other hairpins
novel_5varHIGH_loopOverlap_randfoldOK (6 loci)
novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (6 loci)
block532451 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.332 | no | no | 0.50/0.56 | 18/24/0.75 | 6.5 | 4.8 | 4 | 0 | 3 | 0 | 13 | -7 | 3arm | 33 | nd | 0.42 | 4 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------GGUAUAG----------------------------------- | 1 | novel | ||
| seed | -------------------------------------------UAGCAUU------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------UGUUCCA------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------UUCCACA----------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| ------------------------------------------ATAGCATTGTTCCACAGGGACCCA--------------- | 24 | - | - | 1 | |
| --------------------------------------------------GTTCCACAGGGACCCAAA------------- | 18 | 1 | - | - | |
| --------------------------------------GGGTATAGCATTGTTCCACAGGG-------------------- | 23 | - | - | 1 | |
| ------------------------------------------------TTGTTCCACAGGGACCCAAA------------- | 20 | - | 1 | - | |
| rat | ccactattgaagagatgggttaagtcagtgcaagtagaGGGTATAGCATTGTTCCACAGGGACCCAAAacaagtaatatgg | ||||
| ********************************************************************************* | |||||
| rat | (((.(((((......((((((..((((((((..............))))))....))...)))))).......)))))))) | 0.910 -16.06 | |||
| rat | chromosome:16:35506755:35506835:-1 | intergenic |
block966987 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.369 | no | no | 0.50/0.55 | 20/22/1.00 | 1.3 | 2.0 | 3 | 0 | 2 | 0 | 24 | -1 | 3arm | 24 | nd | 0.45 | 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------UGCCAGU-------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------AUCAUGC------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S1 | |||
| ---------------------------------------------------------------ATGCCAGTGCAGAAGCAGACTC------------------------ | 22 | - | 2 | |
| -----------------------------------------------------------AATCATGCCAGTGCAGAAGC------------------------------ | 20 | 1 | - | |
| rat | ggactctgagattattaaggctttttcctgggtgtatctctgaaggatgatgttctgaaAATCATGCCAGTGCAGAAGCAGACTCgggctggccagcggaccaggttca | |||
| ************************************************************************************************************* | ||||
| rat | ((((.(((..........((((....(((((((.....((((..(((((((.........))))).))....)))).....)))))))..)))).......))))))). | 0.510 -28.63 | ||
| rat | chromosome:1:55888395:55888503:1 | intergenic |
block1033423 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.588 | no | no | 0.45/0.63 | 19/23/0.80 | 0.5 0.0 1.5 | 0.5 0.0 0.5 | 2 1 2 | 0 0 0 | 2 1 2 | 0 0 0 | 29 20 10 | -11 -2 8 | 3arm_loop 3arm_loop 3arm | 14 14 16 | 6 15 25 | 0.59 0.43 0.48 | 9 4 5 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------CCCCCAA---------------------- | 1 | novel | |||
| seed | -------------------------------------------------AUGAACA----------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------AGGCCCC------------------------- | 1 | novel | |||
| seed | ----------------------------------------AUGCCUG-------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------UGCCUGA------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T3S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------GATGCCTGAGATGAACATCAAG------------------------------ | 22 | - | - | - | 1 | |
| ----------------------------------------------------------AAGGCCCCCAAGATCTCCATGCC---------- | 23 | 1 | - | - | - | |
| ------------------------------------------------GATGAACATCAAGGCCCCCAAGA-------------------- | 23 | - | 1 | - | - | |
| -------------------------------------------------------------GCCCCCAAGATCTCCATGC----------- | 19 | - | 1 | - | - | |
| ----------------------------------------ATGCCTGAGATGAACATCAAGG----------------------------- | 22 | - | - | 1 | - | |
| rat | tgaaggtccagatgcaaaactgaagggtcctaagttcaaGATGCCTGAGATGAACATCAAGGCCCCCAAGATCTCCATGCCggatttacat | |||||
| ******************************************************************************************* | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000027322 ENSRNOG00000020192 Q38PG1_RAT | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000047538 ENSRNOG00000020192 Q38PG1_RAT | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000027330 ENSRNOG00000020192 Q38PG1_RAT | |||||
| rat | ((.((((((..(((.....((...(((.(((..(((((............)))))....))))))...)).....)))...)))))).)). | 0.610 -16.60 | ||||
