other hairpins
novel_cloningHIGH_multiarm_DicerNOK_Multihit_shortStem (6 loci)
sblock1566 [novel_cloningHIGH_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.557 | no | no | 0.32/0.53 | 18/24/0.86 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.3 0.0 0.0 0.0 | 41 3 1 1 1 | 0 0 0 0 0 | 5 2 1 1 1 | 0 0 0 0 0 | 2 13 18 24 8 | 8 -2 -7 -18 2 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 21 | nd nd nd nd nd | 0.15 0.39 0.53 0.42 0.32 | 3 5 5 5 4 | 57 | 6 | -1 | -7 |
| reads | miRBase family seed | |||||||
| seed | ---GAGCCUG------------------------------------------------------ | 50 | novel | |||||
| seed | --------------GUGAAGC------------------------------------------- | 3 | novel | |||||
| seed | --------------------------------------UGCUGUU------------------- | 1 | novel | |||||
| seed | ----AGCCUGU----------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------CCUGUGU-------------------------------- | 1 | novel | |||||
| seed | -------------------GCAAUUC-------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| --TGAGCCTGTGTTGTGAAGCA------------------------------------------ | 20 | 1 | 1 | - | 2 | 41 | 2 | |
| -------------TGTGAAGCAATTCCTGTGT-------------------------------- | 19 | - | - | - | - | 2 | - | |
| ------------------------TCCTGTGTATAACTTGCTGTTACA---------------- | 24 | - | - | - | - | 1 | - | |
| -------------TGTGAAGCAATTCCTGTG--------------------------------- | 18 | - | - | 1 | - | - | - | |
| --TGAGCCTGTGTTGTGAAG-------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ------------------AGCAATTCCTGTGTATAAC--------------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------------------------TTGCTGTTACATTAAGCAA-------- | 19 | - | 1 | - | - | - | - | |
| --TGAGCCTGTGTTGTGAAGC------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| --TGAGCCTGTGTTGTGAAGCAA----------------------------------------- | 21 | - | - | - | - | 1 | - | |
| ---GAGCCTGTGTTGTGAAGCA------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| rat | gcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttgctgttacattaagcaataggatgc | |||||||
| **************************************************************** | ||||||||
| -------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||||||
| rat | ((....(((((((((((((((((.....((.....))))))).)))))....))).))))..)) | 0.640 -11.90 | ||||||
| rat | chromosome:1:51999929:51999992:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1675 [novel_cloningHIGH_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.557 | no | no | 0.32/0.53 | 18/24/0.86 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.3 0.0 0.0 0.0 | 41 3 1 1 1 | 0 0 0 0 0 | 5 2 1 1 1 | 0 0 0 0 0 | 2 13 18 24 8 | 8 -2 -7 -18 2 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 21 | nd nd nd nd nd | 0.15 0.39 0.53 0.42 0.32 | 3 5 5 5 4 | 57 | 6 | -1 | -7 |
| reads | miRBase family seed | |||||||
| seed | ---GAGCCUG------------------------------------------------------ | 50 | novel | |||||
| seed | --------------GUGAAGC------------------------------------------- | 3 | novel | |||||
| seed | --------------------------------------UGCUGUU------------------- | 1 | novel | |||||
| seed | ----AGCCUGU----------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------CCUGUGU-------------------------------- | 1 | novel | |||||
| seed | -------------------GCAAUUC-------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| --TGAGCCTGTGTTGTGAAGCA------------------------------------------ | 20 | 1 | 1 | - | 2 | 41 | 2 | |
| -------------TGTGAAGCAATTCCTGTGT-------------------------------- | 19 | - | - | - | - | 2 | - | |
| ------------------------TCCTGTGTATAACTTGCTGTTACA---------------- | 24 | - | - | - | - | 1 | - | |
| -------------TGTGAAGCAATTCCTGTG--------------------------------- | 18 | - | - | 1 | - | - | - | |
| --TGAGCCTGTGTTGTGAAG-------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ------------------AGCAATTCCTGTGTATAAC--------------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------------------------TTGCTGTTACATTAAGCAA-------- | 19 | - | 1 | - | - | - | - | |
