CACAUCC----------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------TGACTGGCTGGAATAGATT----------------------------- | 19 | 8 | 3 | - | 1 | 1 | 103 | |
| ------------------------------------------TAGCCAGTTTGGACACATCCAC--------------------------------------------------- | 22 | 1 | - | 1 | - | - | 5 | |
| ---------------------------------------TTATAGCCAGTTTGGACACA-------------------------------------------------------- | 20 | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------TGACTGGCTGGAATAGATTTCC-------------------------- | 22 | - | - | - | - | - | 2 | |
| -----------------------------------------------------------TCCACGGATGACTGGCTGGAATAGA------------------------------- | 25 | - | - | - | - | - | 1 | |
| ------------------------------------------------------ACACATCCACGGATGACTGGCTGG------------------------------------- | 24 | - | - | - | - | - | 1 | |
| -----------------------------------------------------------TCCACGGATGACTGGCTGG------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------TAGCCAGTTTGGACACATCCACG-------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ------------------------------------------TAGCCAGTTTGGACACATCCA---------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| rat | gaggcaattaagaggttgtacattttactctttgaattattatagccagtttggacacatccacggaTGACTGGCTGGAATAGATTtccaaggatgaaatctcctgaaggttctc | |||||||
| ******************************************************************************************************************* | ||||||||
| rat | (((((..(((.((((((...((((.....(((.((((((((.(((((((((((((....)))).....))))))))).)))))..))).))))))).)))))).)))..)).))) | 0.780 -29.30 | ||||||
| rat | chromosome:3:141755286:141755400:1 | intergenic |
sblock8230 [novel_lenNOK_cloningHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.097 | no | no | 0.40/0.63 | 19/25/0.11 | 0.9 0.0 | 1.4 0.0 | 7 103 | 0 0 | 3 5 | 0 0 | 39 29 | -9 8 | 5arm_loop_3arm 3arm | 2 2 | nd nd | 0.25 0.16 | 4 2 | 132 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------------------GACUGGC---------------------------------------- | 118 | novel | |||||
| seed | -------------------------------------------AGCCAGU----------------------------------------------------------------- | 9 | novel | |||||
| seed | ------------------------------------------------------------CCACGGA------------------------------------------------ | 2 | novel | |||||
| seed | ----------------------------------------UAUAGCC-------------------------------------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------------------------CACAUCC----------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------TGACTGGCTGGAATAGATT----------------------------- | 19 | 8 | 3 | - | 1 | 1 | 103 | |
| ------------------------------------------TAGCCAGTTTGGACACATCCAC--------------------------------------------------- | 22 | 1 | - | 1 | - | - | 5 | |
| ---------------------------------------TTATAGCCAGTTTGGACACA-------------------------------------------------------- | 20 | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------TGACTGGCTGGAATAGATTTCC-------------------------- | 22 | - | - | - | - | - | 2 | |
| -----------------------------------------------------------TCCACGGATGACTGGCTGGAATAGA------------------------------- | 25 | - | - | - | - | - | 1 | |
| ------------------------------------------------------ACACATCCACGGATGACTGGCTGG------------------------------------- | 24 | - | - | - | - | - | 1 | |
| -----------------------------------------------------------TCCACGGATGACTGGCTGG------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------TAGCCAGTTTGGACACATCCACG-------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ------------------------------------------TAGCCAGTTTGGACACATCCA---------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| rat | gaggcaattaagaggttgtacattttactctttgaattattatagccagtttggacacatccacggaTGACTGGCTGGAATAGATTtccaaggatgaaatctcctgaaggttctc | |||||||
| ******************************************************************************************************************* | ||||||||
| rat | (((((..(((.((((((...((((.....(((.((((((((.(((((((((((((....)))).....))))))))).)))))..))).))))))).)))))).)))..)).))) | 0.780 -29.30 | ||||||
| rat | chromosome:3:141757095:141757209:1 | intergenic |
