other hairpins
novel_lenNOK_cloningHIGH_shortStem_bulgeHIGH (7 loci)
block2568973 [novel_lenNOK_cloningHIGH_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.925 | no | no | 0.61/0.65 | 18/20/0.04 | 0.0 | 0.0 | 49 | 0 | 2 | 0 | 4 | 4 | 3arm | 2 | nd | 0.28 | 4 | 55 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------GUGUCAC-------------- | 55 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ---------------------------------------------CGTGTCACTTGGCCAGAG---- | 18 | 25 | 24 | |
| ---------------------------------------------CGTGTCACTTGGCCAGAGC--- | 19 | 3 | 1 | |
| ---------------------------------------------CGTGTCACTTGGCCAGAGCC-- | 20 | 2 | - | |
| rat | ccgagcgcaccctgggagtcccgttttcacaccggacgagagtcaCGTGTCACTTGGCCAGAGccgg | |||
| ******************************************************************* | ||||
| rat | (((.((.....((((.....(((.....((((..(((....)))..))))....))))))).))))) | 0.540 -18.50 | ||
| rat | chromosome:9:11289815:11289881:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH (7 loci)
sblock10379 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.213 | no | no | 0.32/0.57 | 19/24/0.64 | 1.5 3.0 | 1.7 5.4 | 6 5 | 0 0 | 2 2 | 0 0 | 0 0 | 17 17 | 5arm 3arm | 1 1 | nd nd | 0.35 0.29 | 3 2 | 11 | 3 | -7 | -2 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------GACAGAU--------------------- | 3 | novel | ||
| seed | --CACUAAA----------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -UCACUAA------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | ------------------------------------------------------------------------------GGAGCUG------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------GGGAGCU-------------- | 1 | novel | ||
| seed | ------AAACAUU------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---ACUAAAC---------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| GTCACTAAACATTTCTCTGA------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| -TCACTAAACATTTCTCTGA------------------------------------------------------------------------------ | 19 | - | 1 | 1 | |
| ---------------------------------------------------------------------TGACAGATGGGAGCTGTGTGT-------- | 21 | - | - | 1 | |
| -----------------------------------------------------------------------------GGGAGCTGTGTGTGTGGAAGT | 21 | 1 | - | - | |
| ---------------------------------------------------------------------TGACAGATGGGAGCTGTGT---------- | 19 | - | - | 1 | |
| -----TAAACATTTCTCTGAATTTGCCTC--------------------------------------------------------------------- | 24 | - | - | 1 | |
| ---------------------------------------------------------------------TGACAGATGGGAGCTGTGTGTGTG----- | 24 | - | - | 1 | |
| ----------------------------------------------------------------------------TGGGAGCTGTGTGTGTGGAAGT | 22 | - | - | 1 | |
| --CACTAAACATTTCTCTGAA----------------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | GTCACTAAACATTTCTCTGAATTTGCCTCcctgtttggtaactgcaaacaagtgtggttgtcttgcttcTGACAGATGGGAGCTGTGTGTGTGGAAGT | ||||
| ************************************************************************************************** | |||||
| rat | .((((...((((..((((..(((((.......((..((((((..((......))..))))))..))......))))).))))..))))..)))).... | 0.930 -24.42 | |||
| rat | chromosome:6:122587309:122587406:1 | intergenic |
sblock4050 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.770 | no | no | 0.42/0.67 | 18/24/0.38 | 2.0 0.0 0.0 0.0 0.0 | 1.4 0.0 0.0 0.0 0.0 | 8 2 1 1 1 | 0 0 0 0 0 | 5 1 1 1 1 | 0 0 0 0 0 | 1 33 46 31 24 | 24 0 -14 -1 4 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 9 55 55 130 130 | nd nd nd nd nd | 0.27 0.44 0.42 0.22 0.20 | 2 4 5 2 2 | 13 | 7 | -1 | 0 |
| reads | miRBase family seed | ||||||||
| seed | ----CCUGUUC--------------------------------------------------------------------------------------------- | 3 | novel | ||||||
| seed | ----------------------------------GCAGUGC--------------------------------------------------------------- | 2 | novel | ||||||
| seed | --UCCCUGU----------------------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | ------UGUUCUA------------------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | --------------------------------------------------------GACAAGA----------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------GAUGGUG------------------------------------ | 1 | novel | ||||||
| seed | -----------------------------------------------CGUCUCA-------------------------------------------------- | 1 | novel | ||||||