| --TGAGCCTGTGTTGTGAAGC------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| --TGAGCCTGTGTTGTGAAGCAA----------------------------------------- | 21 | - | - | - | - | 1 | - | |
| ---GAGCCTGTGTTGTGAAGCA------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| rat | gcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttgctgttacattaagcaataggatgc | |||||||
| **************************************************************** | ||||||||
| -------------------------------------------------------------------------- | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | |||||||
| rat | ((....(((((((((((((((((.....((.....))))))).)))))....))).))))..)) | 0.640 -11.90 | ||||||
| rat | chromosome:1:52816687:52816750:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
sblock273 [novel_cloningHIGH_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.557 | no | no | 0.32/0.53 | 18/24/0.86 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.3 0.0 0.0 0.0 | 41 3 1 1 1 | 0 0 0 0 0 | 5 2 1 1 1 | 0 0 0 0 0 | 2 13 18 24 8 | 8 -2 -7 -18 2 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 21 | nd nd nd nd nd | 0.15 0.39 0.53 0.42 0.32 | 3 5 5 5 4 | 57 | 6 | -1 | -7 |
| reads | miRBase family seed | |||||||
| seed | ---GAGCCUG------------------------------------------------------ | 50 | novel | |||||
| seed | --------------GUGAAGC------------------------------------------- | 3 | novel | |||||
| seed | --------------------------------------UGCUGUU------------------- | 1 | novel | |||||
| seed | ----AGCCUGU----------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------CCUGUGU-------------------------------- | 1 | novel | |||||
| seed | -------------------GCAAUUC-------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| --TGAGCCTGTGTTGTGAAGCA------------------------------------------ | 20 | 1 | 1 | - | 2 | 41 | 2 | |
| -------------TGTGAAGCAATTCCTGTGT-------------------------------- | 19 | - | - | - | - | 2 | - | |
| ------------------------TCCTGTGTATAACTTGCTGTTACA---------------- | 24 | - | - | - | - | 1 | - | |
| --TGAGCCTGTGTTGTGAAG-------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| -------------TGTGAAGCAATTCCTGTG--------------------------------- | 18 | - | - | 1 | - | - | - | |
| ------------------AGCAATTCCTGTGTATAAC--------------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------------------------TTGCTGTTACATTAAGCAA-------- | 19 | - | 1 | - | - | - | - | |
| --TGAGCCTGTGTTGTGAAGC------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| --TGAGCCTGTGTTGTGAAGCAA----------------------------------------- | 21 | - | - | - | - | 1 | - | |
| ---GAGCCTGTGTTGTGAAGCA------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| rat | gcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttgctgttacattaagcaataggatgc | |||||||
| **************************************************************** | ||||||||
| -------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | |||||||
| rat | ((....(((((((((((((((((.....((.....))))))).)))))....))).))))..)) | 0.640 -11.90 | ||||||
| rat | chromosome:1:50180495:50180558:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock469 [novel_cloningHIGH_multiarm_DicerNOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.557 | no | no | 0.32/0.53 | 18/24/0.86 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.3 0.0 0.0 0.0 | 41 3 1 1 1 | 0 0 0 0 0 | 5 2 1 1 1 | 0 0 0 0 0 | 2 13 18 24 8 | 8 -2 -7 -18 2 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 21 | nd nd nd nd nd | 0.15 0.39 0.53 0.42 0.32 | 3 5 5 5 4 | 57 | 6 | -1 | -7 |
| reads | miRBase family seed | |||||||
| seed | ---GAGCCUG------------------------------------------------------ | 50 | novel | |||||
| seed | --------------GUGAAGC------------------------------------------- | 3 | novel | |||||
| seed | --------------------------------------UGCUGUU------------------- | 1 | novel | |||||
| seed | ----AGCCUGU----------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------CCUGUGU-------------------------------- | 1 | novel | |||||
