miR-Intess: classification

other hairpins

novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH (7 loci)

block1028580 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.42/0.44	18/19/0.00	0.0	0.0	61	0	6	0	10	21	5arm	1	nd	0.33	2	91	6	na	na

		reads	miRBase family seed
seed	-----------GGAGUGU----------------------------------------------------------------------------------	91	miR-122
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T4S1	T4S2
	----------TGGAGTGTGACAAACACA------------------------------------------------------------------------	18	1	1	61	12	-	8
	----------TGGAGTGTGACAAACACAT-----------------------------------------------------------------------	19	-	-	3	4	1	-
rat	caagggcttgTGGAGTGTGACAAACACAtactgtggagtgtgacaggcatatactatcactgccgtccacccactagtgttcattcacctcacaactctt
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000027760 ENSRNOG00000020451 Cd81
rat	.(((((.((((.(((.((((..(((((.....((((.(((.(((.((((...........))))))))))))))..)))))...))))))))))))))))	0.990 -36.30

rat

chromosome:1:203331907:203332006:1

block1150178 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.39/0.39	18/18/0.00	0.0	0.0	57	0	2	0	14	12	3arm	1	nd	0.39	2	57	2	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------AAGGCAU------------------------	57	novel
		len	cloning frequencies
			T4S1	T4S2
	------------------------------------------------------------------TAAGGCATAAAGAAGCAC--------------	18	22	35
rat	attaaacaggtactgtgccccttttacagtcagagggccattcagcgttttcaagctgaatggtatTAAGGCATAAAGAAGCACttccccgtgtagta
	**************************************************************************************************
	------------------------------------------------------------------------------------------------------------	ENSRNOT00000017276 ENSRNOG00000012186 Golph3
rat	((((.((.((....((((..((((....(((..((.((((((((((........)))))))))).))..)))..))))..))))...)).)).)))).	0.980 -30.90

rat

chromosome:2:61790654:61790751:-1

block2650973 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.37/0.39	18/21/0.01	0.0	0.0	55	0	10	0	11	13	3arm	1	nd	0.39	2	87	10	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------AGCUUAU---------------------	87	miR-21
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	---------------------------------------------------------------------TAGCTTATGTGACTGATG-----------	18	1	2	5	7	25	20	1	4	6	10
	---------------------------------------------------------------------TAGCTTATGTGACTGATGA----------	19	-	-	-	1	1	2	-	-	-	1
	---------------------------------------------------------------------TAGCTTATGTGACTGATGAAG--------	21	-	-	-	1	-	-	-	-	-	-
rat	tagccatttctataacaagaaacagaagaagacacagacagtgttggtatataaacccaacagaaggtcTAGCTTATGTGACTGATGaaggtggctac
	**************************************************************************************************
rat	(((((((((.(((....((..(((....(((....((((..((((((.........))))))....))))..))).)))..)).))).))))))))).	0.990 -25.10

rat

chromosome:9:111804410:111804507:1

intergenic

block2955704 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.28/0.33	18/21/0.04	0.0	0.0	78	0	5	0	22	18	3arm	1	nd	0.39	3	99	5	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------GUGAAAA--------------------------------	95	novel
seed	--------------------------------------------------------------------------------GGUGAAA---------------------------------	3	novel
seed	----------------------------------------------------------------------------------UGAAAAC-------------------------------	1	novel
		len	cloning frequencies
			T1S1	T2S1	T3S1	T4S1	T5S1
	--------------------------------------------------------------------------------GGTGAAAACCAGATTTTT----------------------	18	4	16	3	35	27
	--------------------------------------------------------------------------------GGTGAAAACCAGATTTTTT---------------------	19	-	3	-	2	1
	--------------------------------------------------------------------------------GGTGAAAACCAGATTTTTTTT-------------------	21	-	1	-	-	3
	-------------------------------------------------------------------------------TGGTGAAAACCAGATTTTT----------------------	19	-	1	-	1	1
	---------------------------------------------------------------------------------GTGAAAACCAGATTTTTT---------------------	18	-	-	-	-	1
rat	ttccattagctggtattagtcactgaattttttttgccatggctgattttgtaatttcttcagaagttgataaaggtaatGGTGAAAACCAGATTTTTtttaaaacctaagttaaggaaa
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000048336 ENSRNOG00000030877 Htr2c
rat	((((.(((((((((.((((.....((((((((((..((((.(((.......(((((((....))))))).....))).))))..))))..))))))...)))).)))..)))))))))).	1.000 -30.40