| seed | --------UUCUAGA----------------------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------TGCAGTGCCAGCCTCGTC----------------------------------------------------- | 18 | - | - | - | - | 2 | - | - | |
| -----CTGTTCTAGAGACAGCCGC-------------------------------------------------------------------------------- | 19 | - | - | 2 | - | - | - | - | |
| ---CCCTGTTCTAGAGACAGCCGC-------------------------------------------------------------------------------- | 21 | - | - | - | 1 | - | - | - | |
| -CTCCCTGTTCTAGAGACAG------------------------------------------------------------------------------------ | 19 | - | - | - | 1 | - | - | - | |
| ---CCCTGTTCTAGAGACAGCC---------------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | |
| -CTCCCTGTTCTAGAGACAGCCGCA------------------------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------TCGTCTCATAGACAAGATG--------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| -------GTTCTAGAGACAGCCGCATC----------------------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------AGATGGTGAAGGTCGGTGTG------------------------ | 20 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------AGACAAGATGGTGAAGGT------------------------------- | 18 | 1 | - | - | - | - | - | - | |
| ---CCCTGTTCTAGAGACAGCCGCA------------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | |
| rat | gCTCCCTGTTCTAGAGACAGCCGCATCtccttgTGCAGTGCCAGCCTCGTCTCATAGACAAGATGGTGAAGGTCGGTGTGaatggatttggccgtattgggcgc | ||||||||
| ******************************************************************************************************** | |||||||||
| ................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000051863 ENSRNOG00000031702 LOC297809 | ||||||||
| rat | ((.(((.((.(((((..((..((((((.((((......(((((..((.(((.....))).)).)))))))))..))))))..))..)))))....)).))).)) | 0.620 -30.60 | |||||||
| rat | chromosome:14:43416337:43416440:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000051863|ENSRNOG00000031702 ## intergenic ## ENSRNOG00000031702|pseudogene|LOC297809| |
sblock4902 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.838 | no | no | 0.42/0.67 | 18/24/0.50 | 3.8 0.0 1.0 0.0 0.0 0.0 0.0 0.0 | 2.9 0.0 1.0 0.0 0.0 0.0 0.0 0.0 | 11 1 2 1 2 1 1 1 | 0 0 0 0 0 0 0 0 | 5 1 2 1 1 1 1 1 | 0 0 0 0 0 0 0 0 | 0 18 22 28 37 50 19 12 | 24 19 11 5 0 -14 -1 4 | 5arm 5arm 5arm 5arm 5arm 5arm_loop_3arm 3arm 3arm | 9 18 18 25 55 55 130 130 | nd nd nd nd nd nd nd nd | 0.35 0.33 0.50 0.50 0.50 0.42 0.11 0.05 | 5 3 9 9 5 5 1 1 | 20 | 8 | 0 | 0 |
| reads | miRBase family seed | |||||||||
| seed | --------CCUGUUC--------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | ----------UGUUCUA------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | --------------------------------------GCAGUGC--------------------------------------------------- | 2 | novel | |||||||
| seed | ------UCCCUGU----------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -GCUCCUC---------------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ---------------------------------------------------CGUCUCA-------------------------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------------GACAAGA----------------------------- | 1 | novel | |||||||
| seed | -----------------------GCCGCAU------------------------------------------------------------------ | 1 | novel | |||||||
| seed | --CUCCUCC--------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------UCUUCUU------------------------------------------------------------ | 1 | novel | |||||||
| seed | -----------------------------------------------------------------GAUGGUG------------------------ | 1 | novel | |||||||
| seed | -------------------GACAGCC---------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ------------UUCUAGA----------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------CGCAUCU---------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------CTGTTCTAGAGACAGCCGC-------------------------------------------------------------------- | 19 | - | - | 2 | - | - | - | - | - | |
| -------------------------------------TGCAGTGCCAGCCTCGTC----------------------------------------- | 18 | - | - | - | - | - | 2 | - | - | |
| ----------------------------ATCTTCTTGTGCAGTGCCAGCC---------------------------------------------- | 22 | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------AGACAAGATGGTGAAGGT------------------- | 18 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------AGATGGTGAAGGTCGGTGTG------------ | 20 | - | - | - | - | - | - | - | 1 | |
| -----------GTTCTAGAGACAGCCGCATC----------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | |
