other hairpins
novel_Multihit_shortStem_loopOverlap_randfoldOK_nonpairedHIGH (6 loci)
block1961950 [novel_Multihit_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.64/0.64 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -4 | 3arm_loop | 16 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------CACUCCU------------------ | 1 | miR-483 |
| len | cloning frequencies | ||
| T2S2 | |||
| ---------------------------CCACTCCTCAGGCTTCCCCATC---- | 22 | 1 | |
| rat | ggctgctgggggccttcaggacttataCCACTCCTCAGGCTTCCCCATCacca | ||
| ***************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048486 ENSRNOG00000031145 | ||
| rat | ((.((.(((((((((..((((..........)))).))))..))))).)))). | 1.000 -20.50 |
| rat | chromosome:6:104011330:104011382:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000040693|ENSRNOG00000031145 ## Same_strand|Intronic_coding|ENSRNOT00000048486|ENSRNOG00000031145 ## ENSRNOG00000031145|protein_coding|| |
block1961990 [novel_Multihit_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.64/0.64 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -4 | 3arm_loop | 16 | nd | 0.36 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------CACUCCU------------------ | 1 | miR-483 |
| len | cloning frequencies | ||
| T2S2 | |||
| ---------------------------CCACTCCTCAGGCTTCCCCATC---- | 22 | 1 | |
| rat | ggctgctggggcccttcaggacttataCCACTCCTCAGGCTTCCCCATCacca | ||
| ***************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048486 ENSRNOG00000031145 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048643 ENSRNOG00000032248 LOC678786 | ||
| rat | ((.((.(((((.(((..((((..........)))).)))...))))).)))). | 1.000 -17.20 |
| rat | chromosome:6:104108391:104108443:-1 | Same_strand|Intronic_coding|ENSRNOT00000048643|ENSRNOG00000032248 ## Same_strand|Boundary_non-coding|ENSRNOT00000040693|ENSRNOG00000031145 ## ENSRNOG00000032248|protein_coding|LOC678786| ## ENSRNOG00000031145|protein_coding|| |
novel_cloningHIGH_multiarm_DicerNOK_Multihit (6 loci)
sblock1468 [novel_cloningHIGH_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.223 | no | no | 0.32/0.53 | 18/21/0.92 | 0.0 0.0 | 0.0 0.0 | 41 1 | 0 0 | 5 1 | 0 0 | 33 36 | 1 0 | 5arm 3arm | 18 21 | nd nd | 0.15 0.32 | 3 4 | 52 | 5 | -1 | -7 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------GAGCCUG------------------------------------------------------------------------ | 50 | novel | ||||
| seed | -----------------------------------------------------------UGCUGUU----------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------AGCCUGU----------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| ---------------------------------TGAGCCTGTGTTGTGAAGCA------------------------------------------------------------ | 20 | 1 | 1 | 2 | 41 | 2 | |
| ----------------------------------------------------------TTGCTGTTACATTAAGCAA------------------------------------ | 19 | - | 1 | - | - | - | |
| ---------------------------------TGAGCCTGTGTTGTGAAGCAA----------------------------------------------------------- | 21 | - | - | - | 1 | - | |
| ----------------------------------GAGCCTGTGTTGTGAAGCA------------------------------------------------------------ | 19 | - | - | - | 1 | - | |
| ---------------------------------TGAGCCTGTGTTGTGAAG-------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| ---------------------------------TGAGCCTGTGTTGTGAAGC------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| rat | gtagagaatgggaccgtaactggacaaagctgcTGAGCCTGTGTTGTGAAGCAattccttgctgttacattaagcaataggatgccatgttctggttatacctttttgatgca | ||||||
| ***************************************************************************************************************** | |||||||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | (((..(((.(((...(((((..((((..((.......(((((((((((((((((....))))).)))))....))).))))..))..)).))..))))).))).)))..))). | 0.780 -29.40 | |||||
| rat | chromosome:1:51536730:51536842:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1534 [novel_cloningHIGH_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.536 | no | no | 0.32/0.53 | 18/21/0.92 | 0.0 0.0 | 0.0 0.0 | 41 1 | 0 0 | 5 1 | 0 0 | 40 36 | 1 0 | 5arm 3arm | 18 21 | nd nd | 0.15 0.32 | 3 4 | 52 | 5 | -1 | -7 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------GAGCCUG------------------------------------------------------------------------ | 50 | novel | ||||
| seed | ------------------------------------------AGCCUGU----------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------UGCUGUU----------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------TGAGCCTGTGTTGTGAAGCA------------------------------------------------------------ | 20 | 1 | 1 | 2 | 41 | 2 | |
