other hairpins
novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH (7 loci)
novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH_bulgeHIGH (7 loci)
sblock10577 [novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.058 | no | no | 0.42/0.78 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 10 19 6 | 4 -5 13 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.37 0.32 0.33 | 4 4 3 | 3 | 3 | 2 | 2 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------GUGCGGG---------------- | 1 | novel | ||
| seed | -----------CCAGUGC-------------------------------------------------------- | 1 | novel | ||
| seed | --------------------CCGAAAG----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T3S2 | |||
| -------------------ACCGAAAGAAGTACTGTTG------------------------------------ | 19 | - | 1 | - | |
| ----------ACCAGTGCCACCGAAAGAA--------------------------------------------- | 19 | 1 | - | - | |
| --------------------------------------------------GGTGCGGGGCAAGCTCCC------ | 18 | - | - | 1 | |
| rat | taccagtgggACCAGTGCCACCGAAAGAAGTACTGTTGtggcttctgcgaGGTGCGGGGCAAGCTCCCtggtac | ||||
| ************************************************************************** | |||||
| rat | ((((((.(((.....((((.(((..((((((((....))).)))))........)))))))..))).)))))). | 0.970 -27.70 | |||
| rat | chromosome:7:10958977:10959050:-1 | intergenic |
sblock11071 [novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.767 | no | no | 0.50/0.63 | 19/20/0.67 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 23 51 19 | 11 -17 14 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.50 0.50 0.42 | 5 4 4 | 3 | 2 | 2 | 3 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------UGAACGC------------------------------ | 1 | novel | |
| seed | ----------------------------------------------------AGCACAC--------------------------------------------------- | 1 | novel | |
| seed | ------------------------GCGGAAU------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S1 | |||
| -----------------------CGCGGAATTGTGGGAAAGAA------------------------------------------------------------------- | 20 | - | 1 | |
| ------------------------------------------------------------------------CTGAACGCAGTGCAAGGCC------------------- | 19 | 1 | - | |
| ---------------------------------------------------GAGCACACTATTGACCAGAC--------------------------------------- | 20 | 1 | - | |
| rat | gaggtctgtcctctcttgaaggcCGCGGAATTGTGGGAAAGAAtggccatcGAGCACACTATTGACCAGACtCTGAACGCAGTGCAAGGCCgggttttgggaaacacttc | |||
| ************************************************************************************************************** | ||||
| rat | (((((...((((........((((.....((((((....(((.(((.((...((....))..)).)))...)))...))))))....)))).......))))...))))) | 0.770 -29.46 | ||
| rat | chromosome:7:137851930:137852039:-1 | intergenic |
sblock11933 [novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.331 | no | no | 0.50/0.63 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 7 | -1 1 | 5arm_loop 3arm | 1 1 | nd nd | 0.42 0.33 | 3 4 | 2 | 2 | 2 | 2 |
| reads | miRBase family seed | |||
| seed | ----------------------------------ACGAUGG----------------- | 1 | novel | |
| seed | -----------CUGCGUU---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S2 | |||
| ---------------------------------GACGATGGTAGACAGTTC------- | 18 | 1 | - | |
| ----------GCTGCGTTCTCCCAAGCAG----------------------------- | 19 | - | 1 | |
| rat | cggttaggcaGCTGCGTTCTCCCAAGCAGagctGACGATGGTAGACAGTTCcctcacc | |||
| ********************************************************** | ||||
| rat | .(((.(((.(((((...(((.(((..((....))....))).)))))))).))).))) | 0.990 -15.90 | ||
| rat | chromosome:8:127657542:127657599:-1 | intergenic |
sblock2996 [novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.545 | no | no | 0.58/0.63 | 19/20/0.20 | 0.0 0.5 0.0 | 0.0 0.5 0.0 | 2 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 11 16 8 | -3 -9 -2 | 5arm_loop 5arm_loop_3arm 3arm_loop | 2 2 2 | nd nd nd | 0.53 0.47 0.55 | 4 6 5 | 5 | 2 | 1 | 3 |
| reads | miRBase family seed | |||
| seed | ------------GUCACCC---------------------------------------- | 2 | novel | |