| -------CCCTGTTCTAGAGACAGCCGC-------------------------------------------------------------------- | 21 | - | - | - | 1 | - | - | - | - | |
| -----CTCCCTGTTCTAGAGACAG------------------------------------------------------------------------ | 19 | - | - | - | 1 | - | - | - | - | |
| --------------------------------------------------TCGTCTCATAGACAAGATG--------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------AGACAGCCGCATCTTCTT------------------------------------------------------------ | 18 | 1 | - | - | - | - | - | - | - | |
| -GCTCCTCCCTGTTCTAGAGAC-------------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| TGCTCCTCCCTGTTCTAGAGA--------------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| ----------------------AGCCGCATCTTCTTGTGCAGTG---------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | |
| -----CTCCCTGTTCTAGAGACAGCCGCA------------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | - | |
| TGCTCCTCCCTGTTCTAGAG---------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| -------CCCTGTTCTAGAGACAGCC---------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | - | |
| -------CCCTGTTCTAGAGACAGCCGCA------------------------------------------------------------------- | 22 | - | - | - | - | - | 1 | - | - | |
| ------------------------CCGCATCTTCTTGTGCAG------------------------------------------------------ | 18 | 1 | - | - | - | - | - | - | - | |
| rat | TGCTCCTCCCTGTTCTAGAGACAGCCGCATCTTCTTGTGCAGTGCCAGCCTCGTCTCATAGACAAGATGGTGAAGGTCGGTGTGaacggatttggc | |||||||||
| ************************************************************************************************ | ||||||||||
| .......................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047750 ENSRNOG00000033057 RGD1565735_predicted | |||||||||
| rat | .(((.....((((((.....(((.(((.((((((.........((((..((.(((.....))).)).))))))))))))))))))))))....))) | 0.570 -24.60 | ||||||||
| rat | chromosome:16:25751128:25751223:1 | Same_strand|Boundary_non-coding|ENSRNOT00000047750|ENSRNOG00000033057 ## intergenic ## ENSRNOG00000033057|protein_coding|RGD1565735_predicted|Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH) (38 kDa BFA-dependent ADP-ribosylation substrate) (BARS-38). [Source:UniProtKB/Swiss-Prot;Acc:P04797] ## {Repeats: trf 1 17 0 class=trf} |
sblock6074 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.352 | no | no | 0.37/0.53 | 18/25/0.14 | 1.5 0.0 | 3.0 0.0 | 13 1 | 0 0 | 5 1 | 0 0 | 1 20 | 18 4 | 5arm 3arm | 2 2 | nd nd | 0.11 0.26 | 1 3 | 14 | 6 | -6 | -12 |
| reads | miRBase family seed | |||||||
| seed | --GAGAGAC---------------------------------------------------------------------------------- | 5 | novel | |||||
| seed | ---AGAGACU--------------------------------------------------------------------------------- | 5 | novel | |||||
| seed | -------ACUUGCC----------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------GACUUGC------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | --------CUUGCCA---------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------CCACCAA------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| --GAGAGACTTGCCAAAGAG----------------------------------------------------------------------- | 18 | - | 1 | - | 1 | - | 1 | |
| -TGAGAGACTTGCCAAAGAG----------------------------------------------------------------------- | 19 | - | 1 | - | - | 2 | - | |
| --GAGAGACTTGCCAAAGAGTTGTTT----------------------------------------------------------------- | 24 | 1 | - | - | - | 1 | - | |
| -TGAGAGACTTGCCAAAGAGTTGTTT----------------------------------------------------------------- | 25 | 1 | - | - | - | 1 | - | |
| -------ACTTGCCAAAGAGTTGTTT----------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ----------------------------------------------------CCCACCAAGCTGCTCTTTA-------------------- | 19 | - | - | 1 | - | - | - | |
| ------GACTTGCCAAAGAGTTGTT------------------------------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| -----AGACTTGCCAAAGAGTTGT------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| rat | gTGAGAGACTTGCCAAAGAGTTGTTTattggtactggtggagtttgataattCCCACCAAGCTGCTCTTTActtggtgctggttgggttat | |||||||
| ******************************************************************************************* | ||||||||
| rat | ((((..((((.((((((((((.(((.........((((((((((....)))))).))))))).))))))....))))...))))...)))) | 0.940 -22.00 | ||||||
| rat | chromosome:2:105722403:105722493:-1 | intergenic |