| seed | -------------------GCAAUUC-------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| --TGAGCCTGTGTTGTGAAGCA------------------------------------------ | 20 | 1 | 1 | - | 2 | 41 | 2 | |
| -------------TGTGAAGCAATTCCTGTGT-------------------------------- | 19 | - | - | - | - | 2 | - | |
| ------------------------TCCTGTGTATAACTTGCTGTTACA---------------- | 24 | - | - | - | - | 1 | - | |
| --TGAGCCTGTGTTGTGAAG-------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| -------------TGTGAAGCAATTCCTGTG--------------------------------- | 18 | - | - | 1 | - | - | - | |
| ------------------AGCAATTCCTGTGTATAAC--------------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------------------------TTGCTGTTACATTAAGCAA-------- | 19 | - | 1 | - | - | - | - | |
| --TGAGCCTGTGTTGTGAAGC------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| --TGAGCCTGTGTTGTGAAGCAA----------------------------------------- | 21 | - | - | - | - | 1 | - | |
| ---GAGCCTGTGTTGTGAAGCA------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| rat | gcTGAGCCTGTGTTGTGAAGCAattcctgtgtataacttgctgttacattaagcaataggatgc | |||||||
| **************************************************************** | ||||||||
| -------------------------------------------------------------------------- | ENSRNOT00000041486 ENSRNOG00000033456 LOC308198 | |||||||
| rat | ((....(((((((((((((((((.....((.....))))))).)))))....))).))))..)) | 0.640 -11.90 | ||||||
| rat | chromosome:1:52395388:52395451:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000044415|ENSRNOG00000033456 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041486|ENSRNOG00000033456 ## ENSRNOG00000033456|protein_coding|LOC308198| |
novel_cloningHIGH_multiarm_DicerNOK_loopOverlap (6 loci)
block1751037 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.327 | no | no | 0.32/0.64 | 18/26/0.77 | 2.5 0.0 0.8 0.9 | 6.5 0.0 1.8 2.1 | 4 34 8 8 | 0 0 0 0 | 2 5 5 2 | 0 0 0 0 | 0 17 22 8 | -3 -9 -21 -5 | 5arm_loop 5arm_loop 3arm_loop 3arm | 2 2 2 2 | nd nd nd nd | 0.26 0.67 0.57 0.33 | 3 10 11 3 | 69 | 7 | 0 | 15 |
| reads | miRBase family seed | ||||||||
| seed | ------------------GUCACAC----------------------------------------------- | 45 | novel | ||||||
| seed | ---------------------------------------AGAACUG-------------------------- | 5 | novel | ||||||
| seed | ---------------------------UCACAAU-------------------------------------- | 4 | novel | ||||||
| seed | -GCAAAAG---------------------------------------------------------------- | 3 | novel | ||||||
| seed | ----------------------------CACAAUG------------------------------------- | 3 | novel | ||||||
| seed | --------------------CACACAU--------------------------------------------- | 3 | novel | ||||||
| seed | ------------------------------------CUUAGAA----------------------------- | 2 | novel | ||||||
| seed | ---------------------ACACAUU-------------------------------------------- | 1 | novel | ||||||
| seed | -----------GCACACU------------------------------------------------------ | 1 | novel | ||||||
| seed | ----------------------------------------GAACUGG------------------------- | 1 | novel | ||||||
| seed | ------------------------------CAAUGUC----------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------TGTCACACATTCACAATGTCT---------------------------------- | 21 | 4 | - | - | 2 | 3 | 34 | 2 | |
| -------------------TCACACATTCACAATGTCT---------------------------------- | 19 | 1 | - | - | - | - | 2 | - | |
| --------------------------TTCACAATGTCTTAGAACTG-------------------------- | 20 | - | 1 | - | 1 | 1 | - | - | |
| --------------------------------------TAGAACTGGCAGGGCTGTC--------------- | 19 | - | - | - | - | - | 3 | - | |
| -----------------------------------TCTTAGAACTGGCAGGGCTGT---------------- | 21 | - | 1 | - | - | - | 1 | - | |
| ---------------------------TCACAATGTCTTAGAACT--------------------------- | 18 | - | - | - | - | - | 1 | - | |
| -----------------------------ACAATGTCTTAGAACTGGCAG---------------------- | 21 | - | - | - | - | - | 1 | - | |
| --------------------------------------TAGAACTGGCAGGGCTGT---------------- | 18 | - | - | - | - | - | 1 | - | |