sblock9151 [novel_lenNOK_cloningHIGH_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.044 | no | no | 0.32/0.46 | 19/24/0.52 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 20 15 1 1 | 0 0 0 0 | 4 4 1 1 | 0 0 0 0 | 5 19 31 19 | 20 4 -2 9 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.42 0.38 0.35 0.29 | 4 5 5 3 | 61 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------GUUCACC------------------------------------------------------------------------------------ | 28 | novel | ||||
| seed | --------------------AAGAUAC---------------------------------------------------------------------- | 18 | novel | ||||
| seed | --CCCUGUU---------------------------------------------------------------------------------------- | 5 | novel | ||||
| seed | ---------------UCAGUAA--------------------------------------------------------------------------- | 3 | novel | ||||
| seed | ---------CACCUUU--------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------ACCAGAC----------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCCAGCU------------------------------------------- | 1 | novel | ||||
| seed | ---CCUGUUC--------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------GUGUUUG-------------------------------- | 1 | novel | ||||
| seed | ---------------------AGAUACC--------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------CAGUAAG-------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T5S1 | T5S2 | |||
| -----TGTTCACCTTTCAGTAAGA------------------------------------------------------------------------- | 19 | 1 | 3 | 1 | 20 | - | |
| -------------------TAAGATACCAGACATATGACT--------------------------------------------------------- | 21 | - | - | - | 15 | 1 | |
| -TCCCTGTTCACCTTTCAGTAAGA------------------------------------------------------------------------- | 23 | - | - | - | 5 | - | |
| -----TGTTCACCTTTCAGTAAGATACC--------------------------------------------------------------------- | 23 | - | - | - | 3 | - | |
| --------------TTCAGTAAGATACCAGACA---------------------------------------------------------------- | 19 | - | - | - | 3 | - | |
| -------------------TAAGATACCAGACATATGACTA-------------------------------------------------------- | 22 | - | 1 | - | 1 | - | |
| ---------------------------------------------------------TGTGTTTGTTGCATTGCATTT------------------- | 21 | - | - | - | 1 | - | |
| --CCCTGTTCACCTTTCAGTAAGA------------------------------------------------------------------------- | 22 | - | - | - | 1 | - | |
| ----------------------------------------------TCCCAGCTTAATGTGTTTGT------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------------TACCAGACATATGACTATGGCCTC------------------------------------------------- | 24 | - | - | 1 | - | - | |
| --------------------AAGATACCAGACATATGACT--------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| --------TCACCTTTCAGTAAGATACCAG------------------------------------------------------------------- | 22 | - | - | - | 1 | - | |
| ---------------TCAGTAAGATACCAGACAT--------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| rat | gtcccTGTTCACCTTTCAGTAAGATACCAGACATATGACTatggcctcccagcttaatgtgtttgttgcattgcatttgtgtgtgtgttcaggtaca | ||||||
| ************************************************************************************************* | |||||||
| rat | ((.((((..(((....((((((..((.(((((((((.....(((....))).....))))))))).))..))))...)).....)))..)))).)). | 0.490 -24.90 | |||||
| rat | chromosome:4:164283904:164284000:1 | intergenic |
novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH (7 loci)
block147350 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.26/0.28 | 18/19/0.00 | 0.0 | 0.0 | 77 | 0 | 6 | 0 | 5 | 37 | 3arm | 1 | nd | 0.44 | 2 | 90 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------------------------------------------------UUUCCAA--------------- | 90 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------------------------------------CTTTCCAATTAAGTTCTT----- | 18 | 34 | 1 | 7 | 3 | - | 43 | |
| -------------------------------------------------------------------------------------------------CTTTCCAATTAAGTTCTTT---- | 19 | - | - | 1 | - | 1 | - | |
| rat | gtcttgcagttcttgtctgtgagttccaggttcttgaggtgagggaggccttggcctattgcttactctttcttctgaggaactttgacttctggaaCTTTCCAATTAAGTTCTTtgatg | |||||||
