other hairpins
novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK (7 loci)
sblock2833 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.21/0.63 | 19/22/0.50 | 0.0 0.0 1.5 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 16 21 18 | -1 -9 -5 | 5arm_loop 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.42 0.45 0.26 | 3 5 2 | 4 | 1 | -1 | 1 |
| reads | miRBase family seed | ||
| seed | --------------------------------------CAACCGG----------------------------- | 1 | novel |
| seed | ----------------------UUUGUUU--------------------------------------------- | 1 | novel |
| seed | -----------------------------------UUUCAAC-------------------------------- | 1 | novel |
| seed | -----------------AAGAUUU-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------CAAGATTTTGTTTTAGTTT--------------------------------------- | 19 | 1 | |
| ---------------------TTTTGTTTTAGTTTTTTCAACC------------------------------- | 22 | 1 | |
| ----------------------------------TTTTCAACCGGGAGGGAGTAGC------------------ | 22 | 1 | |
| -------------------------------------TCAACCGGGAGGGAGTAGC------------------ | 19 | 1 | |
| rat | ggacccgagggataagCAAGATTTTGTTTTAGTTTTTTCAACCGGGAGGGAGTAGCtttcccttaaagggtccc | ||
| ************************************************************************** | |||
| rat | ((((((((((((.((((...(((((.(((..(((.....)))..))).))))).))))))))))...)))))). | 0.970 -29.70 |
| rat | chromosome:10:92625613:92625686:1 | intergenic |
sblock5311 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.50/0.53 | 19/26/0.33 | 0.0 3.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 7 29 | 19 -2 | 5arm 3arm | 1 1 | nd nd | 0.13 0.21 | 1 2 | 3 | 2 | 0 | 21 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------GACUCUG---------------------------------------- | 1 | novel | |
| seed | --------GCCCUUC------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------ACCACUU----------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------TGCCCTTCTAGCTCCTTTGTCTG--------------------------------------------------------------------------- | 23 | - | 1 | |
| ---------------------------------------------------------TGACTCTGACCTTGCTGAC----------------------------- | 19 | - | 1 | |
| --------------------------------------------------TACCACTTGACTCTGACCTTGCTGAC----------------------------- | 26 | 1 | - | |
| rat | ctcctcaTGCCCTTCTAGCTCCTTTGTCTGgcgaccttggaggttatgggTACCACTTGACTCTGACCTTGCTGACaataggacctggtggtggctccttggagt | |||
| ********************************************************************************************************* | ||||
| rat | ((((....(((((.((((.(((((((((.(((((..((((((....(((...))).....))))))..)))))))))).)))).)))).)).))).....)))). | 0.990 -39.10 | ||
| rat | chromosome:17:20781643:20781747:1 | intergenic |
sblock5901 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.37/0.60 | 18/21/0.57 | 0.0 0.0 1.5 1.3 | 0.0 0.0 1.5 2.0 | 1 1 2 3 | 0 0 0 0 | 1 1 2 2 | 0 0 0 0 | 17 37 29 11 | 8 -10 -4 11 | 5arm 3arm_loop 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.39 0.50 0.26 0.43 | 3 9 3 3 | 7 | 4 | -12 | -11 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------ACAUAGC---------------------------- | 2 | novel | |||
| seed | --------------------------------------------CCCAGUC------------------------------------------------- | 1 | novel | |||
| seed | ------------------GAGACAG--------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------AGCCUGA------------------------ | 1 | novel | |||
| seed | --------------------------------------------------CCUUGGC------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------UGGCCUU---------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TAGCCTGAAACACAGTCCCAG----------- | 21 | - | - | - | 1 | |
| ----------------------------------------------------------------TACATAGCCTGAAACACAGTC--------------- | 21 | - | 1 | - | - | |
| -------------------------------------------CCCCAGTCCTTGGCCTTACT------------------------------------- | 20 | - | - | 1 | - | |
| ----------------------------------------------------------------TACATAGCCTGAAACACAGT---------------- | 20 | - | - | - | 1 | |
| ----------------------------------------------------TTGGCCTTACTATACATAG----------------------------- | 19 | - | - | - | 1 | |
| -------------------------------------------------TCCTTGGCCTTACTATACA-------------------------------- | 19 | 1 | - | - | - | |
| -----------------TGAGACAGATCTGTATAG----------------------------------------------------------------- | 18 | - | - | - | 1 | |
| rat | gatggtctgcctgcttgTGAGACAGATCTGTATAGcagggccaCCCCAGTCCTTGGCCTTACTATACATAGCCTGAAACACAGTCCCAGcatacctgtca | |||||