| -----------------------------------------------------------------TTGCTGTTACATTAAGCAA------------------------------------ | 19 | - | 1 | - | - | - | |
| -----------------------------------------GAGCCTGTGTTGTGAAGCA------------------------------------------------------------ | 19 | - | - | - | 1 | - | |
| ----------------------------------------TGAGCCTGTGTTGTGAAG-------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| ----------------------------------------TGAGCCTGTGTTGTGAAGC------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| ----------------------------------------TGAGCCTGTGTTGTGAAGCAA----------------------------------------------------------- | 21 | - | - | - | 1 | - | |
| rat | agcaaggatagagaatgggaccgtaactggacaaagctgcTGAGCCTGTGTTGTGAAGCAattccttgctgttacattaagcaataggatgccatgttctggttatacctttttgatgca | ||||||
| ************************************************************************************************************************ | |||||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | .(((......(((((.((....(((((..((((..((.......(((((((((((((((((....))))).)))))....))).))))..))..)).))..))))).)))))))..))). | 0.500 -27.80 | |||||
| rat | chromosome:1:51819585:51819704:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_coding|ENSRNOT00000048246|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1583 [novel_cloningHIGH_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.209 | no | no | 0.32/0.53 | 18/21/0.92 | 0.0 0.0 | 0.0 0.0 | 41 1 | 0 0 | 5 1 | 0 0 | 12 16 | 1 0 | 5arm 3arm | 18 21 | nd nd | 0.15 0.32 | 3 4 | 52 | 5 | -1 | -7 |
| reads | miRBase family seed | ||||||
| seed | -------------GAGCCUG---------------------------------------------------- | 50 | novel | ||||
| seed | --------------------------------------UGCUGUU--------------------------- | 1 | novel | ||||
| seed | --------------AGCCUGU--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| ------------TGAGCCTGTGTTGTGAAGCA---------------------------------------- | 20 | 1 | 1 | 2 | 41 | 2 | |
| -------------------------------------TTGCTGTTACATTAAGCAA---------------- | 19 | - | 1 | - | - | - | |
| ------------TGAGCCTGTGTTGTGAAGCAA--------------------------------------- | 21 | - | - | - | 1 | - | |
| -------------GAGCCTGTGTTGTGAAGCA---------------------------------------- | 19 | - | - | - | 1 | - | |
| ------------TGAGCCTGTGTTGTGAAGC----------------------------------------- | 19 | - | - | - | 1 | - | |
| ------------TGAGCCTGTGTTGTGAAG------------------------------------------ | 18 | - | - | - | 1 | - | |
| rat | ggacaaagctgcTGAGCCTGTGTTGTGAAGCAattccttgctgttacattaagcaataggatgccatgttct | ||||||
| ************************************************************************ | |||||||
| ---------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | (((((..((.......(((((((((((((((((....))))).)))))....))).))))..))..))))). | 0.760 -17.60 | |||||
| rat | chromosome:1:52044313:52044384:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1698 [novel_cloningHIGH_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.223 | no | no | 0.32/0.53 | 18/21/0.92 | 0.0 0.0 | 0.0 0.0 | 41 1 | 0 0 | 5 1 | 0 0 | 33 36 | 1 0 | 5arm 3arm | 18 21 | nd nd | 0.15 0.32 | 3 4 | 52 | 5 | -1 | -7 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------GAGCCUG------------------------------------------------------------------------ | 50 | novel | ||||
| seed | -----------------------------------------------------------UGCUGUU----------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------AGCCUGU----------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| ---------------------------------TGAGCCTGTGTTGTGAAGCA------------------------------------------------------------ | 20 | 1 | 1 | 2 | 41 | 2 | |
| ----------------------------------------------------------TTGCTGTTACATTAAGCAA------------------------------------ | 19 | - | 1 | - | - | - | |
| ---------------------------------TGAGCCTGTGTTGTGAAGCAA----------------------------------------------------------- | 21 | - | - | - | 1 | - | |
| ----------------------------------GAGCCTGTGTTGTGAAGCA------------------------------------------------------------ | 19 | - | - | - | 1 | - | |
| ---------------------------------TGAGCCTGTGTTGTGAAG-------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| ---------------------------------TGAGCCTGTGTTGTGAAGC------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| rat | gtagagaatgggaccgtaactggacaaagctgcTGAGCCTGTGTTGTGAAGCAattccttgctgttacattaagcaataggatgccatgttctggttatacctttttgatgca | ||||||
| ***************************************************************************************************************** | |||||||