| --------------------------------------TAGAACTGGCAGGGCTGTCGTCCCAC-------- | 26 | - | - | - | - | - | 1 | - | |
| ---------------------------------------AGAACTGGCAGGGCTGTCGTCCCAC-------- | 25 | - | - | - | - | - | 1 | - | |
| TGCAAAAGTGAGCACACTGTCACAC----------------------------------------------- | 25 | - | - | - | - | - | 1 | - | |
| --------------------CACACATTCACAATGTCTT--------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| --------------------------TTCACAATGTCTTAGAACT--------------------------- | 19 | - | - | - | 1 | - | - | - | |
| ----------AGCACACTGTCACACATTCACA---------------------------------------- | 22 | - | - | - | - | - | 1 | - | |
| TGCAAAAGTGAGCACACTGTCACACA---------------------------------------------- | 26 | - | - | - | - | - | 1 | - | |
| ---------------------------TCACAATGTCTTAGAACTGGCAG---------------------- | 23 | - | - | - | - | - | 1 | - | |
| TGCAAAAGTGAGCACACTG----------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | |
| ---------------------------TCACAATGTCTTAGAACTG-------------------------- | 19 | 1 | - | - | - | - | - | - | |
| rat | tgcaaaagtgagcacacTGTCACACATTCACAATGTCTtagaactggcagggctgtcgtcccacacttgcac | ||||||||
| ************************************************************************ | |||||||||
| rat | (((((..((((((...((((((....(((...........))).)))))).))).......)))..))))). | 0.440 -14.61 | |||||||
| rat | chromosome:5:79197720:79197791:-1 | intergenic |
block233506 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.313 | no | no | 0.37/0.67 | 18/24/0.78 | 0.0 0.0 0.0 3.0 | 0.0 0.0 0.0 0.0 | 1 26 5 2 | 0 0 0 0 | 1 4 1 1 | 0 0 0 0 | 20 34 28 18 | 3 -9 -3 3 | 5arm 3arm_loop 3arm_loop 3arm | 2 2 2 2 | nd nd nd nd | 0.32 0.60 0.35 0.21 | 3 8 2 1 | 78 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------GACACUU---------------------------------------------- | 56 | novel | |||
| seed | -----------------------------------------------------UCGUAUG---------------------------------------- | 6 | novel | |||
| seed | ------------------------------GUGCUCU--------------------------------------------------------------- | 3 | novel | |||
| seed | ------------------------------------------GACCUGA--------------------------------------------------- | 3 | novel | |||
| seed | -----------------------------------CUCUCCU---------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------AAGCUUG---------------------------- | 1 | novel | |||
| seed | ------------------------------------------------ACACUUC--------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------GAGAAGA---------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------UGACACU----------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------UCCUGAC------------------------------------------------------- | 1 | miR-378* | |||
| seed | ------------------------------------------------------CGUAUGA--------------------------------------- | 1 | novel | |||
| seed | ---------------------CCUGUCU------------------------------------------------------------------------ | 1 | novel | |||
| seed | ---------------------------------------------CUGACAC------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| ----------------------------------------------TGACACTTCGTATGAGAAGA---------------------------------- | 20 | 6 | - | - | 26 | |
| ----------------------------------------------TGACACTTCGTATGAGAAG----------------------------------- | 19 | - | - | 2 | 4 | |
| ----------------------------------------------TGACACTTCGTATGAGAAGAA--------------------------------- | 21 | - | - | - | 6 | |
| ----------------------------------------------------TTCGTATGAGAAGAAGCTTG---------------------------- | 20 | - | - | - | 5 | |
| ----------------------------------------------TGACACTTCGTATGAGAA------------------------------------ | 18 | - | - | - | 5 | |
| ----------------------------------------------TGACACTTCGTATGAGAAGAAGC------------------------------- | 23 | - | - | - | 5 | |
| -----------------------------TGTGCTCTCTCCTGACCTGACAC------------------------------------------------ | 23 | - | - | - | 2 | |