| ************************************************************************************************************************ | ||||||||
| rat | (((....((..((((..((.(((((((((((((((.(((.(((((((.....(((.....)))..))))))).))).))))))........)))))))))..))..))))..))..))). | 0.650 -36.70 | ||||||
| rat | chromosome:11:15949888:15950007:1 | intergenic |
block175828 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.56 | 18/22/0.69 | 0.1 | 1.1 | 51 | 0 | 9 | 0 | 28 | 2 | 3arm | 1 | nd | 0.33 | 2 | 67 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | -----------------------------------------------------------------UAGCACC------------------------------------------ | 54 | novel | ||||||||
| seed | ------------------------------------------------------------------AGCACCA----------------------------------------- | 13 | miR-29a/29b/29c | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------TTAGCACCACCAGGAAGTCTCA---------------------------- | 22 | 3 | - | 5 | 6 | 1 | 2 | 1 | 1 | 2 | |
| ----------------------------------------------------------------TTAGCACCACCAGGAAGTC------------------------------- | 19 | 1 | 3 | 2 | 4 | 1 | - | 3 | - | 1 | |
| ----------------------------------------------------------------TTAGCACCACCAGGAAGTCTC----------------------------- | 21 | 4 | 6 | 1 | 1 | 1 | - | 2 | - | - | |
| -----------------------------------------------------------------TAGCACCACCAGGAAGTCTCA---------------------------- | 21 | 1 | - | 1 | 2 | - | 2 | - | 1 | - | |
| -----------------------------------------------------------------TAGCACCACCAGGAAGTC------------------------------- | 18 | - | - | - | 3 | - | 1 | - | - | - | |
| ----------------------------------------------------------------TTAGCACCACCAGGAAGT-------------------------------- | 18 | - | - | - | - | - | - | 2 | - | - | |
| -----------------------------------------------------------------TAGCACCACCAGGAAGTCTC----------------------------- | 20 | 1 | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------TTAGCACCACCAGGAAGTCT------------------------------ | 20 | 1 | - | - | - | - | - | - | - | - | |
| rat | caacttaaccttcttcctcttatgcttattcttcatgggggtggtataagacttcttccttttcTTAGCACCACCAGGAAGTCTCAgcatgagatggagagtggactactgttg | ||||||||||
| ****************************************************************************************************************** | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002498 ENSRNOG00000001825 Pkp2 | ||||||||||
| rat | ((((....((((((((.(((((((((....((((.....((((((.(((((...........)))))..))))))..))))....))))))))).)))))).))......)))) | 0.990 -39.20 | |||||||||
| rat | chromosome:11:86511933:86512046:1 | Same_strand|Intronic_non-coding|ENSRNOT00000002498|ENSRNOG00000001825 ## ENSRNOG00000001825|protein_coding|Pkp2|Pkp2 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q562C0] |
block271999 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.47/0.53 | 18/19/0.00 | 0.0 | 0.0 | 41 | 0 | 10 | 0 | 19 | 8 | 3arm | 1 | nd | 0.33 | 2 | 58 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------------------------------GGAGAGG----------------------------- | 57 | novel | |||||||||
| seed | ---------------------------------------------------------UGGAGAG------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------TGGAGAGGGGAAACTGAA------------------- | 18 | 2 | 13 | 1 | 1 | 2 | 1 | 11 | 5 | 17 | 2 | |
| ---------------------------------------------------------TGGAGAGGGGAAACTGAAG------------------ | 19 | - | - | - | - | - | 2 | - | - | - | - | |
| --------------------------------------------------------TTGGAGAGGGGAAACTGAA------------------- | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| rat | acagagcggaagaggcgtggtcagactctcacctccttccggtcctagaggacatttTGGAGAGGGGAAACTGAAgccgcgcttctgtcctgtc | |||||||||||
| ********************************************************************************************** | ||||||||||||
| rat | ((((..((((...(((((((((((..((((..((((.....((((....)))).....))))..))))..)))..))))))))))))..)))). | 1.000 -44.30 | ||||||||||
| rat | chromosome:13:81184388:81184481:-1 | intergenic ## {SimpF: oe = 0.75 -1 CpG} |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31039 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.