other hairpins
novel_lenNOK_gcHIGH_bulgeHIGH (7 loci)
block2126267 [novel_lenNOK_gcHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.469 | no | no | 0.95/0.95 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 18 | 8 | 5arm | 1 | nd | 0.21 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------GGCGCCG---------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| ------------------CGGCGCCGCTCGGGGCGGG----------------------------------------------- | 19 | 1 | |
| rat | cgcccgcccacccgtgtcCGGCGCCGCTCGGGGCGGGgggctagcgaggcagaaccccagccgcggcgccgggaagaggccgcg | ||
| ************************************************************************************ | |||
| rat | (((..(((........(((((((((((....(((((((..((.((...))))..)))).))))))))))))))....))).))) | 0.910 -46.10 |
| rat | chromosome:7:72129108:72129191:-1 | intergenic ## {SimpF: oe = 0.95 -1 CpG} |
block2215317 [novel_lenNOK_gcHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.480 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 26 | 0 | 3arm | 1 | nd | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------GGGCCCG------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------CGGGCCCGGCCCGCAGCC-------------------------- | 18 | 1 | |
| rat | aggaacttcaagcgcgtggggccggggaggaggaaagggctgagccaatgggaggaCGGGCCCGGCCCGCAGCCccgcagcccctcagtccctctgtcct | ||
| **************************************************************************************************** | |||
| rat | ((((.......((....((((((((((.........((((((.(((..((......))))).))))))....)))))..)))))...)).......)))) | 0.820 -40.46 |
| rat | chromosome:7:57229552:57229651:1 | intergenic ## {Repeats: trf 19 27 0 class=trf} |
novel_lenNOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH (7 loci)
block1723275 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.42/0.47 | 19/24/0.17 | 2.7 0.0 | 1.0 0.0 | 3 3 | 0 0 | 2 1 | 0 0 | 14 26 | -2 -6 | 5arm 5arm_loop_3arm | 2 5 | nd nd | 0.37 0.26 | 3 4 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------CCUCCAG------------------------------------------------ | 3 | novel | |
| seed | -----------------------ACAUCCU---------------------------------------------------- | 2 | novel | |
| seed | ---------------UCAAGUC------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| --------------------------TCCTCCAGGAAATTCCTGT------------------------------------- | 19 | 3 | - | |
| ----------------------TACATCCTCCAGGAAATTC----------------------------------------- | 19 | 2 | - | |
| --------------TTCAAGTCTACATCCTCCAGGAAA-------------------------------------------- | 24 | - | 1 | |
| rat | cctggaagacacagTTCAAGTCTACATCCTCCAGGAAATTCCTGTttccatgcccaggactcactcactgcatattctccag | |||
| ********************************************************************************** | ||||
| -------------------------------------------------------------------------------------------- | ENSRNOT00000047859 ENSRNOG00000024953 LOC678820 | |||
| -------------------------------------------------------------------------------------------- | ENSRNOT00000042810 ENSRNOG00000024953 LOC678820 | |||
| -------------------------------------------------------------------------------------------- | ENSRNOT00000029502 ENSRNOG00000024953 LOC678820 | |||
| -------------------------------------------------------------------------------------------- | ENSRNOT00000046389 ENSRNOG00000024953 LOC678820 | |||
| -------------------------------------------------------------------------------------------- | ENSRNOT00000029529 ENSRNOG00000024953 LOC678820 | |||
| -------------------------------------------------------------------------------------------- | ENSRNOT00000051311 ENSRNOG00000024953 LOC678820 | |||
| -------------------------------------------------------------------------------------------- | ENSRNOT00000037210 ENSRNOG00000024953 LOC678820 | |||
| rat | .((((.(((..((((...(((.....((((.((((((((....)))))).))...))))...))).)))).....))))))) | 0.770 -17.30 | ||
| rat | chromosome:5:25526370:25526451:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000037210|ENSRNOG00000024953 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000041129|ENSRNOG00000024953 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000047859|ENSRNOG00000024953 ## ENSRNOG00000024953|protein_coding|LOC678820| |