| **************************************************************************************************** | ||||||
| rat | ((((((.((.(((.(((((...(((...(((((((.(((((((..........))))))).)))))))....)))...)))))...))))).))).))). | 1.000 -32.70 | ||||
| rat | chromosome:19:40008999:40009098:1 | intergenic |
sblock8051 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.44/0.65 | 18/23/0.45 | 0.0 0.0 3.5 1.5 0.0 0.0 | 0.0 0.0 2.2 0.5 0.0 0.0 | 1 2 4 2 1 1 | 0 0 0 0 0 0 | 1 1 1 1 1 1 | 0 0 0 0 0 0 | 0 8 14 31 21 4 | 26 16 5 -8 -2 16 | 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.53 0.24 0.16 0.33 0.16 0.33 | 5 5 2 5 1 6 | 11 | 1 | -6 | -5 |
| reads | miRBase family seed | ||
| seed | ---------------GGACUCU------------------------------------------------------------------ | 2 | novel |
| seed | ----------------------GCAGGAC----------------------------------------------------------- | 2 | novel |
| seed | ---------GUCCAGG------------------------------------------------------------------------ | 2 | novel |
| seed | --------------------------------GAGGCUA------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------------AAUACUU-------------- | 1 | novel |
| seed | -----------------------------------GCUAGGC---------------------------------------------- | 1 | novel |
| seed | -GACCUGC-------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------CCUGGAU-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------TGTCCAGGGACTCTGCAGGAC----------------------------------------------------------- | 21 | 2 | |
| ---------------------TGCAGGACCTTGAGGCTAG------------------------------------------------ | 19 | 2 | |
| TGACCTGCTGTCCAGGGAC--------------------------------------------------------------------- | 19 | 1 | |
| ------------------------------------------------------------------TAATACTTTGCAGCTGGG---- | 18 | 1 | |
| ----------------------------------GGCTAGGCTGGCTTTCCTG----------------------------------- | 19 | 1 | |
| --------------GGGACTCTGCAGGACCTTGAGGC--------------------------------------------------- | 23 | 1 | |
| ------------------------------------------------TCCTGGATGGCTTCAGGTT--------------------- | 19 | 1 | |
| -------------------------------TGAGGCTAGGCTGGCTTTCCT------------------------------------ | 21 | 1 | |
| --------------GGGACTCTGCAGGACCTTGA------------------------------------------------------ | 20 | 1 | |
| rat | TGACCTGCTGTCCAGGGACTCTGCAGGACCTTGAGGCTAGGCTGGCTTTCCTGGATGGCTTCAGGTTAATACTTTGCAGCTGGGcagc | ||
| **************************************************************************************** | |||
| rat | ......(((((((((.....((((((((((.((((((((..((((.....)))).))))))))))))......))))))))))))))) | 1.000 -36.60 |
| rat | chromosome:3:76967438:76967525:1 | intergenic |
sblock8185 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.26/0.45 | 19/23/0.62 | 0.0 0.7 1.3 | 0.0 0.3 0.0 | 2 3 3 | 0 0 0 | 1 1 1 | 0 0 0 | 19 56 26 | 19 -17 2 | 5arm 5arm_loop_3arm 3arm | 1 1 2 | nd nd nd | 0.36 0.40 0.16 | 5 4 2 | 8 | 1 | -18 | -15 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------ACUUAAU----------------------------------------- | 2 | novel |
| seed | --------------------GAGUGUU---------------------------------------------------------------------------------------- | 2 | novel |
| seed | -----------------------------------------------------------GAAGACA------------------------------------------------- | 2 | novel |
| seed | -----------------------------------------------------------------------AAUGAUU------------------------------------- | 1 | novel |
| seed | ---------------------------------------------------------GUGAAGA--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------TGAGTGTTATCCATGCAGTCTG-------------------------------------------------------------------------- | 22 | 2 | |
| ------------------------------------------------------------------TACTTAATGATTATACACCAGAG-------------------------- | 23 | 2 | |
| ----------------------------------------------------------TGAAGACATACTTAATGAT-------------------------------------- | 19 | 2 | |
| --------------------------------------------------------TGTGAAGACATACTTAATGA--------------------------------------- | 20 | 1 | |
| ----------------------------------------------------------------------TAATGATTATACACCAGAG-------------------------- | 19 | 1 | |
| rat | tgggcttgggtctagattcTGAGTGTTATCCATGCAGTCTGgtaataatcatgattTGTGAAGACATACTTAATGATTATACACCAGAGcagacactaatctcagtccctctcca | ||
| ******************************************************************************************************************* | |||
| rat | .(((...(((.(((((((...((((((.....(((..((((((.((((((((....((((....))))....))))))))..)))))))))))))))))))).)).)))..))). | 1.000 -36.30 |