| rat | (((..(((.(((...(((((..((((..((.......(((((((((((((((((....))))).)))))....))).))))..))..)).))..))))).))).)))..))). | 0.780 -29.40 | |||||
| rat | chromosome:1:52860279:52860391:1 | intergenic |
sblock301 [novel_cloningHIGH_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.135 | no | no | 0.32/0.53 | 18/21/0.92 | 0.0 0.0 | 0.0 0.0 | 41 1 | 0 0 | 5 1 | 0 0 | 19 22 | 1 0 | 5arm 3arm | 18 21 | nd nd | 0.15 0.32 | 3 4 | 52 | 5 | -1 | -7 |
| reads | miRBase family seed | ||||||
| seed | --------------------GAGCCUG---------------------------------------------------------- | 50 | novel | ||||
| seed | ---------------------------------------------UGCUGUU--------------------------------- | 1 | novel | ||||
| seed | ---------------------AGCCUGU--------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------TGAGCCTGTGTTGTGAAGCA---------------------------------------------- | 20 | 1 | 1 | 2 | 41 | 2 | |
| -------------------TGAGCCTGTGTTGTGAAGCAA--------------------------------------------- | 21 | - | - | - | 1 | - | |
| --------------------GAGCCTGTGTTGTGAAGCA---------------------------------------------- | 19 | - | - | - | 1 | - | |
| -------------------TGAGCCTGTGTTGTGAAGC----------------------------------------------- | 19 | - | - | - | 1 | - | |
| -------------------TGAGCCTGTGTTGTGAAG------------------------------------------------ | 18 | - | - | - | 1 | - | |
| --------------------------------------------TTGCTGTTACATTAAGCAA---------------------- | 19 | - | 1 | - | - | - | |
| rat | cgtaactggacaaagctgcTGAGCCTGTGTTGTGAAGCAattccttgctgttacattaagcaataggatgccatgttctggttat | ||||||
| ************************************************************************************* | |||||||
| ----------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||||||
| rat | .(((((..((((..((.......(((((((((((((((((....))))).)))))....))).))))..))..)).))..))))) | 0.790 -22.00 | |||||
| rat | chromosome:1:50293268:50293352:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock374 [novel_cloningHIGH_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.442 | no | no | 0.32/0.53 | 18/24/0.86 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.3 0.0 0.0 0.0 | 41 3 1 1 1 | 0 0 0 0 0 | 5 2 1 1 1 | 0 0 0 0 0 | 13 24 29 35 22 | 8 -2 -7 -18 2 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 21 | nd nd nd nd nd | 0.15 0.39 0.53 0.42 0.32 | 3 5 5 5 4 | 57 | 6 | -1 | -7 |
| reads | miRBase family seed | |||||||
| seed | --------------GAGCCUG-------------------------------------------------------------------- | 50 | novel | |||||
| seed | -------------------------GUGAAGC--------------------------------------------------------- | 3 | novel | |||||
| seed | ------------------------------------CCUGUGU---------------------------------------------- | 1 | novel | |||||
| seed | ---------------AGCCUGU------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------GCAAUUC---------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------UGCUGUU--------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| -------------TGAGCCTGTGTTGTGAAGCA-------------------------------------------------------- | 20 | 1 | 1 | - | 2 | 41 | 2 | |
| ------------------------TGTGAAGCAATTCCTGTGT---------------------------------------------- | 19 | - | - | - | - | 2 | - | |
| -------------TGAGCCTGTGTTGTGAAGCAA------------------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| --------------GAGCCTGTGTTGTGAAGCA-------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ------------------------TGTGAAGCAATTCCTGTG----------------------------------------------- | 18 | - | - | 1 | - | - | - | |
| -------------TGAGCCTGTGTTGTGAAG---------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| -------------TGAGCCTGTGTTGTGAAGC--------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| -----------------------------AGCAATTCCTGTGTATAAC----------------------------------------- | 19 | 1 | - | - | - | - | - | |
| -----------------------------------TCCTGTGTATAACTTGCTGTTACA------------------------------ | 24 | - | - | - | - | 1 | - | |
| ------------------------------------------------TTGCTGTTACATTAAGCAA---------------------- | 19 | - | 1 | - | - | - | - | |
| rat | tggacaaagctgcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttgctgttacattaagcaataggatgccatgttctgtttat | |||||||
| ***************************************************************************************** | ||||||||
| rat | ((((((.(((.((....(((((((((((((((((.....((.....))))))).)))))....))).))))..))...))).)))))). | 0.640 -18.50 | ||||||
| rat | chromosome:1:50788377:50788465:-1 | intergenic |
novel_cloningHIGH_multiarm_DicerNOK_Multihit_shortStem (6 loci)