sblock9331 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.838 | no | no | 0.42/0.67 | 18/24/0.50 | 3.8 0.0 1.0 0.0 0.0 0.0 0.0 0.0 | 2.9 0.0 1.0 0.0 0.0 0.0 0.0 0.0 | 11 1 2 1 2 1 1 1 | 0 0 0 0 0 0 0 0 | 5 1 2 1 1 1 1 1 | 0 0 0 0 0 0 0 0 | 0 18 22 28 37 50 19 12 | 24 19 11 5 0 -14 -1 4 | 5arm 5arm 5arm 5arm 5arm 5arm_loop_3arm 3arm 3arm | 9 18 18 25 55 55 130 130 | nd nd nd nd nd nd nd nd | 0.35 0.33 0.50 0.50 0.50 0.42 0.11 0.05 | 5 3 9 9 5 5 1 1 | 20 | 8 | 0 | 0 |
| reads | miRBase family seed | |||||||||
| seed | --------CCUGUUC--------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | ----------UGUUCUA------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | --------------------------------------GCAGUGC--------------------------------------------------- | 2 | novel | |||||||
| seed | ------UCCCUGU----------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -GCUCCUC---------------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ---------------------------------------------------CGUCUCA-------------------------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------------GACAAGA----------------------------- | 1 | novel | |||||||
| seed | -----------------------GCCGCAU------------------------------------------------------------------ | 1 | novel | |||||||
| seed | --CUCCUCC--------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------UCUUCUU------------------------------------------------------------ | 1 | novel | |||||||
| seed | -----------------------------------------------------------------GAUGGUG------------------------ | 1 | novel | |||||||
| seed | -------------------GACAGCC---------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ------------UUCUAGA----------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------CGCAUCU---------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------CTGTTCTAGAGACAGCCGC-------------------------------------------------------------------- | 19 | - | - | 2 | - | - | - | - | - | |
| -------------------------------------TGCAGTGCCAGCCTCGTC----------------------------------------- | 18 | - | - | - | - | - | 2 | - | - | |
| ----------------------------ATCTTCTTGTGCAGTGCCAGCC---------------------------------------------- | 22 | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------AGACAAGATGGTGAAGGT------------------- | 18 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------AGATGGTGAAGGTCGGTGTG------------ | 20 | - | - | - | - | - | - | - | 1 | |
| -----------GTTCTAGAGACAGCCGCATC----------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | |
| -------CCCTGTTCTAGAGACAGCCGC-------------------------------------------------------------------- | 21 | - | - | - | 1 | - | - | - | - | |
| -----CTCCCTGTTCTAGAGACAG------------------------------------------------------------------------ | 19 | - | - | - | 1 | - | - | - | - | |
| --------------------------------------------------TCGTCTCATAGACAAGATG--------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------AGACAGCCGCATCTTCTT------------------------------------------------------------ | 18 | 1 | - | - | - | - | - | - | - | |
| TGCTCCTCCCTGTTCTAGAGA--------------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| -GCTCCTCCCTGTTCTAGAGAC-------------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| ----------------------AGCCGCATCTTCTTGTGCAGTG---------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | |
| -----CTCCCTGTTCTAGAGACAGCCGCA------------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | - | |
| TGCTCCTCCCTGTTCTAGAG---------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| -------CCCTGTTCTAGAGACAGCC---------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | - | |
| -------CCCTGTTCTAGAGACAGCCGCA------------------------------------------------------------------- | 22 | - | - | - | - | - | 1 | - | - | |
| ------------------------CCGCATCTTCTTGTGCAG------------------------------------------------------ | 18 | 1 | - | - | - | - | - | - | - | |
| rat | TGCTCCTCCCTGTTCTAGAGACAGCCGCATCTTCTTGTGCAGTGCCAGCCTCGTCTCATAGACAAGATGGTGAAGGTCGGTGTGaacggatttggc | |||||||||
| ************************************************************************************************ | ||||||||||
| .......................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000041328 ENSRNOG00000030963 RGD1562898_predicted | |||||||||
| rat | .(((.....((((((.....(((.(((.((((((.........((((..((.(((.....))).)).))))))))))))))))))))))....))) | 0.570 -24.60 | ||||||||
| rat | chromosome:5:73007215:73007310:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000041328|ENSRNOG00000030963 ## intergenic ## ENSRNOG00000030963|pseudogene|RGD1562898_predicted| |