| -----------------------------------------TGACCTGACACTTCGTATGAGA------------------------------------- | 22 | - | - | - | 2 | |
| --------------------------------------------CCTGACACTTCGTATGAGAAGAAG-------------------------------- | 24 | - | - | - | 1 | |
| ----------------------------------------------TGACACTTCGTATGAGAAGAAG-------------------------------- | 22 | - | - | - | 1 | |
| -----------------------------TGTGCTCTCTCCTGACCTGAC-------------------------------------------------- | 21 | - | - | - | 1 | |
| -----------------------------------------TGACCTGACACTTCGTATGAG-------------------------------------- | 21 | - | 1 | - | - | |
| ----------------------------------------------TGACACTTCGTATGAGAAGAAGCT------------------------------ | 24 | - | - | - | 1 | |
| ----------------------------------------------------------TGAGAAGAAGCTTGGCCGGGACTG------------------ | 24 | - | - | - | 1 | |
| ----------------------------------TCTCTCCTGACCTGACACT----------------------------------------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------TTCGTATGAGAAGAAGCTT----------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------------CTGACACTTCGTATGAGA------------------------------------- | 18 | - | - | - | 1 | |
| -------------------------------------CTCCTGACCTGACACTTCGT------------------------------------------- | 20 | - | - | - | 1 | |
| -----------------------------------------------GACACTTCGTATGAGAAGA---------------------------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------GAAGCTTGGCCGGGACTG------------------ | 18 | - | - | - | 1 | |
| --------------------TCCTGTCTGTGTGCTCTCTCCT---------------------------------------------------------- | 22 | - | - | - | 1 | |
| ----------------------------------TCTCTCCTGACCTGACACTTCG-------------------------------------------- | 22 | - | - | - | 1 | |
| -----------------------------------------------------TCGTATGAGAAGAAGCTTG---------------------------- | 19 | - | - | - | 1 | |
| rat | cctgagagtggaggaagctgtcctgtctgtgtgctctctcctgaccTGACACTTCGTATGAGAAGAagcttggccgggactgtgtgtacctgctctgagg | |||||
| **************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | |||||
| rat | (((.(((((((.....((.((((((.(((...((((((((...((..........))..)))).)).)).))).)))))).))......))))))).))) | 0.950 -30.90 | ||||
| rat | chromosome:12:43044598:43044697:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
sblock11831 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.109 | no | no | 0.44/0.65 | 18/22/0.88 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 72 8 1 3 | 0 0 0 0 | 4 2 1 1 | 0 0 0 0 | 9 28 8 2 | -1 -18 3 10 | 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.33 0.47 0.32 0.22 | 4 4 2 2 | 104 | 4 | 9 | 7 |
| reads | miRBase family seed | |||||
| seed | ----------CCGAUGA---------------------------------------------- | 87 | novel | |||
| seed | -----------------------------GCCCAGA--------------------------- | 9 | novel | |||
| seed | --------------------------------------------ACUAUUG------------ | 3 | novel | |||
| seed | ---------------------------CUGCCCA----------------------------- | 2 | novel | |||
| seed | ---------------GACGGCC----------------------------------------- | 2 | novel | |||
| seed | -------------------------------------CACAGGG------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ---------TCCGATGACGGCCTTGCTCTG--------------------------------- | 21 | 3 | 6 | 72 | 1 | |
| ----------------------------TGCCCAGATCACAGGGACT---------------- | 19 | - | 1 | 8 | - | |
| ---------TCCGATGACGGCCTTGCTCT---------------------------------- | 20 | - | 1 | 4 | - | |
| -------------------------------------------GACTATTGCGAATGCTAC-- | 18 | - | - | 3 | - | |
| --------------------------TCTGCCCAGATCACAGGGACT---------------- | 21 | - | - | 2 | - | |
| ------------------------------------TCACAGGGACTATTGCGAA-------- | 19 | 1 | - | - | - | |
| --------------TGACGGCCTTGCTCTGCCCAGA--------------------------- | 22 | - | - | 1 | - | |
| --------------TGACGGCCTTGCTCTGCCCA----------------------------- | 20 | - | - | 1 | - | |