| rat | chromosome:3:140149310:140149424:1 | intergenic |
sblock9179 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.33/0.65 | 18/25/0.56 | 4.2 0.0 0.0 0.0 | 2.8 2.0 0.0 0.0 | 4 3 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 2 27 12 0 | 11 -4 14 26 | 5arm 3arm_loop 3arm 3arm | 1 2 5 5 | nd nd nd nd | 0.20 0.35 0.30 0.26 | 3 4 4 3 | 9 | 3 | 0 | 18 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------CUCAGCC------------------------------------------ | 3 | novel | ||
| seed | ---CCAGGUG---------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -------------------------------------------------------------------AGGGCGC------------------------ | 1 | novel | ||
| seed | -------------------------------------------------------------------------------GGAGACC------------ | 1 | novel | ||
| seed | ------------UUCGUUU------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------UUUCGUU-------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T4S1 | T5S1 | |||
| --TCCAGGTGTTTTCGTTTTCGACCTT----------------------------------------------------------------------- | 25 | - | - | 2 | |
| -----------TTTCGTTTTCGACCTTTTCC------------------------------------------------------------------- | 20 | - | - | 1 | |
| ------------------------------------------------------------------TAGGGCGCCACATGGAGACC------------ | 20 | - | 1 | - | |
| ------------------------------------------------------------------------------TGGAGACCGGCTTGGACTAG | 20 | 1 | - | - | |
| ------------------------------------------------TCTCAGCCCTTGGCTCTTT------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------TCTCAGCCCTTGGCTCTT-------------------------------- | 18 | - | - | 1 | |
| ----------TTTTCGTTTTCGACCTTTTCCTTT---------------------------------------------------------------- | 24 | - | - | 1 | |
| ------------------------------------------------TCTCAGCCCTTGGCTCTTTAGGG--------------------------- | 23 | - | - | 1 | |
| rat | cgTCCAGGTGTTTTCGTTTTCGACCTTTTCCTTTagcttggggtttcaTCTCAGCCCTTGGCTCTTTAGGGCGCCACATGGAGACCGGCTTGGACTAG | ||||
| ************************************************************************************************** | |||||
| rat | .((((((((((((((((...((.((((.......((((.((((((.......)))))).))))....))))))....))))))))..))))))))... | 0.990 -34.80 | |||
| rat | chromosome:4:164708007:164708104:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH (7 loci)
sblock10396 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.855 | no | no | 0.35/0.53 | 19/20/0.17 | 2.6 0.0 | 2.4 0.0 | 5 1 | 0 0 | 4 1 | 0 0 | 17 3 | 4 16 | 5arm 3arm | 73 88 | nd nd | 0.42 0.42 | 6 5 | 6 | 4 | 10 | 8 |
| reads | miRBase family seed | |||||
| seed | ------------------------AGAUAUG------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------AAUGACA------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------ACAGAUA--------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------AUGACAG------------------------------------------------------------------ | 1 | novel | |||
| seed | -----------------------------------------------------------------------UAAGUCU-------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S2 | T5S1 | |||
| -----------------------CAGATATGACGAGATCCGC-------------------------------------------------- | 19 | 2 | - | - | - | |
| ---------------------GACAGATATGACGAGATCC---------------------------------------------------- | 19 | - | - | 1 | - | |
| ------------------AATGACAGATATGACGAGA------------------------------------------------------- | 19 | - | 1 | - | - | |
| ----------------------------------------------------------------------CTAAGTCTGTGGCTCGCAT--- | 19 | - | - | - | 1 | |
| -----------------TAATGACAGATATGACGAGA------------------------------------------------------- | 20 | - | - | - | 1 | |
| rat | gctattagggccaattaTAATGACAGATATGACGAGATCCGCtgccactggggaggcaacgtcctgggtcCTAAGTCTGTGGCTCGCATtgc | |||||
| ******************************************************************************************** | ||||||
| rat | ((.....(((((..........((((((..(((......((.((((........)))).))......)))....))))))))))).....)) | 0.610 -22.00 | ||||
| rat | chromosome:6:122684417:122684508:1 | intergenic |
sblock11861 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.431 | no | no | 0.47/0.57 | 18/21/0.40 | 2.0 0.0 | 1.7 0.0 | 3 2 | 0 0 | 3 1 | 0 0 | 32 13 | 1 17 | 5arm 3arm | 13 13 | nd nd | 0.32 0.52 | 4 9 | 5 | 4 | 17 | 19 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------------------------UUCUAUG-------------------------- | 2 | novel | |||