sblock1444 [novel_cloningHIGH_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.557 | no | no | 0.32/0.53 | 18/24/0.86 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.3 0.0 0.0 0.0 | 41 3 1 1 1 | 0 0 0 0 0 | 5 2 1 1 1 | 0 0 0 0 0 | 2 13 18 24 8 | 8 -2 -7 -18 2 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 21 | nd nd nd nd nd | 0.15 0.39 0.53 0.42 0.32 | 3 5 5 5 4 | 57 | 6 | -1 | -7 |
| reads | miRBase family seed | |||||||
| seed | ---GAGCCUG------------------------------------------------------ | 50 | novel | |||||
| seed | --------------GUGAAGC------------------------------------------- | 3 | novel | |||||
| seed | --------------------------------------UGCUGUU------------------- | 1 | novel | |||||
| seed | ----AGCCUGU----------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------CCUGUGU-------------------------------- | 1 | novel | |||||
| seed | -------------------GCAAUUC-------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| --TGAGCCTGTGTTGTGAAGCA------------------------------------------ | 20 | 1 | 1 | - | 2 | 41 | 2 | |
| -------------TGTGAAGCAATTCCTGTGT-------------------------------- | 19 | - | - | - | - | 2 | - | |
| ------------------------TCCTGTGTATAACTTGCTGTTACA---------------- | 24 | - | - | - | - | 1 | - | |
| -------------TGTGAAGCAATTCCTGTG--------------------------------- | 18 | - | - | 1 | - | - | - | |
| --TGAGCCTGTGTTGTGAAG-------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ------------------AGCAATTCCTGTGTATAAC--------------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------------------------TTGCTGTTACATTAAGCAA-------- | 19 | - | 1 | - | - | - | - | |
| --TGAGCCTGTGTTGTGAAGC------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| --TGAGCCTGTGTTGTGAAGCAA----------------------------------------- | 21 | - | - | - | - | 1 | - | |
| ---GAGCCTGTGTTGTGAAGCA------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| rat | gcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttgctgttacattaagcaataggatgc | |||||||
| **************************************************************** | ||||||||
| rat | ((....(((((((((((((((((.....((.....))))))).)))))....))).))))..)) | 0.640 -11.90 | ||||||
| rat | chromosome:1:51422033:51422096:1 | intergenic |
sblock1513 [novel_cloningHIGH_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.557 | no | no | 0.32/0.53 | 18/24/0.86 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.3 0.0 0.0 0.0 | 41 3 1 1 1 | 0 0 0 0 0 | 5 2 1 1 1 | 0 0 0 0 0 | 2 13 18 24 8 | 8 -2 -7 -18 2 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 21 | nd nd nd nd nd | 0.15 0.39 0.53 0.42 0.32 | 3 5 5 5 4 | 57 | 6 | -1 | -7 |
| reads | miRBase family seed | |||||||
| seed | ---GAGCCUG------------------------------------------------------ | 50 | novel | |||||
| seed | --------------GUGAAGC------------------------------------------- | 3 | novel | |||||
| seed | --------------------------------------UGCUGUU------------------- | 1 | novel | |||||
| seed | ----AGCCUGU----------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------CCUGUGU-------------------------------- | 1 | novel | |||||
| seed | -------------------GCAAUUC-------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| --TGAGCCTGTGTTGTGAAGCA------------------------------------------ | 20 | 1 | 1 | - | 2 | 41 | 2 | |
| -------------TGTGAAGCAATTCCTGTGT-------------------------------- | 19 | - | - | - | - | 2 | - | |
| ------------------------TCCTGTGTATAACTTGCTGTTACA---------------- | 24 | - | - | - | - | 1 | - | |
| -------------TGTGAAGCAATTCCTGTG--------------------------------- | 18 | - | - | 1 | - | - | - | |
| --TGAGCCTGTGTTGTGAAG-------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ------------------AGCAATTCCTGTGTATAAC--------------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------------------------TTGCTGTTACATTAAGCAA-------- | 19 | - | 1 | - | - | - | - | |
| --TGAGCCTGTGTTGTGAAGC------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| --TGAGCCTGTGTTGTGAAGCAA----------------------------------------- | 21 | - | - | - | - | 1 | - | |
| ---GAGCCTGTGTTGTGAAGCA------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| rat | gcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttgctgttacattaagcaataggatgc | |||||||
| **************************************************************** | ||||||||
| -------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | |||||||
| rat | ((....(((((((((((((((((.....((.....))))))).)))))....))).))))..)) | 0.640 -11.90 | ||||||
| rat | chromosome:1:51652069:51652132:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
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