rat

chromosome:X:31072701:31072820:1

Opposite_strand|Intronic_coding|ENSRNOT00000048336|ENSRNOG00000030877 ## ENSRNOG00000030877|protein_coding|Htr2c|5-hydroxytryptamine receptor 2C (5-HT-2C) (Serotonin receptor 2C) (5- HT2C) (5-HTR2C) (5HT-1C). [Source:UniProtKB/Swiss-Prot;Acc:P08909] ## {Repeats: dust 31072794 31072801 0 class=dust}

novel_lenNOK_cloningHIGH_shortStem_bulgeHIGH (7 loci)

block77632 [novel_lenNOK_cloningHIGH_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.029	no	no	0.20/0.22	18/20/0.03	0.0	0.3	72	0	10	0	2	2	5arm	2	nd	0.26	4	80	10	na	na

		reads	miRBase family seed
seed	---AUUAUUU---------------------------------------------	80	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	--TATTATTTGAAAACCATG-----------------------------------	18	3	3	4	3	4	5	4	4	10	7
	--TATTATTTGAAAACCATGT----------------------------------	19	1	1	-	3	9	2	4	4	2	5
	--TATTATTTGAAAACCATGTT---------------------------------	20	-	-	-	-	-	-	-	2	-	-
rat	acTATTATTTGAAAACCATGTtcagactagagcagtctttcagaaattcaatagt
	*******************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000003983 ENSRNOG00000002886 Myh10
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000030500 ENSRNOG00000002886 Myh10
rat	((((((.(((((((....(((((......)))))...))))))).....))))))	0.990 -10.60

rat

chromosome:10:55483727:55483781:1

Same_strand|Intronic_coding|ENSRNOT00000030500|ENSRNOG00000002886 ## ENSRNOG00000002886|protein_coding|Myh10|Myosin-10 (Myosin heavy chain 10) (Myosin heavy chain, non-muscle IIb) (Non-muscle myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Non-muscle myosin heavy chain-B) (NMMHC- B). [Source:UniProtKB/Swiss-Prot;Acc:Q9JLT0]

block119311 [novel_lenNOK_cloningHIGH_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.122	no	no	0.44/0.50	18/20/0.60	0.0	0.4	39	0	9	0	2	1	3arm	1	nd	0.30	4	55	9	na	na

		reads	miRBase family seed
seed	-----------------------------------UCAGUGU--------------	53	novel
seed	------------------------------------CAGUGUU-------------	2	novel
		len	cloning frequencies
			T1S1	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	----------------------------------CTCAGTGTTCAGACTACCTG--	20	1	2	1	3	3	5	4	9	5
	----------------------------------CTCAGTGTTCAGACTACCT---	19	1	-	-	1	1	3	2	1	1
	----------------------------------CTCAGTGTTCAGACTACC----	18	-	1	-	-	2	-	4	3	-
	-----------------------------------TCAGTGTTCAGACTACCT---	18	-	-	-	1	-	1	-	-	-
rat	ttcaggcaaattgttgacatttactggcttggtgCTCAGTGTTCAGACTACCTGga
	********************************************************
rat	((((((.......((((....(((((((.....)).))))).))))....))))))	0.960 -13.90

