other hairpins
novel_lenNOK_multiarm_Multihit_loopOverlap_bulgeHIGH (7 loci)
block963457 [novel_lenNOK_multiarm_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.831 | no | no | 0.37/0.43 | 19/21/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 26 18 13 | -12 -7 0 | 5arm_loop_3arm 3arm_loop 3arm | 31 31 33 | nd nd nd | 0.47 0.52 0.26 | 7 6 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------GUUCUAU-------------------------------------- | 1 | novel |
| seed | -----------------------------------------GUGAUAA------------------------ | 1 | novel |
| seed | ----------------------------------AGCUCUU------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------TGTGATAAATGCCGTGTGT------------- | 19 | 1 | |
| ---------------------------------TAGCTCTTGTGATAAATGCCG------------------ | 21 | 1 | |
| --------------------------TGTTCTATAGCTCTTGTGA--------------------------- | 19 | 1 | |
| rat | atgctacttttgaccgcataagaattTGTTCTATAGCTCTTGTGATAAATGCCGTGTGTgctaggaccagta | ||
| ************************************************************************ | |||
| ---------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||
| ---------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||
| rat | .((((..(((((..((((((...(((((((.((.......)).)))))))....)))))).)))))..)))) | 0.970 -10.90 |
| rat | chromosome:1:51818709:51818780:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_coding|ENSRNOT00000048246|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block960798 [novel_lenNOK_multiarm_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.238 | no | no | 0.35/0.44 | 18/25/0.20 | 0.5 0.0 0.0 | 0.3 0.0 0.0 | 11 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 28 34 36 | -5 -16 -3 | 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 40 40 40 | nd nd nd | 0.26 0.36 0.44 | 4 5 5 | 15 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------UGACUAG------------------------------------------------------------- | 7 | novel |
| seed | -----------------------------UUGACUA-------------------------------------------------------------- | 5 | novel |
| seed | ---------------------------------------------UCAUAGG---------------------------------------------- | 1 | novel |
| seed | ----------------------------UUUGACU--------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------AGCCUUA-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------TTGACTAGCCTTATGATCA-------------------------------------------------- | 19 | 6 | |
| ----------------------------TTTGACTAGCCTTATGATC--------------------------------------------------- | 19 | 3 | |
| ----------------------------TTTGACTAGCCTTATGATCA-------------------------------------------------- | 20 | 2 | |
| ----------------------------------TAGCCTTATGATCATAGGGAGACAC--------------------------------------- | 25 | 1 | |
| ---------------------------CTTTGACTAGCCTTATGATC--------------------------------------------------- | 20 | 1 | |
| -----------------------------TTGACTAGCCTTATGATC--------------------------------------------------- | 18 | 1 | |
| --------------------------------------------ATCATAGGGAGACACTAG------------------------------------ | 18 | 1 | |
| rat | ggcatgcccaaaggctctttgcttcctcTTTGACTAGCCTTATGATCAtagggagacactaggccattggaagatgaggagaacaatgtgtctatgtt | ||
| ************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | ||
| ------------------------------------------------------------------------------------------------------------ | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | ||
| ------------------------------------------------------------------------------------------------------------ | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | ||
| ------------------------------------------------------------------------------------------------------------ | ENSRNOT00000039913 ENSRNOG00000030545 LOC685793 | ||
| rat | .(((((..((....((((((((((((....((.((((((((((....)))))).....))))..))..))))).))))))).......))..))))). | 0.780 -25.90 |
| rat | chromosome:1:50083001:50083098:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059959|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000050327|ENSRNOG00000031160 ## Same_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## Opposite_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock10677 [novel_lenNOK_multiarm_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.078 | no | no | 0.32/0.50 | 18/22/0.25 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 0 44 25 | 36 -9 2 | 5arm 5arm_loop_3arm 3arm | 14 14 14 | nd nd nd | 0.39 0.26 0.32 | 5 4 3 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -ACCUAGG--------------------------------------------------------------------------------------------------- | 2 | novel |
| seed | -------------------------------------------------------------GAAAUAA--------------------------------------- | 1 | novel |
| seed | ---------------------------------------------GUCUUCA------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| GACCTAGGTTCTTGGAAG----------------------------------------------------------------------------------------- | 18 | 2 | |