| rat | ggtggcaaaTCCGATGACGGCCTTGCTCTGcccagatcacagggactattgcgaatgctaccg | |||||
| *************************************************************** | ||||||
| rat | (((((((..(((((((....(((((.(((....)))...)))))..))))).)).))))))). | 0.620 -20.80 | ||||
| rat | chromosome:8:72082735:72082797:-1 | intergenic |
sblock12330 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.283 | no | no | 0.42/0.64 | 18/26/0.84 | 1.8 0.0 | 3.5 0.0 | 4 18 | 0 0 | 2 6 | 0 0 | 2 17 | 6 -4 | 5arm 3arm_loop | 3 3 | nd nd | 0.24 0.43 | 3 6 | 51 | 7 | 0 | 9 |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------CCUAGCU-------------------------------- | 36 | novel | ||||||
| seed | -----------------------------------------AGCUUGU----------------------------- | 5 | novel | ||||||
| seed | -------------------------------------UCCUAGC--------------------------------- | 2 | novel | ||||||
| seed | --------------------------UCCAAGG-------------------------------------------- | 2 | novel | ||||||
| seed | ---CUGCUUC------------------------------------------------------------------- | 2 | novel | ||||||
| seed | -----GCUUCCU----------------------------------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------UCUUCCU------------------------------------ | 1 | novel | ||||||
| seed | ----------------------------------------UAGCUUG------------------------------ | 1 | novel | ||||||
| seed | --------UCCUGGG-------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------TCCTAGCTTGTACTGTCTTCCTG----------------- | 23 | 3 | - | - | 1 | 1 | 18 | 1 | |
| -------------------------------------TCCTAGCTTGTACTGTCTTC-------------------- | 20 | 4 | - | 1 | - | - | 2 | - | |
| ----------------------------------------TAGCTTGTACTGTCTTCCTG----------------- | 20 | - | - | - | - | - | 4 | - | |
| -------------------------------------TCCTAGCTTGTACTGTCTTCC------------------- | 21 | - | - | - | - | - | 2 | - | |
| -------------------------TTCCAAGGTTCTTCCTAGCTTGTACT-------------------------- | 26 | - | - | - | - | - | 2 | - | |
| -------TTCCTGGGTCCTGGAGGGT--------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| --TCTGCTTCCTGGGTCCTGGAGGGTTC------------------------------------------------- | 26 | - | 1 | - | - | - | - | - | |
| -------------------------------------TCCTAGCTTGTACTGTCTTCCT------------------ | 22 | - | - | - | - | - | 1 | - | |
| ---------------------------------TTCTTCCTAGCTTGTACTGTCTTCC------------------- | 25 | - | - | - | - | - | 1 | - | |
| ------------------------------------TTCCTAGCTTGTACTGTCTTCC------------------- | 22 | - | - | - | - | - | 1 | - | |
| -------------------------------------TCCTAGCTTGTACTGTCTTCCTGCC--------------- | 25 | - | - | - | - | - | 1 | - | |
| ----------------------------------------TAGCTTGTACTGTCTTCCTGCCTC------------- | 24 | - | - | - | - | - | 1 | - | |
| ---------------------------------------CTAGCTTGTACTGTCTTCCTGC---------------- | 22 | - | - | - | - | - | 1 | - | |
| ------------------------------------TTCCTAGCTTGTACTGTCTTCCT------------------ | 23 | - | - | - | - | - | 1 | - | |
| -------------------------------------TCCTAGCTTGTACTGTCT---------------------- | 18 | - | - | - | - | - | 1 | - | |
| ----TGCTTCCTGGGTCCTGGAGGGTTCC------------------------------------------------ | 25 | - | - | - | - | - | 1 | - | |
| --TCTGCTTCCTGGGTCCTGGAG------------------------------------------------------ | 21 | - | - | - | - | - | 1 | - | |
| rat | cttctgcttcctgggtcctggagggttccaaggttctTCCTAGCTTGTACTGTCTTCCTGcctcggtggatagaggc | ||||||||
| ***************************************************************************** | |||||||||
| --------------------------------------------------------------------------------------- | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | ||||||||
| rat | ((((((((.((.((((...((((((.....(((((......)))))......)))))).)))).)).)).)))))). | 0.930 -22.60 | |||||||
| rat | chromosome:9:105315456:105315532:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000047326|ENSRNOG00000037286 ## ENSRNOG00000037286|protein_coding|LOC367336| |