block1821035 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.42/0.47 | 19/24/0.17 | 2.7 0.0 | 1.0 0.0 | 3 3 | 0 0 | 2 1 | 0 0 | 14 26 | -2 -6 | 5arm 5arm_loop_3arm | 2 5 | nd nd | 0.37 0.26 | 3 4 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------CCUCCAG------------------------------------------------ | 3 | novel | |
| seed | -----------------------ACAUCCU---------------------------------------------------- | 2 | novel | |
| seed | ---------------UCAAGUC------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| --------------------------TCCTCCAGGAAATTCCTGT------------------------------------- | 19 | 3 | - | |
| ----------------------TACATCCTCCAGGAAATTC----------------------------------------- | 19 | 2 | - | |
| --------------TTCAAGTCTACATCCTCCAGGAAA-------------------------------------------- | 24 | - | 1 | |
| rat | cctggaagacacagTTCAAGTCTACATCCTCCAGGAAATTCCTGTttccatgcccaggactcactcactgcatattctccag | |||
| ********************************************************************************** | ||||
| rat | .((((.(((..((((...(((.....((((.((((((((....)))))).))...))))...))).)))).....))))))) | 0.770 -17.30 | ||
| rat | chromosome:5:25628931:25629012:1 | intergenic |
block203889 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.054 | no | no | 0.45/0.63 | 19/24/0.67 | 0.0 2.0 | 1.0 4.0 | 3 3 | 0 0 | 1 2 | 0 0 | 12 19 | 4 -7 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.27 0.35 | 4 4 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------GUGUUCU---------------------------------------------------------- | 3 | novel | |
| seed | --------------------GAGGCUC--------------------------------------------------- | 2 | novel | |
| seed | --------------------------CCCAAGG--------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------TGTGTTCTGAGGCTCCCAAGGG-------------------------------------------- | 22 | - | 2 | |
| -------------------TGAGGCTCCCAAGGGTGTG---------------------------------------- | 19 | - | 1 | |
| ------------TGTGTTCTGAGGCTCCCAA----------------------------------------------- | 19 | - | 1 | |
| -------------------------TCCCAAGGGTGTGAAATCAA--------------------------------- | 20 | 1 | - | |
| -------------------TGAGGCTCCCAAGGGTGTGAAATC----------------------------------- | 24 | - | 1 | |
| rat | gagcagtagcccTGTGTTCTGAGGCTCCCAAGGGTGTGAAATCAAgctctagggagagaggcagtttggtcccagctc | |||
| ****************************************************************************** | ||||
| rat | ((((....(((((((.((((....(((((.(((((.((....)).))))).)))))))))))))...)))....)))) | 0.970 -27.00 | ||
| rat | chromosome:12:44288531:44288608:-1 | intergenic |
block1825049 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.117 | no | no | 0.55/0.67 | 18/23/0.50 | 0.7 3.2 | 0.3 5.2 | 3 5 | 0 0 | 1 4 | 0 0 | 7 16 | 3 -11 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.26 0.28 | 4 3 | 8 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------UGCAUAA--------------------------------------------------- | 3 | novel | |||
| seed | --------AGAGCUU------------------------------------------------------------ | 2 | novel | |||
| seed | ----------AGCUUCC---------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------CCCCAGG-------------------------------------------- | 1 | novel | |||
| seed | --------------------------CCAGGGA------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S2 | T4S2 | |||
| -------CAGAGCTTCCTGCATAACCCCA---------------------------------------------- | 22 | 2 | - | - | - | |
| -------------------------CCCAGGGAAGAACCTCCG-------------------------------- | 18 | - | - | 1 | - | |
| ----------------CTGCATAACCCCAGGGAA----------------------------------------- | 18 | 1 | - | - | - | |
| -----------------------ACCCCAGGGAAGAACCTCC--------------------------------- | 19 | - | - | - | 1 | |
| ----------------CTGCATAACCCCAGGGAAGAAC------------------------------------- | 22 | - | 1 | - | - | |
| ----------------CTGCATAACCCCAGGGAAGAACC------------------------------------ | 23 | - | 1 | - | - | |