| ------------------------------------------------------------TGAAATAACAGGGAAGCTCTCT------------------------- | 22 | 1 | |
| --------------------------------------------TGTCTTCAGATAGTTTTGA-------------------------------------------- | 19 | 1 | |
| rat | GACCTAGGTTCTTGGAAGatatgggtgggtggggggttgtggatTGTCTTCAGATAGTTTTGAAATAACAGGGAAGCTCTCTttatccccattctgatgagacaccc | ||
| *********************************************************************************************************** | |||
| rat | ......((((((((..(((.(((((.((..((((((((.....((((.((((((....))))))...))))...))))))))...))))))))))..))))).))). | 0.930 -32.60 |
| rat | chromosome:7:18783330:18783436:-1 | intergenic |
sblock10784 [novel_lenNOK_multiarm_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.942 | no | no | 0.50/0.61 | 18/24/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 36 13 6 | -4 9 22 | 5arm_loop_3arm 3arm 3arm | 16 16 16 | nd nd nd | 0.33 0.25 0.56 | 4 6 6 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------UGUCAUC----------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------GUGGACA---------------- | 1 | novel | ||
| seed | -------------------------------------UGACAUG-------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| ------------------------------------GTGACATGAGGCAGACAG---------------------------------------------- | 18 | 1 | - | - | |
| ----------------------------------------------------------------------------CGTGGACAAGAAGGCTGC------ | 18 | - | - | 1 | |
| ---------------------------------------------------------------GTGTCATCAAAGCCGTGGACAAGA------------- | 24 | - | 1 | - | |
| rat | tctctgactgtcctccacttggtcgttttgatgttcGTGACATGAGGCAGACAGttgctgtggGTGTCATCAAAGCCGTGGACAAGAAGGCTGCaggagc | ||||
| **************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010869 ENSRNOG00000008022 Apaf1 | ||||
| rat | .((((....(((.(((((..(((...(((((......((((((..(((((....)))))....)))))))))))))))))))......)))....)))). | 0.820 -24.00 | |||
| rat | chromosome:7:27984587:27984686:-1 | Same_strand|Intronic_coding|ENSRNOT00000010869|ENSRNOG00000008022 ## ENSRNOG00000008022|protein_coding|Apaf1|Apoptotic protease-activating factor 1 (Apaf-1). [Source:UniProtKB/Swiss-Prot;Acc:Q9EPV5] |
novel_lenNOK_shortStem_5varHIGH_randfoldOK (7 loci)
block877833 [novel_lenNOK_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.63/0.68 | 19/22/0.50 | 1.5 | 3.0 | 2 | 0 | 2 | 0 | 1 | 3 | 3arm | 1 | nd | 0.18 | 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------CCAACCA------------------ | 1 | novel | |
| seed | --------------------------------------------ACCAAGU--------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------------------------------ACCAACCAAGTCGCCCCCA------- | 19 | 1 | - | |
| -------------------------------------------AACCAAGTCGCCCCCACCCCCT- | 22 | - | 1 | |
| rat | agggggtgggggcccctgggtgaggagaaggaagcaaccaACCAACCAAGTCGCCCCCACCCCCTa | |||
| ****************************************************************** | ||||
| rat | (((((((((((((..((.(((..((....((......))..)).))).))..))))))))))))). | 1.000 -40.10 | ||
| rat | chromosome:1:121142876:121142941:-1 | intergenic ## {Repeats: dust 121142877 121142888 0 class=dust,trf 17 28 0 class=trf} |
block1413044 [novel_lenNOK_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.53/0.58 | 19/24/0.33 | 1.7 | 0.0 | 3 | 0 | 1 | 0 | 2 | 24 | 5arm | 2 | nd | 0.21 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------GACCACU---------------------------------------------------------------------------------------------------- | 2 | novel |
| seed | ---CUCCUGA--------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------TGACCACTGTGTAGCACAG----------------------------------------------------------------------------------------- | 19 | 2 | |
| --GCTCCTGACCACTGTGTAGCACAG----------------------------------------------------------------------------------------- | 24 | 1 | |
| rat | gtGCTCCTGACCACTGTGTAGCACAGccttcctccttatccccacagttccacagccaccagagctgctgtctctgaggattctaggcttgtgctcttactctggacatcttcac | ||
| ******************************************************************************************************************* | |||
| rat | (((....((.(((..(((.((((((((((...((((((....((((((((...........)))))).))....))))))....))))).)))))..)))..))).))....))) | 1.000 -34.80 |
| rat | chromosome:3:140484259:140484373:-1 | intergenic |
block1476415 [novel_lenNOK_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.44/0.45 | 18/20/0.20 | 2.0 | 0.4 | 5 | 0 | 4 | 0 | 4 | 27 | 5arm | 1 | nd | 0.22 | 2 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------UGGUAGA-------------------------------------------------------------------------------------------------- | 3 | novel | |||
| seed | ---------GUAGAGC------------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | -----AGUGGUA---------------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T5S1 | T5S2 | |||
| ------GTGGTAGAGCATTTTCAG---------------------------------------------------------------------------------------- | 18 | - | 1 | 1 | 1 | |
| --------GGTAGAGCATTTTCAGAG-------------------------------------------------------------------------------------- | 18 | - | - | - | 1 | |