rat

chromosome:11:35489806:35489861:-1

intergenic

block668488 [novel_lenNOK_cloningHIGH_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.295	no	no	0.16/0.22	18/20/0.06	0.1	0.0	45	0	9	0	2	20	3arm	1	nd	0.28	4	53	9	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------UGGAAUA-------------	44	novel
seed	----------------------------------------------------------------GGAAUAU------------	5	novel
seed	--------------------------------------------------------------UUGGAAU--------------	4	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T5S1	T5S2
	--------------------------------------------------------------TTGGAATATTTTTCTTAAG--	19	7	7	10	1	4	2	4	7	2
	---------------------------------------------------------------TGGAATATTTTTCTTAAG--	18	-	-	3	-	-	2	-	-	-
	-------------------------------------------------------------TTTGGAATATTTTTCTTAAG--	20	3	-	-	-	-	-	-	-	-
	-------------------------------------------------------------TTTGGAATATTTTTCTTAA---	19	-	-	-	-	-	-	1	-	-
rat	ttttatgcaggtatcttggtagttttgtatgtagttttctcaagcttttaggaaacttactTTTGGAATATTTTTCTTAAGac
	***********************************************************************************
rat	(((((...((((((((.(((((((((.((...(((((....)))))..)).)))))).)))...))).)))))....))))).	0.680 -12.80

rat

chromosome:17:62768301:62768383:1

intergenic

block709864 [novel_lenNOK_cloningHIGH_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.029	no	no	0.20/0.22	18/20/0.03	0.0	0.3	72	0	10	0	2	2	5arm	2	nd	0.26	4	80	10	na	na

		reads	miRBase family seed
seed	---AUUAUUU---------------------------------------------	80	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	--TATTATTTGAAAACCATG-----------------------------------	18	3	3	4	3	4	5	4	4	10	7
	--TATTATTTGAAAACCATGT----------------------------------	19	1	1	-	3	9	2	4	4	2	5
	--TATTATTTGAAAACCATGTT---------------------------------	20	-	-	-	-	-	-	-	2	-	-
rat	acTATTATTTGAAAACCATGTtcagactagagcagtctttcagaaattcaatagt
	*******************************************************
rat	((((((.(((((((....(((((......)))))...))))))).....))))))	0.990 -10.60

rat

chromosome:18:57565571:57565625:-1

intergenic

block2041405 [novel_lenNOK_cloningHIGH_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.723	no	no	0.47/0.50	18/19/0.00	0.0	0.0	54	0	2	0	0	7	5arm	1	nd	0.28	4	65	2	na	na

		reads	miRBase family seed
seed	-GGAAUGU------------------------------------------------	64	miR-1/206
seed	--GAAUGUA-----------------------------------------------	1	novel
		len	cloning frequencies
			T4S1	T4S2
	TGGAATGTAAAGGGGCGA--------------------------------------	18	26	28
	TGGAATGTAAAGGGGCGAA-------------------------------------	19	4	6
	-GGAATGTAAAGGGGCGAA-------------------------------------	18	-	1
rat	TGGAATGTAAAGGGGCGAatggcacacatcggtttattctaaatgtctgggttcca
	********************************************************
	------------------------------------------------------------------	ENSRNOT00000058922 ENSRNOG00000004794 Q64548-2
rat	.(((((.((....(((((((((.((......)))))))).....))))).))))).	0.560 -8.60

rat

chromosome:6:94458977:94459032:1

block2568971 [novel_lenNOK_cloningHIGH_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.925	no	no	0.61/0.65	18/20/0.04	0.0	0.0	49	0	2	0	4	4	3arm	2	nd	0.28	4	55	2	na	na

		reads	miRBase family seed
seed	----------------------------------------------GUGUCAC--------------	55	novel
		len	cloning frequencies
			T1S1	T1S2
	---------------------------------------------CGTGTCACTTGGCCAGAG----	18	25	24
	---------------------------------------------CGTGTCACTTGGCCAGAGC---	19	3	1
	---------------------------------------------CGTGTCACTTGGCCAGAGCC--	20	2	-
rat	ccgagcgcaccctgggagtcccgttttcacaccggacgagagtcaCGTGTCACTTGGCCAGAGccgg
	*******************************************************************
rat	(((.((.....((((.....(((.....((((..(((....)))..))))....))))))).)))))	0.540 -18.50