sblock9773 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.838 | no | no | 0.42/0.67 | 18/24/0.50 | 3.8 0.0 1.0 0.0 0.0 0.0 0.0 0.0 | 2.9 0.0 1.0 0.0 0.0 0.0 0.0 0.0 | 11 1 2 1 2 1 1 1 | 0 0 0 0 0 0 0 0 | 5 1 2 1 1 1 1 1 | 0 0 0 0 0 0 0 0 | 0 18 22 28 37 50 19 12 | 24 19 11 5 0 -14 -1 4 | 5arm 5arm 5arm 5arm 5arm 5arm_loop_3arm 3arm 3arm | 9 18 18 25 55 55 130 130 | nd nd nd nd nd nd nd nd | 0.35 0.33 0.50 0.50 0.50 0.42 0.11 0.05 | 5 3 9 9 5 5 1 1 | 20 | 8 | 0 | 0 |
| reads | miRBase family seed | |||||||||
| seed | --------CCUGUUC--------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | ----------UGUUCUA------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | --------------------------------------GCAGUGC--------------------------------------------------- | 2 | novel | |||||||
| seed | ------UCCCUGU----------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -GCUCCUC---------------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ---------------------------------------------------CGUCUCA-------------------------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------------GACAAGA----------------------------- | 1 | novel | |||||||
| seed | -----------------------GCCGCAU------------------------------------------------------------------ | 1 | novel | |||||||
| seed | --CUCCUCC--------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------UCUUCUU------------------------------------------------------------ | 1 | novel | |||||||
| seed | -----------------------------------------------------------------GAUGGUG------------------------ | 1 | novel | |||||||
| seed | -------------------GACAGCC---------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ------------UUCUAGA----------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------CGCAUCU---------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------CTGTTCTAGAGACAGCCGC-------------------------------------------------------------------- | 19 | - | - | 2 | - | - | - | - | - | |
| -------------------------------------TGCAGTGCCAGCCTCGTC----------------------------------------- | 18 | - | - | - | - | - | 2 | - | - | |
| ----------------------------ATCTTCTTGTGCAGTGCCAGCC---------------------------------------------- | 22 | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------AGACAAGATGGTGAAGGT------------------- | 18 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------AGATGGTGAAGGTCGGTGTG------------ | 20 | - | - | - | - | - | - | - | 1 | |
| -----------GTTCTAGAGACAGCCGCATC----------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | |
| -------CCCTGTTCTAGAGACAGCCGC-------------------------------------------------------------------- | 21 | - | - | - | 1 | - | - | - | - | |
| -----CTCCCTGTTCTAGAGACAG------------------------------------------------------------------------ | 19 | - | - | - | 1 | - | - | - | - | |
| --------------------------------------------------TCGTCTCATAGACAAGATG--------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------AGACAGCCGCATCTTCTT------------------------------------------------------------ | 18 | 1 | - | - | - | - | - | - | - | |
| -GCTCCTCCCTGTTCTAGAGAC-------------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| TGCTCCTCCCTGTTCTAGAGA--------------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| ----------------------AGCCGCATCTTCTTGTGCAGTG---------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | |
| -----CTCCCTGTTCTAGAGACAGCCGCA------------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | - | |
| TGCTCCTCCCTGTTCTAGAG---------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| -------CCCTGTTCTAGAGACAGCC---------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | - | |
| -------CCCTGTTCTAGAGACAGCCGCA------------------------------------------------------------------- | 22 | - | - | - | - | - | 1 | - | - | |
| ------------------------CCGCATCTTCTTGTGCAG------------------------------------------------------ | 18 | 1 | - | - | - | - | - | - | - | |
| rat | TGCTCCTCCCTGTTCTAGAGACAGCCGCATCTTCTTGTGCAGTGCCAGCCTCGTCTCATAGACAAGATGGTGAAGGTCGGTGTGaacggatttggc | |||||||||
| ************************************************************************************************ | ||||||||||
| .......................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000058004 ENSRNOG00000038118 Q8K4T8_RAT | |||||||||
| rat | .(((.....((((((.....(((.(((.((((((.........((((..((.(((.....))).)).))))))))))))))))))))))....))) | 0.570 -24.60 | ||||||||
| rat | chromosome:5:117080209:117080304:1 | Same_strand|Boundary_non-coding|ENSRNOT00000058004|ENSRNOG00000038118 ## intergenic ## ENSRNOG00000038118|protein_coding|Q8K4T8_RAT|Glyceraldehyde-3-phosphate-dehydrogenase (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q8K4T8] |
