other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH (7 loci)
sblock8611 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.755 | no | no | 0.56/0.67 | 19/26/0.25 | 5.7 0.0 | 6.7 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 20 7 | 2 24 | 5arm 3arm | 26 26 | nd nd | 0.48 0.37 | 6 4 | 4 | 3 | 24 | 17 |
| reads | miRBase family seed | ||||
| seed | ---------------------CUCCCUG------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------------CCGCUAU------------------ | 1 | novel | ||
| seed | ------------------------------GGCUCCU---------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------AGGCUCC----------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T5S1 | |||
| --------------------GCTCCCTGGAGGCTCCTGACACAC--------------------------------------------------------------------- | 24 | - | - | 1 | |
| -----------------------------AGGCTCCTGACACACCTAGATCACC----------------------------------------------------------- | 25 | - | 1 | - | |
| ---------------------------------------------------------------------------------------CCCGCTATGCACTGCAACT------- | 19 | 1 | - | - | |
| ----------------------------GAGGCTCCTGACACACCTAGATCACC----------------------------------------------------------- | 26 | - | - | 1 | |
| rat | cctgaagactcggcaatcctGCTCCCTGGAGGCTCCTGACACACCTAGATCACCgccctttctgcgttggtctctctaaagtccgttCCCGCTATGCACTGCAACTtccttgg | ||||
| ***************************************************************************************************************** | |||||
| rat | ((.((((.....(((....(((....(((..((....(((......((((((.(((.......))).)))))).......))).))..)))....))).)))..))))...)) | 0.420 -22.72 | |||
| rat | chromosome:4:150454132:150454244:-1 | intergenic |
sblock8620 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.755 | no | no | 0.56/0.67 | 19/26/0.25 | 5.7 0.0 | 6.7 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 20 7 | 2 24 | 5arm 3arm | 26 26 | nd nd | 0.48 0.37 | 6 4 | 4 | 3 | 24 | 17 |
| reads | miRBase family seed | ||||
| seed | ---------------------CUCCCUG------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------------CCGCUAU------------------ | 1 | novel | ||
| seed | ------------------------------GGCUCCU---------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------AGGCUCC----------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T5S1 | |||
| --------------------GCTCCCTGGAGGCTCCTGACACAC--------------------------------------------------------------------- | 24 | - | - | 1 | |
| -----------------------------AGGCTCCTGACACACCTAGATCACC----------------------------------------------------------- | 25 | - | 1 | - | |
| ---------------------------------------------------------------------------------------CCCGCTATGCACTGCAACT------- | 19 | 1 | - | - | |
| ----------------------------GAGGCTCCTGACACACCTAGATCACC----------------------------------------------------------- | 26 | - | - | 1 | |
| rat | cctgaagactcggcaatcctGCTCCCTGGAGGCTCCTGACACACCTAGATCACCgccctttctgcgttggtctctctaaagtccgttCCCGCTATGCACTGCAACTtccttgg | ||||
| ***************************************************************************************************************** | |||||
| rat | ((.((((.....(((....(((....(((..((....(((......((((((.(((.......))).)))))).......))).))..)))....))).)))..))))...)) | 0.420 -22.72 | |||
| rat | chromosome:4:150575578:150575690:-1 | intergenic |
sblock8690 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.730 | no | no | 0.56/0.67 | 19/26/0.25 | 5.7 0.0 | 6.7 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 20 7 | 2 24 | 5arm 3arm | 26 26 | nd nd | 0.48 0.37 | 6 4 | 4 | 3 | 24 | 17 |
| reads | miRBase family seed | ||||
| seed | ---------------------CUCCCUG------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------------CCGCUAU------------------ | 1 | novel | ||
| seed | ------------------------------GGCUCCU---------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------AGGCUCC----------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T5S1 | |||
| --------------------GCTCCCTGGAGGCTCCTGACACAC--------------------------------------------------------------------- | 24 | - | - | 1 | |
| -----------------------------AGGCTCCTGACACACCTAGATCACC----------------------------------------------------------- | 25 | - | 1 | - | |
| ---------------------------------------------------------------------------------------CCCGCTATGCACTGCAACT------- | 19 | 1 | - | - | |
| ----------------------------GAGGCTCCTGACACACCTAGATCACC----------------------------------------------------------- | 26 | - | - | 1 | |
| rat | catgaagacttggcaatcctGCTCCCTGGAGGCTCCTGACACACCTAGATCACCgccctttctgcgttggtctctctaaagtccgttCCCGCTATGCACTGCAACTtccttgg | ||||
| ***************************************************************************************************************** | |||||
| rat | ((.((((.....(((....(((....(((..((....(((......((((((.(((.......))).)))))).......))).))..)))....))).)))..))))..)). | 0.470 -22.72 | |||
| rat | chromosome:4:150763677:150763789:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH (7 loci)