| seed | -----------------CCUGCAG----------------------------------- | 1 | novel | |
| seed | ------------------CUGCAGU---------------------------------- | 1 | miR-17/20b | |
| seed | --------------------------------UGCCCUG-------------------- | 1 | miR-874 | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| -----------AGTCACCCTGCAGTGTTCC----------------------------- | 19 | 2 | - | |
| -------------------------------ATGCCCTGAGTCCCACCAAC-------- | 20 | - | 1 | |
| -----------------CCTGCAGTGTTCCCATGCC----------------------- | 19 | 1 | - | |
| ----------------CCCTGCAGTGTTCCCATGC------------------------ | 19 | - | 1 | |
| rat | gcattgcttctAGTCACCCTGCAGTGTTCCCATGCCCTGAGTCCCACCAACtgtgatgc | |||
| *********************************************************** | ||||
| rat | (((((((.....((....((.(((.((......)).)))))....)).....))))))) | 0.910 -9.80 | ||
| rat | chromosome:11:80243319:80243377:-1 | intergenic |
sblock7781 [novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.380 | no | no | 0.42/0.61 | 18/19/0.00 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 2 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 0 14 24 5 | 19 4 -6 7 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.50 0.32 0.42 0.37 | 7 4 6 4 | 5 | 3 | 3 | 2 |
| reads | miRBase family seed | ||||
| seed | -------------------------GCGUAGA------------------------------------------ | 2 | novel | ||
| seed | ---------------GGUUUUA---------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------AGCCAUC---------------- | 1 | novel | ||
| seed | -UGCGUCU------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S2 | T5S2 | |||
| ------------------------AGCGTAGAGGATAAAGAGC------------------------------- | 19 | - | - | 2 | |
| ATGCGTCTGCTGGCAGGT-------------------------------------------------------- | 18 | - | - | 1 | |
| --------------AGGTTTTATGAGCGTAGAG----------------------------------------- | 19 | 1 | - | - | |
| --------------------------------------------------TAGCCATCAGTCCGCCTAC----- | 19 | - | 1 | - | |
| rat | ATGCGTCTGCTGGCAGGTTTTATGAGCGTAGAGGATAAAGAGCtgtgtttTAGCCATCAGTCCGCCTACcggct | ||||
| ************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002504 ENSRNOG00000025580 LOC679539 | ||||
| rat | ........(((((.((((....(((((.(((((.(((......))).)))))))..)))....)))).))))). | 0.780 -20.20 | |||
| rat | chromosome:3:158771121:158771194:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000013962|ENSRNOG00000025580 ## Same_strand|Intronic_coding|ENSRNOT00000002504|ENSRNOG00000025580 ## ENSRNOG00000025580|protein_coding|LOC679539|ubiquitin-conjugating enzyme E2 variant 1 [Source:RefSeq_peptide;Acc:NP_001103815] |
sblock7807 [novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.091 | no | no | 0.61/0.78 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 40 38 26 | -1 0 11 | 5arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.56 0.50 0.42 | 4 6 5 | 3 | 3 | 1 | 3 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------GGGGGCU------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------GGGUCCG--------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------CCAAGGC------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T3S2 | |||
| -------------------------------------------------------------GCCAAGGCGGAAGGGGGC-------------------------------------- | 18 | 1 | - | - | |
| ----------------------------------------AGGGTCCGATCGTCAGTG----------------------------------------------------------- | 18 | - | 1 | - | |
| ------------------------------------------------------------------------AGGGGGCTGGTGGAGTGGG-------------------------- | 19 | - | - | 1 | |
| rat | gcggctcgcttccggcctccatcttggctttgccagaggcAGGGTCCGATCGTCAGTGaaaGCCAAGGCGGAAGGGGGCTGGTGGAGTGGGgagcggttaggcgggagtggtgttgt | ||||
| ********************************************************************************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000018237 ENSRNOG00000013339 Gmeb2 | ||||
| rat | (((((((((((((.((((((.((((.((((..((((........((((.((....((....))...))))))......))))..)))).))))..))..)))))))))))).))))) | 0.940 -51.04 | |||