| seed | ------------------------------------GUACCGG--------------------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------------------GAUGUAC------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------------------------------------------------CTTCTATGTGCCCGCAGAACC------------- | 21 | - | - | 2 | - | |
| -----------------------------------TGTACCGGACTGAGATTCG---------------------------------------------------------------- | 19 | - | 1 | - | - | |
| --------------------------------AGATGTACCGGACTGAGAT------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| -----------------------------------TGTACCGGACTGAGATTC----------------------------------------------------------------- | 18 | 1 | - | - | - | |
| rat | gaaggcaaagcactatcacaaggagtacagacAGATGTACCGGACTGAGATTCGcatggctaggatggcgaggaaagctggcaaCTTCTATGTGCCCGCAGAACCaaaattggccttt | |||||
| ********************************************************************************************************************** | ||||||
| rat | ((((((...............((.(((((...(((.((.((((.((....(((((............)))))...))))))..)).))).)))))))...............)))))) | 0.730 -29.41 | ||||
| rat | chromosome:8:91049804:91049921:-1 | intergenic |
sblock1278 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.709 | no | no | 0.45/0.55 | 19/24/0.50 | 0.0 0.0 3.0 | 0.0 0.0 1.0 | 4 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 30 30 12 | 8 0 14 | 5arm 3arm 3arm | 44 44 44 | nd nd nd | 0.32 0.32 0.33 | 4 4 5 | 8 | 2 | -5 | -6 |
| reads | miRBase family seed | |||
| seed | -------------------------------GAGCACA-------------------------------------------------------------------------------- | 4 | novel | |
| seed | -----------------------------AUGAGCA---------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------GUACCUG-------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------CCUUCUG------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------GCAUGUU------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------TGAGCACAGAGCAAACTGG--------------------------------------------------------------------- | 19 | - | 4 | |
| ----------------------------AATGAGCACAGAGCAAACTG---------------------------------------------------------------------- | 20 | - | 1 | |
| --------------------------------------------------------------------------------------TGCATGTTCTCTGGACGATC------------ | 20 | - | 1 | |
| ------------------------------------------------------------------TGTACCTGGGTTGTGCCTTCTG------------------------------ | 22 | 1 | - | |
| --------------------------------------------------------------------------------GCCTTCTGCATGTTCTCTGGACGA-------------- | 24 | - | 1 | |
| rat | gggaactggaaaacagagccagaggaagaaTGAGCACAGAGCAAACTGGgatggacaaagcacaaatgtacctgggttgtgccttctgcatgttctctggacgatcgccttgtgcctc | |||
| ********************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||
| rat | (((.((.((.........((((((((...(((....(((((((..(((((....(((.........))).)))))....)))..))))))).)))))))).......))..)).))). | 0.640 -28.69 | ||
| rat | chromosome:1:47837819:47837936:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock8606 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.755 | no | no | 0.56/0.67 | 19/26/0.25 | 5.7 0.0 | 6.7 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 20 7 | 2 24 | 5arm 3arm | 26 26 | nd nd | 0.48 0.37 | 6 4 | 4 | 3 | 24 | 17 |
| reads | miRBase family seed | ||||
| seed | ---------------------CUCCCUG------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------------CCGCUAU------------------ | 1 | novel | ||
| seed | ------------------------------GGCUCCU---------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------AGGCUCC----------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T5S1 | |||
| --------------------GCTCCCTGGAGGCTCCTGACACAC--------------------------------------------------------------------- | 24 | - | - | 1 | |
| -----------------------------AGGCTCCTGACACACCTAGATCACC----------------------------------------------------------- | 25 | - | 1 | - | |
| ---------------------------------------------------------------------------------------CCCGCTATGCACTGCAACT------- | 19 | 1 | - | - | |
| ----------------------------GAGGCTCCTGACACACCTAGATCACC----------------------------------------------------------- | 26 | - | - | 1 | |
| rat | cctgaagactcggcaatcctGCTCCCTGGAGGCTCCTGACACACCTAGATCACCgccctttctgcgttggtctctctaaagtccgttCCCGCTATGCACTGCAACTtccttgg | ||||
| ***************************************************************************************************************** | |||||
| rat | ((.((((.....(((....(((....(((..((....(((......((((((.(((.......))).)))))).......))).))..)))....))).)))..))))...)) | 0.420 -22.72 | |||
| rat | chromosome:4:150451974:150452086:-1 | intergenic |
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