sblock10805 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.32/0.56 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 23 42 0 | 7 -11 35 | 5arm 5arm_loop_3arm 3arm | 1 2 2 | nd nd nd | 0.42 0.44 0.35 | 6 5 3 | 3 | 3 | 0 | -15 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------------------------------UCGAAAC---------- | 1 | novel | ||
| seed | -------------------------------------------UGGCAGA--------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------UGGUGCU---------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T3S2 | |||
| ------------------------------------------CTGGCAGATTCTCTCCAT----------------------------------------------- | 18 | - | - | 1 | |
| -----------------------ATGGTGCTTTCTAAAACTA----------------------------------------------------------------- | 19 | - | 1 | - | |
| -----------------------------------------------------------------------------------------ATCGAAACGGGTGGGGAA | 18 | 1 | - | - | |
| rat | ctgattcttttcagtttcaggtgATGGTGCTTTCTAAAACTACTGGCAGATTCTCTCCATgaagcttaccaaaagcaccatcatctgagATCGAAACGGGTGGGGAA | ||||
| *********************************************************************************************************** | |||||
| rat | ((.((((.((((.((((((((((((((((((((......((..(((.((.....)))))...)).......)))))))))))))))))))).)))).)))).))... | 0.970 -41.62 | |||
| rat | chromosome:7:34034111:34034217:-1 | intergenic |
sblock11614 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.52/0.58 | 19/25/0.00 | 0.0 0.0 | 3.0 0.0 | 2 8 | 0 0 | 1 1 | 0 0 | 7 10 | -8 -4 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.37 0.37 | 3 3 | 10 | 1 | 0 | -3 |
| reads | miRBase family seed | ||
| seed | --------------------------AGACACG--------------------- | 8 | novel |
| seed | --------GGUAGUU--------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------TAGACACGAGTGCGTCCTG---------- | 19 | 8 | |
| -------TGGTAGTTTGCACGGTGCTAGACAC---------------------- | 25 | 1 | |
| -------TGGTAGTTTGCACGGTGCT---------------------------- | 19 | 1 | |
| rat | tccagcatggtagtttgcacggtgcTAGACACGAGTGCGTCCTGcggtactgga | ||
| ****************************************************** | |||
| rat | (((((.((.((((..(((((.(((.....)))..)))))..)))).)).))))) | 1.000 -24.60 |
| rat | chromosome:8:57712802:57712855:-1 | intergenic |
sblock4857 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.57/0.75 | 19/21/0.67 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 28 51 38 | 8 -13 -8 | 5arm 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.33 0.74 0.55 | 2 13 7 | 3 | 3 | 0 | -18 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------------UCCCCCC-------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------CAGCUCA------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------CACCCAG------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| ---------------------------------------------------GCAGCTCATCTTTCCCCCC-------------------------------------------------- | 19 | 1 | - | - | |
| --------------------------------------------------------------TTCCCCCCAGCATGGCCCGC-------------------------------------- | 20 | - | - | 1 | |
| ----------------------------ACACCCAGCAGCAGGATCAGA----------------------------------------------------------------------- | 21 | - | 1 | - | |
| rat | ggctagcctggtggcagcagcgcaaactACACCCAGCAGCAGGATCAGAggGCAGCTCATCTTTCCCCCCAGCATGGCCCGCtgctccgcttgggccatctgctgcctcctggggagcct | ||||
| ************************************************************************************************************************ | |||||
| ..............................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000025656 ENSRNOG00000018952 Sema3g | ||||
| rat | ((((..((.((.((((((((...........((((..(((.(((.(((.((((.(((.............)))...)))).))).))))))))))....)))))))).)).))..)))). | 0.990 -53.48 | |||
| rat | chromosome:16:6651330:6651449:1 | Same_strand|Boundary_non-coding|ENSRNOT00000025656|ENSRNOG00000018952 ## intergenic ## ENSRNOG00000018952|protein_coding|Sema3g|Semaphorin 3G (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5CCT7] |
sblock6229 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 30 4 | -1 17 | 5arm_loop 3arm | 1 1 | nd nd | 0.50 0.33 | 3 3 | 2 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------UUAAGUG-------------- | 1 | novel | |
| seed | -------------------------------AAAGGUG------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S2 | |||
| ------------------------------TAAAGGTGGGAGGGAAGG-------------------------------------------- | 18 | 1 | - | |
| ----------------------------------------------------------------------GTTAAGTGGGAAGCTGGG---- | 18 | - | 1 | |
| rat | atactaactttctcaaagtaaacagaaacaTAAAGGTGGGAGGGAAGGaaaagctgccattaccacctctGTTAAGTGGGAAGCTGGGtgtg | |||
| ******************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013023 ENSRNOG00000009704 Bank1 | |||
| rat | (((((...(((((((.....((((((........(((((...((.((......)).))....)))))))))))...)))))))...))))). | 1.000 -25.80 | ||