| rat | chromosome:3:170430347:170430463:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000018237|ENSRNOG00000013339 ## Same_strand|Boundary_non-coding|ENSRNOT00000044026|ENSRNOG00000013339 ## ENSRNOG00000013339|protein_coding|Gmeb2|Glucocorticoid modulatory element-binding protein 2 (GMEB-2). [Source:UniProtKB/Swiss-Prot;Acc:O88873] |
sblock3083 [novel_lenNOK_multiarm_DicerOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.663 | no | no | 0.50/0.56 | 18/18/0.00 | 0.0 0.0 0.7 | 0.0 0.0 0.7 | 1 1 3 | 0 0 0 | 1 1 2 | 0 0 0 | 37 41 32 | -3 -2 6 | 5arm_loop 3arm_loop 3arm | 1 2 2 | nd nd nd | 0.44 0.44 0.61 | 4 6 7 | 5 | 3 | 1 | 1 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------GGAAGAU------------------------------------------ | 2 | novel | ||
| seed | ----------------------------------------------------------------------AGGAAGA------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------UGCUGAA--------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------GAGUCAU--------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T3S1 | |||
| ----------------------------------------------------------------------AGGAAGATGTGAGCAACG-------------------------------- | 18 | - | 1 | 1 | |
| -------------------------------------GGAGTCATCTTCAGCTCC----------------------------------------------------------------- | 18 | 1 | - | - | |
| ---------------------------------------------------------------------GAGGAAGATGTGAGCAAC--------------------------------- | 18 | - | - | 1 | |
| -------------------------------------------------------------CTGCTGAAGAGGAAGATG----------------------------------------- | 18 | - | - | 1 | |
| rat | gaggggcggggcgtcaggaagagggcctagctaccctGGAGTCATCTTCAGCTCCgctgtaCTGCTGAAGAGGAAGATGTGAGCAACGggtccggcctcccaagacgatgctcgctgtcg | ||||
| ************************************************************************************************************************ | |||||
| ................................................................................................................>>>>>>>>>>>>>>>>>> | ENSRNOT00000029985 ENSRNOG00000028594 NP_001099363.1 | ||||
| rat | ((.((.((((.((((.(((...((((((.(((.........((.((((((((...........)))))))).)).......)))...))))))....)))...))))...)))))).)). | 0.400 -41.99 | |||
| rat | chromosome:11:31454957:31455076:1 | intergenic |
novel_lenNOK_multiarm_Multihit_loopOverlap_bulgeHIGH (7 loci)
block844154 [novel_lenNOK_multiarm_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.238 | no | no | 0.35/0.44 | 18/25/0.20 | 0.5 0.0 0.0 | 0.3 0.0 0.0 | 11 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 28 34 36 | -5 -16 -3 | 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 40 40 40 | nd nd nd | 0.26 0.36 0.44 | 4 5 5 | 15 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------UGACUAG------------------------------------------------------------- | 7 | novel |
| seed | -----------------------------UUGACUA-------------------------------------------------------------- | 5 | novel |
| seed | ---------------------------------------------UCAUAGG---------------------------------------------- | 1 | novel |
| seed | ----------------------------UUUGACU--------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------AGCCUUA-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------TTGACTAGCCTTATGATCA-------------------------------------------------- | 19 | 6 | |
| ----------------------------TTTGACTAGCCTTATGATC--------------------------------------------------- | 19 | 3 | |
| ----------------------------TTTGACTAGCCTTATGATCA-------------------------------------------------- | 20 | 2 | |
| ----------------------------------TAGCCTTATGATCATAGGGAGACAC--------------------------------------- | 25 | 1 | |
| ---------------------------CTTTGACTAGCCTTATGATC--------------------------------------------------- | 20 | 1 | |
| -----------------------------TTGACTAGCCTTATGATC--------------------------------------------------- | 18 | 1 | |
| --------------------------------------------ATCATAGGGAGACACTAG------------------------------------ | 18 | 1 | |
| rat | ggcatgcccaaaggctctttgcttcctcTTTGACTAGCCTTATGATCAtagggagacactaggccattggaagatgaggagaacaatgtgtctatgtt | ||
| ************************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------------ | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | ||