sblock3343 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.534 | no | no | 0.37/0.59 | 18/24/0.79 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 26 5 | 0 0 0 0 | 1 1 4 1 | 0 0 0 0 | 11 33 41 35 | 25 3 -9 -3 | 5arm 5arm 3arm_loop 3arm_loop | 2 2 2 2 | nd nd nd nd | 0.23 0.32 0.60 0.35 | 1 3 8 2 | 77 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------GACACUU----------------------------------------------------- | 56 | novel | |||
| seed | ------------------------------------------------------------------UCGUAUG----------------------------------------------- | 6 | novel | |||
| seed | -------------------------------------------GUGCUCU---------------------------------------------------------------------- | 3 | novel | |||
| seed | -------------------------------------------------------GACCUGA---------------------------------------------------------- | 3 | novel | |||
| seed | ------------------------------------------------CUCUCCU----------------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------CUGACAC------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------CGUAUGA---------------------------------------------- | 1 | novel | |||
| seed | ------------CCCUGAG----------------------------------------------------------------------------------------------------- | 1 | miR-125a/125b/351 | |||
| seed | ----------------------------------CCUGUCU------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------UCCUGAC-------------------------------------------------------------- | 1 | miR-378* | |||
| seed | -------------------------------------------------------------ACACUUC---------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------UGACACU------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| -----------------------------------------------------------TGACACTTCGTATGAGAAGA----------------------------------------- | 20 | 6 | - | - | 26 | |
| -----------------------------------------------------------TGACACTTCGTATGAGAAGAA---------------------------------------- | 21 | - | - | - | 6 | |
| -----------------------------------------------------------TGACACTTCGTATGAGAAG------------------------------------------ | 19 | - | - | 2 | 4 | |
| -----------------------------------------------------------TGACACTTCGTATGAGAAGAAGC-------------------------------------- | 23 | - | - | - | 5 | |
| -----------------------------------------------------------------TTCGTATGAGAAGAAGCTTG----------------------------------- | 20 | - | - | - | 5 | |
| -----------------------------------------------------------TGACACTTCGTATGAGAA------------------------------------------- | 18 | - | - | - | 5 | |
| ------------------------------------------TGTGCTCTCTCCTGACCTGACAC------------------------------------------------------- | 23 | - | - | - | 2 | |
| ------------------------------------------------------TGACCTGACACTTCGTATGAGA-------------------------------------------- | 22 | - | - | - | 2 | |
| -----------------------------------------------TCTCTCCTGACCTGACACTTCG--------------------------------------------------- | 22 | - | - | - | 1 | |
| ---------------------------------TCCTGTCTGTGTGCTCTCTCCT----------------------------------------------------------------- | 22 | - | - | - | 1 | |
| -----------TCCCTGAGAGTGGAGGAAGCTG--------------------------------------------------------------------------------------- | 22 | 1 | - | - | - | |
| ------------------------------------------------------------------TCGTATGAGAAGAAGCTTG----------------------------------- | 19 | - | - | - | 1 | |
| -----------------------------------------------TCTCTCCTGACCTGACACT------------------------------------------------------ | 19 | - | - | - | 1 | |
| -----------------------------------------------------------------TTCGTATGAGAAGAAGCTT------------------------------------ | 19 | - | - | - | 1 | |
| ---------------------------------------------------------CCTGACACTTCGTATGAGAAGAAG--------------------------------------- | 24 | - | - | - | 1 | |
| ------------------------------------------------------------GACACTTCGTATGAGAAGA----------------------------------------- | 19 | - | - | - | 1 | |