| rat | chromosome:2:233490166:233490257:-1 | Same_strand|Intronic_coding|ENSRNOT00000013023|ENSRNOG00000009704 ## ENSRNOG00000009704|protein_coding|Bank1|B-cell scaffold protein with ankyrin repeats 1 Gene [Source:MGI Symbol;Acc:MGI:2442120] |
sblock854 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.56/0.61 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 58 9 | -8 13 | 5arm_loop 3arm | 1 1 | nd nd | 0.61 0.33 | 9 3 | 2 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------------------UCUCAGC------------------- | 1 | novel |
| seed | -----------------------------------------------------------GUGCUAC------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------------------------------------AGTGCTACTGAACCCCCC-------------------------------------------- | 18 | 1 | |
| ---------------------------------------------------------------------------------------------CTCTCAGCAGCAAGTGTG--------- | 18 | 1 | |
| rat | nnnnnnnnnnnnnnnnagataaaggattcgcaggaagctcagctcacaagggtgccccAGTGCTACTGAACCCCCCtttccagtcactttaccCTCTCAGCAGCAAGTGTGatactttta | ||
| ************************************************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000016442 ENSRNOG00000012061 Prkcb1 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000016418 ENSRNOG00000012061 Prkcb1 | ||
| rat | ...................((((((..(((((....(((..(((....((((((....((((..((((............)))))))).))))))...))))))...)))))..)))))) | 0.990 -23.70 |
| rat | chromosome:1:181231153:181231272:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016418|ENSRNOG00000012061 ## ENSRNOG00000012061|protein_coding|Prkcb1|Protein kinase C beta type (EC 2.7.11.13) (PKC-beta) (PKC-B). [Source:UniProtKB/Swiss-Prot;Acc:P68403] |
sblock8863 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.47/0.53 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 16 35 | -1 1 | 5arm_loop 3arm | 1 1 | nd nd | 0.37 0.37 | 2 4 | 3 | 2 | 2 | 0 |
| reads | miRBase family seed | |||
| seed | -----------------CCCUGAU--------------------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------CUGUUGU---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S2 | |||
| ----------------ACCCTGATAGCATTAGGCC---------------------------------------------------------- | 19 | 2 | - | |
| ---------------------------------------CCTGTTGTAGCTTCACTGT----------------------------------- | 19 | - | 1 | |
| rat | ccagctggggagtgctACCCTGATAGCATTAGGCCagtgCCTGTTGTAGCTTCACTGTagcacttcacaaaaaaaaaaaaaaaaaatgttggc | |||
| ********************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000012111 ENSRNOG00000009085 Prkag2 | |||
| rat | (((((((.((((((((((..(((..(((.(((((....))))).)))....)))..)))))))))).))..................))))). | 1.000 -29.66 | ||
| rat | chromosome:4:5622135:5622227:1 | Same_strand|Intronic_coding|ENSRNOT00000012111|ENSRNOG00000009085 ## ENSRNOG00000009085|protein_coding|Prkag2|AMP-activated protein kinase gamma2 subunit [Source:RefSeq_peptide;Acc:NP_908940] |
sblock9360 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.53/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 23 11 | -2 11 | 5arm_loop 3arm | 1 2 | nd nd | 0.37 0.63 | 3 5 | 2 | 2 | 14 | 14 |
| reads | miRBase family seed | |||
| seed | ------------------------AGGGACC------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------------------------CAGAAAA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| -------------------------------------------------------CCAGAAAAGACAGCAGGAG----------- | 19 | 1 | - | |
| -----------------------AAGGGACCTCTCGTTGCCA------------------------------------------- | 19 | - | 1 | |
| rat | ctgggagtgaacctggaaagctgAAGGGACCTCTCGTTGCCAgggcagccgaggtCCAGAAAAGACAGCAGGAGccactccgagg | |||
| ************************************************************************************* | ||||
| ----------------------------------------------------------------------------------------------- | ENSRNOT00000059186 ENSRNOG00000024501 Rgs3 | |||
| ----------------------------------------------------------------------------------------------- | ENSRNOT00000020906 ENSRNOG00000024501 Rgs3 | |||
| ----------------------------------------------------------------------------------------------- | ENSRNOT00000059183 ENSRNOG00000024501 Rgs3 | |||
| ----------------------------------------------------------------------------------------------- | ENSRNOT00000021287 ENSRNOG00000024501 Rgs3 | |||
| ----------------------------------------------------------------------------------------------- | ENSRNOT00000059181 ENSRNOG00000024501 Rgs3 | |||
| rat | ((.((((((..((((.....((....(((((((..(((((....))))).))))))).....))....))))...)))))).)). | 1.000 -40.30 | ||
| rat | chromosome:5:79626692:79626776:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059180|ENSRNOG00000024501 ## Opposite_strand|Intronic_coding|ENSRNOT00000059181|ENSRNOG00000024501 ## ENSRNOG00000024501|protein_coding|Rgs3|Regulator of G-protein signaling 3 (RGS3) (SRB-RGS). [Source:UniProtKB/Swiss-Prot;Acc:P49797] |
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