| ---------GAGCTTCCTGCATAACCCC----------------------------------------------- | 19 | 1 | - | - | - | |
| rat | gcatctgCAGAGCTTCCTGCATAACCCCAGGGAAGAACCTCCGggcacgtctgtgctttagttcagcacgtcgca | |||||
| *************************************************************************** | ||||||
| rat | ((((.(((.(((((....((((((((((.(((......))).)))...)).)))))...))))).))).)).)). | 0.740 -23.00 | ||||
| rat | chromosome:5:34326303:34326377:1 | intergenic |
sblock10688 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.115 | no | no | 0.44/0.60 | 18/23/0.50 | 0.0 2.0 0.0 | 0.0 1.5 0.0 | 1 6 1 | 0 0 0 | 1 3 1 | 0 0 0 | 25 38 19 | 15 -2 15 | 5arm 5arm_loop 3arm | 3 3 9 | nd nd nd | 0.50 0.42 0.22 | 6 4 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------CCCGUAG------------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------------------------------UCCCGUA-------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------GCCAUCC--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------CGUAGUA----------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------AGUAUCA-------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------GCCAUUU----------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| -----------------------------------------------------------------------------------TGCCATTTCAGTGAGGGG------------------- | 18 | - | - | 1 | |
| ---------------------------------------TCCCGTAGTATCAGTTCTGGAG----------------------------------------------------------- | 22 | - | - | 1 | |
| ---------------------------------------TCCCGTAGTATCAGTTCT--------------------------------------------------------------- | 18 | - | - | 1 | |
| --------------------------------------TTCCCGTAGTATCAGTTCTGGAG----------------------------------------------------------- | 23 | - | - | 1 | |
| ---------------------------------------TCCCGTAGTATCAGTTCTG-------------------------------------------------------------- | 19 | - | 1 | - | |
| --------------------------------------------TAGTATCAGTTCTGGAGC---------------------------------------------------------- | 18 | - | - | 1 | |
| -------------------------TGCCATCCTGTGGTTCCCGT--------------------------------------------------------------------------- | 20 | - | - | 1 | |
| -----------------------------------------CCGTAGTATCAGTTCTGGAGC---------------------------------------------------------- | 21 | 1 | - | - | |
| rat | tccacactctacccttctgcctcctTGCCATCCTGTGGTTCCCGTAGTATCAGTTCTGGAGCataaaatccttggtcctctgcTGCCATTTCAGTGAGGGGcagtgtctgcggtgatggg | ||||
| ************************************************************************************************************************ | |||||
| rat | .(((((((........(((((.((((((......(((((....((((.(((((....(((........))))))))...)))).)))))....))))))))))).......)))).))). | 0.700 -35.56 | |||
| rat | chromosome:7:18798365:18798484:-1 | intergenic |
sblock7167 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.623 | no | no | 0.47/0.60 | 18/25/0.17 | 2.7 1.0 | 0.7 1.0 | 3 3 | 0 0 | 2 1 | 0 0 | 14 8 | -6 0 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.36 0.28 | 4 4 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------CCGGAAU------------------------- | 2 | novel | |
| seed | ----------------------AGAUGCC----------------------------------------- | 1 | novel | |
| seed | -----------------------------------------GAAUGCU---------------------- | 1 | novel | |
| seed | ---------------CGGGUCU------------------------------------------------ | 1 | novel | |
| seed | ----------------GGGUCUA----------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------------------------TCCGGAATGCTTTGGCTTGTACACA-------- | 25 | - | 2 | |
| ---------------CGGGTCTAGATGCCAGGAGTTG--------------------------------- | 22 | - | 1 | |
| --------------GCGGGTCTAGATGCCAGGAGTTGTC------------------------------- | 25 | 1 | - | |
| ---------------------TAGATGCCAGGAGTTGTC------------------------------- | 18 | - | 1 | |
| ----------------------------------------GGAATGCTTTGGCTTGTAC----------- | 19 | - | 1 | |
| rat | tggcagcgttgtttGCGGGTCTAGATGCCAGGAGTTGTCCGGAATGCTTTGGCTTGTACACAtgggacca | |||
| ********************************************************************** | ||||