| ------------------------------------------------------------------------------------------------------------ | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | ||
| ------------------------------------------------------------------------------------------------------------ | ENSRNOT00000050327 ENSRNOG00000031160 LOC685793 | ||
| ------------------------------------------------------------------------------------------------------------ | ENSRNOT00000040838 ENSRNOG00000031160 LOC685793 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | ||
| rat | .(((((..((....((((((((((((....((.((((((((((....)))))).....))))..))..))))).))))))).......))..))))). | 0.780 -25.90 |
| rat | chromosome:1:50132522:50132619:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000049483|ENSRNOG00000030545 ## Same_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
block845418 [novel_lenNOK_multiarm_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.831 | no | no | 0.37/0.43 | 19/21/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 26 18 13 | -12 -7 0 | 5arm_loop_3arm 3arm_loop 3arm | 31 31 33 | nd nd nd | 0.47 0.52 0.26 | 7 6 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------GUUCUAU-------------------------------------- | 1 | novel |
| seed | -----------------------------------------GUGAUAA------------------------ | 1 | novel |
| seed | ----------------------------------AGCUCUU------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------TGTGATAAATGCCGTGTGT------------- | 19 | 1 | |
| ---------------------------------TAGCTCTTGTGATAAATGCCG------------------ | 21 | 1 | |
| --------------------------TGTTCTATAGCTCTTGTGA--------------------------- | 19 | 1 | |
| rat | atgctacttttgaccgcataagaattTGTTCTATAGCTCTTGTGATAAATGCCGTGTGTgctaggaccagta | ||
| ************************************************************************ | |||
| rat | .((((..(((((..((((((...(((((((.((.......)).)))))))....)))))).)))))..)))) | 0.970 -10.90 |
| rat | chromosome:1:50685906:50685977:-1 | intergenic |
block845878 [novel_lenNOK_multiarm_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.192 | no | no | 0.35/0.44 | 18/25/0.20 | 0.5 0.0 0.0 | 0.3 0.0 0.0 | 11 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 29 35 37 | -5 -16 -3 | 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 40 40 40 | nd nd nd | 0.26 0.36 0.44 | 4 5 5 | 15 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------UGACUAG-------------------------------------------------------------- | 7 | novel |
| seed | ------------------------------UUGACUA--------------------------------------------------------------- | 5 | novel |
| seed | ------------------------------------AGCCUUA--------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------UCAUAGG----------------------------------------------- | 1 | novel |
| seed | -----------------------------UUUGACU---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------TTGACTAGCCTTATGATCA--------------------------------------------------- | 19 | 6 | |
| -----------------------------TTTGACTAGCCTTATGATC---------------------------------------------------- | 19 | 3 | |
| -----------------------------TTTGACTAGCCTTATGATCA--------------------------------------------------- | 20 | 2 | |
| ----------------------------CTTTGACTAGCCTTATGATC---------------------------------------------------- | 20 | 1 | |
| -----------------------------------TAGCCTTATGATCATAGGGAGACAC---------------------------------------- | 25 | 1 | |
| ------------------------------TTGACTAGCCTTATGATC---------------------------------------------------- | 18 | 1 | |
| ---------------------------------------------ATCATAGGGAGACACTAG------------------------------------- | 18 | 1 | |
| rat | ggcatgcccaatggtacttctgcttcctcTTTGACTAGCCTTATGATCAtagggagacactaggccattggaagatgaggagaacaatgtgtctatgttg | ||
| **************************************************************************************************** | |||
| rat | ((((((..((...((.(((((.(((((....((.((((((((((....)))))).....))))..))..)))))...))))).))....))..)))))). | 0.740 -26.90 |
| rat | chromosome:1:50839270:50839369:-1 | intergenic |
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