sblock8009 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.192 | no | no | 0.35/0.55 | 18/25/0.61 | 2.9 0.0 0.0 0.0 | 3.3 0.0 0.0 0.0 | 11 2 2 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 0 13 30 13 | 14 4 -10 11 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 5 | nd nd nd nd | 0.15 0.56 0.59 0.50 | 1 5 7 7 | 18 | 2 | -1 | -5 |
| reads | miRBase family seed | |||
| seed | -----UCCUGAC------------------------------------------------------------------------------- | 5 | miR-378* | |
| seed | ---------GACAUAG--------------------------------------------------------------------------- | 5 | novel | |
| seed | --------------AGAAAGC---------------------------------------------------------------------- | 2 | novel | |
| seed | -CCUGUCC----------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------GGAGACC----------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------UCCUUUC----------------------- | 1 | novel | |
| seed | -------CUGACAU----------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------TGACATAGAAAGCATATGGT--------------------------------------------------------------- | 20 | - | 5 | |
| ----GTCCTGACATAGAAAGCAT-------------------------------------------------------------------- | 19 | - | 4 | |
| ------------------------------TGGAGACCAGAGACTTCCCCTT--------------------------------------- | 22 | - | 2 | |
| TCCTGTCCTGACATAGAAAG----------------------------------------------------------------------- | 20 | - | 2 | |
| -------------TAGAAAGCATATGGTAATGGAGACC----------------------------------------------------- | 25 | - | 2 | |
| ------CCTGACATAGAAAGCATATG----------------------------------------------------------------- | 20 | - | 1 | |
| ------------------------------------------------------------TTCCTTTCCTCCTCTCTA------------- | 18 | 1 | - | |
| ----GTCCTGACATAGAAAGCATATGG---------------------------------------------------------------- | 23 | - | 1 | |
| rat | TCCTGTCCTGACATAGAAAGCATATGGTAATGGAGACCAGAGACTTCCCCTTaatccagcttcctttcctcctctctatgctcggagatgg | |||
| ******************************************************************************************* | ||||
| rat | ..(((((((((((((((.((.....((...((((.....(((.......)))..))))....)).......)).)))))).)))).))))) | 0.970 -20.60 | ||
| rat | chromosome:3:76955145:76955235:1 | intergenic |
novel_lenNOK_cloningOK_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (7 loci)
block367191 [novel_lenNOK_cloningOK_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.50/0.53 | 18/19/0.00 | 0.0 | 0.0 | 10 | 0 | 4 | 0 | 4 | -3 | 5arm_loop_3arm | 1 | nd | 0.44 | 4 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----CCCUCAG-------------------------------- | 11 | miR-760 | |||
| len | cloning frequencies | |||||
| T2S2 | T3S2 | T4S2 | T5S2 | |||
| ----TCCCTCAGGATAGCAGAA---------------------- | 18 | 4 | 4 | 2 | - | |
| ----TCCCTCAGGATAGCAGAAC--------------------- | 19 | - | - | - | 1 | |
| rat | tccaTCCCTCAGGATAGCAGAActgctccttgagcatctaggaa | |||||
| ******************************************** | ||||||
| ------------------------------------------------------ | ENSRNOT00000008355 ENSRNOG00000005218 NP_001100705.1 | |||||
| ------------------------------------------------------ | ENSRNOT00000007056 ENSRNOG00000005218 NP_001100705.1 | |||||
| rat | (((....((((((..((((....)))).))))))......))). | 0.960 -12.00 | ||||
| rat | chromosome:14:84791327:84791370:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000007056|ENSRNOG00000005218 ## ENSRNOG00000005218|protein_coding|NP_001100705.1|splicing factor 3a, subunit 1 [Source:RefSeq_peptide;Acc:NP_001100705] |
block442925 [novel_lenNOK_cloningOK_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.137 | no | no | 0.58/0.61 | 18/19/0.00 | 0.0 | 0.0 | 13 | 0 | 9 | 0 | 2 | -4 | 5arm_loop | 1 | nd | 0.44 | 5 | 18 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ---GGCAAGA------------------------------- | 18 | miR-31 | ||||||||
| len | cloning frequencies | ||||||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --TGGCAAGAGGAAAGGGGC--------------------- | 18 | 1 | - | 3 | 1 | 1 | 2 | 1 | 4 | 4 | |
| --TGGCAAGAGGAAAGGGGCT-------------------- | 19 | - | 1 | - | - | - | - | - | - | - | |
| rat | gaTGGCAAGAGGAAAGGGGCttcacttcctacctgctaatc | ||||||||||
| ***************************************** | |||||||||||
| rat | ..(((((..(((.(((........))))))...)))))... | 1.000 -10.40 | |||||||||
| rat | chromosome:15:36936645:36936685:-1 | intergenic |
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