| rat | chromosome:1:211688013:211688103:1 | Same_strand|Boundary_non-coding|ENSRNOT00000041586|ENSRNOG00000020192 ## Same_strand|Intronic_coding|ENSRNOT00000047538|ENSRNOG00000020192 ## Same_strand|Intronic_non-coding|ENSRNOT00000027330|ENSRNOG00000020192 ## ENSRNOG00000020192|protein_coding|Q38PG1_RAT|AHNAK 1 (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q38PG1] ## {Repeats: trf 181 223 0 class=trf} |
block2346160 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.289 | no | no | 0.61/0.68 | 22/23/1.00 | 3.5 | 3.0 | 2 | 0 | 2 | 0 | 13 | -1 | 3arm | 11 | nd | 0.36 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------UGGCAGC--------------------------- | 1 | novel | |
| seed | --------------------------------------------------------CGCAAGA---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| -------------------------------------------------------ACGCAAGATGGCAGCCACCACAG------------------- | 23 | - | 1 | |
| --------------------------------------------------------------ATGGCAGCCACCACAGGCTCGG------------- | 22 | 1 | - | |
| rat | ggactgaagtctgttgaattaaaaattgcagggggccggccttcgagcgacagggACGCAAGATGGCAGCCACCACAGGCTCGGgagtaaaagtccc | |||
| ************************************************************************************************* | ||||
| ...................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000051782 ENSRNOG00000032982 | |||
| rat | (((((.....((.((((..........((..(((((..(((.((..(((.......)))..)).))).))).))....)))))).))....))))). | 0.660 -29.60 | ||
| rat | chromosome:8:101473804:101473900:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000051782|ENSRNOG00000032982 ## ENSRNOG00000032982|pseudogene|| |
block1945605 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.692 | no | no | 0.47/0.63 | 19/22/0.71 | 0.0 1.5 1.2 | 0.0 1.0 1.5 | 1 2 4 | 0 0 0 | 1 2 4 | 0 0 0 | 22 13 5 | -18 -9 -1 | 3arm_loop 3arm_loop 3arm | 11 22 22 | nd nd nd | 0.77 0.47 0.33 | 17 5 4 | 7 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------GUCUCUC------------------ | 2 | novel | ||||||
| seed | -----------------------------------------------GCCUUAC--------------------------- | 1 | novel | ||||||
| seed | --------------------------------------CUUCCAG------------------------------------ | 1 | novel | ||||||
| seed | --------------------------------------------------UUACAAG------------------------ | 1 | novel | ||||||
| seed | ----------------------------------------------------------CUCUCCA---------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------AGUCUCU------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------------------------AGTCTCTCCAGTCGCAGCCTC----- | 21 | 1 | - | - | - | 1 | - | - | |
| ------------------------------------------------------AAGTCTCTCCAGTCGCAGCC------- | 20 | - | 1 | - | - | - | - | - | |
| -------------------------------------ACTTCCAGCCGCCTTACAAGTC---------------------- | 22 | - | - | - | 1 | - | - | - | |
| -------------------------------------------------CTTACAAGTCTCTCCAGTC------------- | 19 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------CGCCTTACAAGTCTCTCCAG--------------- | 20 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------TCTCTCCAGTCGCAGCCTC----- | 19 | - | - | 1 | - | - | - | - | |
| rat | tttggacggaacagacccggggactaccactttattcACTTCCAGCCGCCTTACAAGTCTCTCCAGTCGCAGCCTCcggga | ||||||||
| ********************************************************************************* | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010824 ENSRNOG00000008008 Garnl1 | ||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010684 ENSRNOG00000008008 Garnl1 | ||||||||
| rat | ((((((.((....(((..(((((((..............................)))))))...)))....)))))))). | 0.950 -16.71 | |||||||
| rat | chromosome:6:76153784:76153864:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000010684|ENSRNOG00000008008 ## Same_strand|Intronic_coding|ENSRNOT00000010824|ENSRNOG00000008008 ## ENSRNOG00000008008|protein_coding|Garnl1|GTPase-activating RapGAP domain-like 1 (GAP-related-interacting partner to E12) (GRIPE) (Tuberin-like protein 1). [Source:UniProtKB/Swiss-Prot;Acc:O55007] |
block987813 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.760 | no | no | 0.47/0.63 | 19/22/0.71 | 0.0 1.5 1.2 | 0.0 1.0 1.5 | 1 2 4 | 0 0 0 | 1 2 4 | 0 0 0 | 22 13 5 | -18 -9 -1 | 3arm_loop 3arm_loop 3arm | 11 22 22 | nd nd nd | 0.77 0.47 0.33 | 17 5 4 | 7 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------GUCUCUC------------------ | 2 | novel | ||||||
| seed | -----------------------------------------------GCCUUAC--------------------------- | 1 | novel | ||||||
| seed | --------------------------------------CUUCCAG------------------------------------ | 1 | novel | ||||||
| seed | --------------------------------------------------UUACAAG------------------------ | 1 | novel | ||||||