| rat | .((...((.(((.((((((((.((...((.(((....)))))....))..)))))))).)))))...)). | 0.960 -17.90 | ||
| rat | chromosome:20:5548472:5548541:1 | intergenic |
sblock7664 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.228 | no | no | 0.37/0.45 | 18/20/0.57 | 0.0 2.0 0.0 0.0 | 0.0 2.0 0.0 0.0 | 1 3 1 2 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 3 18 28 18 | 15 -4 -11 -5 | 5arm 5arm_loop 5arm_loop_3arm 3arm_loop | 3 3 3 3 | nd nd nd nd | 0.42 0.32 0.30 0.30 | 4 3 5 4 | 7 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------UCUCUAU---------------------------------------------- | 2 | novel |
| seed | --------------------------------------GCAAUGG------------------------------ | 2 | novel |
| seed | -------------------GUGUCUC------------------------------------------------- | 1 | novel |
| seed | ----GAGGAAA---------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------CAUAUCC--------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------AGCAATGGGTGGATAATAAG------------------ | 20 | 2 | |
| ----------------------------TCATATCCAAGCAATGGGTG--------------------------- | 20 | 1 | |
| ------------------TGTGTCTCTATCATATCCA-------------------------------------- | 19 | 1 | |
| ---TGAGGAAATCTTTGTTGTG----------------------------------------------------- | 19 | 1 | |
| ---------------------GTCTCTATCATATCCAAGCA---------------------------------- | 20 | 1 | |
| ---------------------GTCTCTATCATATCCAAG------------------------------------ | 18 | 1 | |
| rat | gtcTGAGGAAATCTTTGTTGTGTCTCTATCATATCCAAGCAATGGGTGGATAATAAGgccaagaattatatgact | ||
| *************************************************************************** | |||
| rat | (((.....((.((((.((..(((...((((.((((((.....)))))))))))))..)).)))).))....))). | 0.500 -14.80 |
| rat | chromosome:3:141074611:141074685:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK (7 loci)
sblock11569 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.39/0.67 | 18/20/0.12 | 0.0 0.7 0.0 1.7 | 0.0 0.7 0.0 2.7 | 1 3 1 3 | 0 0 0 0 | 1 2 1 3 | 0 0 0 0 | 4 23 28 18 | 19 -1 0 5 | 5arm 5arm_loop 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.33 0.17 0.21 0.21 | 4 2 2 2 | 8 | 6 | 1 | -1 |
| reads | miRBase family seed | |||||||
| seed | -------------------------CAGUCCG------------------------------------------------------------ | 2 | novel | |||||
| seed | ----------------------------------------------CCGUCUG--------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CUAGACU------------------------------ | 1 | novel | |||||
| seed | ------------------------GCAGUCC------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------GGUCUAG--------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------UGGUCUA---------------------------------- | 1 | novel | |||||
| seed | -----GACUGUU-------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T5S1 | |||
| ------------------------GCAGTCCGGGCTAGAGAT-------------------------------------------------- | 18 | - | - | - | 1 | - | 1 | |
| -----------------------CGCAGTCCGGGCTAGAGA--------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| ---------------------------------------------------TGGTCTAGACTGTGGAGAG---------------------- | 19 | - | - | - | - | 1 | - | |
| ----AGACTGTTTTGTAGCTTC---------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| ------------------------------------------------------TCTAGACTGTGGAGAGCTGT------------------ | 20 | - | 1 | - | - | - | - | |
| --------------------------------------------------CTGGTCTAGACTGTGGAG------------------------ | 18 | - | - | 1 | - | - | - | |
| ---------------------------------------------TCCGTCTGGTCTAGACTGT---------------------------- | 19 | - | - | - | - | 1 | - | |
| rat | gggaAGACTGTTTTGTAGCTTCtCGCAGTCCGGGCTAGAGATtgcTCCGTCTGGTCTAGACTGTGGAGAGCTGTtccgcggtctacacacca | |||||||
| ******************************************************************************************** | ||||||||
| rat | ((..(((((((....((((((..(((((((..(((((((((....))..)))))))..)))))))..))))))....))))))).....)). | 1.000 -41.30 | ||||||
| rat | chromosome:8:38458918:38459009:-1 | intergenic |
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