| ----CAGTGGTAGAGCATTTTCAG---------------------------------------------------------------------------------------- | 20 | 1 | - | - | - | |
| rat | ggttCAGTGGTAGAGCATTTTCAGAGtgtgtttaagattcaggcttctatgctttagacagcaaggagtgaacaaatgaacacaattctagcttgctaatatgccctgagct | |||||
| **************************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000017952 ENSRNOG00000013437 0610012H03Rik | |||||
| rat | (((((((.((((.((((..((.((((((((((((...(((..((((((.((((......)))))))))))))....)))))))).))))))..))))....))))))))))) | 1.000 -38.70 | ||||
| rat | chromosome:3:90734065:90734176:1 | Same_strand|Intronic_coding|ENSRNOT00000017952|ENSRNOG00000013437 ## ENSRNOG00000013437|protein_coding|0610012H03Rik|RIKEN cDNA 0610012H03 gene Gene [Source:MGI Symbol;Acc:MGI:1921338] |
block2261191 [novel_lenNOK_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.32/0.39 | 18/19/0.00 | 1.5 | 1.0 | 2 | 0 | 2 | 0 | 2 | 31 | 5arm | 1 | nd | 0.16 | 1 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---UUUCUGG--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------CUGGACU------------------------------------------------------------------------------------------------------ | 1 | miR-378 | |
| len | cloning frequencies | |||
| T3S2 | T4S1 | |||
| --TTTTCTGGACTTATGTAAG---------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| -----TCTGGACTTATGTAAGAG-------------------------------------------------------------------------------------------- | 18 | 1 | - | |
| rat | gaTTTTCTGGACTTATGTAAGAGctgctttccggatggaaaacataactttctctataactatgagaagttattcacggaacaacttgagcatccttgataggtcctggaagtcc | |||
| ******************************************************************************************************************* | ||||
| rat | (((((((.((((((((.((((...(((((((((....((....(((((.(((((.........)))))))))))).)))).......)))))..)))))))))))).))))))). | 0.930 -35.31 | ||
| rat | chromosome:7:128197693:128197807:1 | intergenic |
block2377331 [novel_lenNOK_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.63/0.67 | 18/19/0.00 | 1.5 | 1.0 | 2 | 0 | 2 | 0 | 2 | 31 | 3arm | 1 | nd | 0.26 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------------------AUGCCGA--------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------------------------------CCGAAGC------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------------GATGCCGAAGCACAGCCTC---- | 19 | - | 1 | |
| -------------------------------------------------------------------------------------------------GCCGAAGCACAGCCTCTG-- | 18 | 1 | - | |
| rat | ggcgggggcggggctggaggcatgtggggcaggggcgtagctggaatctagagggcattgtccaatccactgacagaaccagacccctgctcaaGATGCCGAAGCACAGCCTCTGtc | |||
| ********************************************************************************************************************* | ||||
| ------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000043669 ENSRNOG00000022515 RGD1564835_predicted | |||
| rat | (((((((((...(((...(((((...(((((((((.....((((..(((..((((.(((....))))).))...))).)))).)))))))))...)))))..)))...))))))))) | 0.420 -55.40 | ||
| rat | chromosome:8:11902320:11902436:1 | Opposite_strand|Intronic_coding|ENSRNOT00000043669|ENSRNOG00000022515 ## ENSRNOG00000022515|protein_coding|RGD1564835_predicted| |
block996233 [novel_lenNOK_shortStem_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.36/0.42 | 19/26/0.67 | 3.0 | 3.2 | 9 | 0 | 1 | 0 | 4 | 17 | 5arm | 1 | nd | 0.15 | 2 | 9 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------CUACUUC----------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | --------------ACUUCUG--------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | -----AUCUCUU------------------------------------------------------------------------------------------------------------ | 2 | novel |
| seed | -----------UCUACUU------------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------TACTTCTGAGTGTTGACACTTG------------------------------------------------------------------------------------- | 22 | 3 | |
| -----------TCTACTTCTGAGTGTTGAC------------------------------------------------------------------------------------------ | 19 | 2 | |
| -----------TCTACTTCTGAGTGTTGACACTTG------------------------------------------------------------------------------------- | 24 | 1 | |
| ----TATCTCTTCTACTTCTGAGTGTTGAC------------------------------------------------------------------------------------------ | 26 | 1 | |
| ----TATCTCTTCTACTTCTGAGTGT---------------------------------------------------------------------------------------------- | 22 | 1 | |
| ----------TTCTACTTCTGAGTGTTGAC------------------------------------------------------------------------------------------ | 20 | 1 | |
| rat | actcTATCTCTTCTACTTCTGAGTGTTGACACTTGctaagatgcgtgtgaacaatacccaagttccatgtatccatccttgtgtctccatcctcctggaaggcaagaagagttgttagtg | ||
| ************************************************************************************************************************ | |||
| rat | (((....(((((((.((((((((((..(((((.......((((((((.((((.........)))))))))))).......)))))..))..)))..)))))...))))))).....))). | 0.990 -37.44 |
| rat | chromosome:1:124853157:124853276:1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31047 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.