| seed | ----------------------------------------------------------CUCUCCA---------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------AGUCUCU------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------------------------AGTCTCTCCAGTCGCAGCCTC----- | 21 | 1 | - | - | - | 1 | - | - | |
| ------------------------------------------------------AAGTCTCTCCAGTCGCAGCC------- | 20 | - | 1 | - | - | - | - | - | |
| -------------------------------------ACTTCCAGCCGCCTTACAAGTC---------------------- | 22 | - | - | - | 1 | - | - | - | |
| -------------------------------------------------CTTACAAGTCTCTCCAGTC------------- | 19 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------CGCCTTACAAGTCTCTCCAG--------------- | 20 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------TCTCTCCAGTCGCAGCCTC----- | 19 | - | - | 1 | - | - | - | - | |
| rat | tttggacggaacagacccggggactcccactttattcACTTCCAGCCGCCTTACAAGTCTCTCCAGTCGCAGCCTCcggga | ||||||||
| ********************************************************************************* | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000021365 ENSRNOG00000015960 | ||||||||
| rat | ((((((.((....(((..(((((((..............................)))))))...)))....)))))))). | 0.910 -16.41 | |||||||
| rat | chromosome:1:101125258:101125338:1 | Same_strand|Intronic_coding|ENSRNOT00000021365|ENSRNOG00000015960 ## ENSRNOG00000015960|protein_coding|| |
novel_Multihit_shortStem_loopOverlap_randfoldOK_nonpairedHIGH (6 loci)
block960345 [novel_Multihit_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | -4 | 3arm_loop | 16 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------CUAAACU------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------CCTAAACTTCCACTGTTGGA | 20 | 1 | |
| rat | cttgcactggaagttactatcCCTAAACTTCCACTGTTGGA | ||
| ***************************************** | |||
| rat | ((.(((.((((((((..........)))))))).))).)). | 1.000 -12.30 |
| rat | chromosome:1:49162051:49162091:1 | intergenic |
block1961735 [novel_Multihit_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.64/0.64 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -4 | 3arm_loop | 16 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------CACUCCU------------------ | 1 | miR-483 |
| len | cloning frequencies | ||
| T2S2 | |||
| ---------------------------CCACTCCTCAGGCTTCCCCATC---- | 22 | 1 | |
| rat | ggctgctgggggccttcaggacttataCCACTCCTCAGGCTTCCCCATCacca | ||
| ***************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033506 ENSRNOG00000027723 | ||
| rat | ((.((.(((((((((..((((..........)))).))))..))))).)))). | 1.000 -20.50 |
| rat | chromosome:6:103528502:103528554:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000048112|ENSRNOG00000027723 ## Same_strand|Intronic_coding|ENSRNOT00000033506|ENSRNOG00000027723 ## ENSRNOG00000027723|protein_coding|| |
block1961738 [novel_Multihit_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.64/0.64 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -4 | 3arm_loop | 16 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------CACUCCU------------------ | 1 | miR-483 |
| len | cloning frequencies | ||
| T2S2 | |||
| ---------------------------CCACTCCTCAGGCTTCCCCATC---- | 22 | 1 | |
| rat | ggctgctgggggccttcaggacttataCCACTCCTCAGGCTTCCCCATCacca | ||
| ***************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033506 ENSRNOG00000027723 | ||
| rat | ((.((.(((((((((..((((..........)))).))))..))))).)))). | 1.000 -20.50 |
| rat | chromosome:6:103535537:103535589:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000048112|ENSRNOG00000027723 ## Same_strand|Intronic_coding|ENSRNOT00000033506|ENSRNOG00000027723 ## ENSRNOG00000027723|protein_coding|| |
block1961792 [novel_Multihit_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.64/0.64 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -4 | 3arm_loop | 16 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------CACUCCU------------------ | 1 | miR-483 |
| len | cloning frequencies | ||
| T2S2 | |||
| ---------------------------CCACTCCTCAGGCTTCCCCATC---- | 22 | 1 | |
| rat | ggctgctgggggccttcaggacttataCCACTCCTCAGGCTTCCCCATCacca | ||
| ***************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033506 ENSRNOG00000027723 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000051327 ENSRNOG00000027723 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000050602 ENSRNOG00000027723 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048112 ENSRNOG00000027723 | ||
| rat | ((.((.(((((((((..((((..........)))).))))..))))).)))). | 1.000 -20.50 |
| rat | chromosome:6:103642046:103642098:-1 | Same_strand|Intronic_coding|ENSRNOT00000051327|ENSRNOG00000027723 ## ENSRNOG00000027723|protein_coding|| |
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