| -----------------------------------------------------------TGACACTTCGTATGAGAAGAAGCT------------------------------------- | 24 | - | - | - | 1 | |
| --------------------------------------------------CTCCTGACCTGACACTTCGT-------------------------------------------------- | 20 | - | - | - | 1 | |
| -----------------------------------------------------------TGACACTTCGTATGAGAAGAAG--------------------------------------- | 22 | - | - | - | 1 | |
| ------------------------------------------------------TGACCTGACACTTCGTATGAG--------------------------------------------- | 21 | - | 1 | - | - | |
| ------------------------------------------TGTGCTCTCTCCTGACCTGAC--------------------------------------------------------- | 21 | - | - | - | 1 | |
| ----------------------------------------------------------CTGACACTTCGTATGAGA-------------------------------------------- | 18 | - | - | - | 1 | |
| rat | tgggctgtggttccctgagagtggaggaagctgtcctgtctgtgtgctctctcctgaccTGACACTTCGTATGAGAAGAagcttggccgggaccatgtgtccctgctctgaggacattcc | |||||
| ************************************************************************************************************************ | ||||||
| rat | .((..(((.....(((.(((((((.(((.((.((((((.(((...((((((((...((..........))..)))).)).)).))).))))))...)).)))))))))).))))))..)) | 0.910 -38.50 | ||||
| rat | chromosome:12:44298414:44298533:-1 | intergenic |
sblock3382 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.39/0.59 | 18/25/0.80 | 0.0 0.0 0.0 0.0 0.0 0.0 | 0.6 2.7 0.0 0.0 0.0 0.0 | 18 3 14 8 1 2 | 0 0 0 0 0 0 | 9 1 2 3 1 1 | 0 0 0 0 0 0 | 14 31 48 24 16 11 | 10 -7 -21 3 10 17 | 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.39 0.39 0.36 0.25 0.33 0.32 | 3 4 4 2 4 4 | 74 | 9 | -5 | -8 |
| reads | miRBase family seed | ||||||||||
| seed | ---------------GCCUUCG------------------------------------------------------------------------------ | 39 | novel | ||||||||
| seed | -------------------------------------------------GGAAAGU-------------------------------------------- | 18 | novel | ||||||||
| seed | ---------------------------------------------------------GCACACU------------------------------------ | 10 | novel | ||||||||
| seed | --------------------------------AGGUUCA------------------------------------------------------------- | 3 | novel | ||||||||
| seed | -----------------------------------------------------------------------GGAAGCC---------------------- | 2 | novel | ||||||||
| seed | ----------------------------------------------------------------GCCAGAU----------------------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------------AAAGUUG------------------------------------------ | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------TGCCTTCGCCTCAGTTCTAGGTT--------------------------------------------------------------- | 23 | 3 | 1 | 1 | 2 | - | 1 | 2 | 13 | 1 | |
| ------------------------------------------------TGGAAAGTTGCACACTGCCAGA------------------------------ | 22 | 1 | - | - | - | - | - | - | 14 | - | |
| --------------------------------------------------------TGCACACTGCCAGATGGAAG------------------------ | 20 | 1 | - | - | - | - | - | - | 8 | - | |
| --------------TGCCTTCGCCTCAGTTCTAGGTTCA------------------------------------------------------------- | 25 | - | - | - | - | - | - | 1 | 5 | - | |
| --------------TGCCTTCGCCTCAGTTCTAG------------------------------------------------------------------ | 20 | 1 | - | - | - | 1 | - | - | 2 | - | |
| ------------------------------------------------TGGAAAGTTGCACACTGCCA-------------------------------- | 20 | - | - | - | - | - | - | - | 2 | - | |
| --------------TGCCTTCGCCTCAGTTCTAGGT---------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | 1 | - | |
| --------------TGCCTTCGCCTCAGTTCTA------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------------TGGAAGCCTTTAAGGACCC----------- | 19 | - | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------------------TGCCAGATGGAAGCCTTTAAG---------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------TGCACACTGCCAGATGGAAGCC---------------------- | 22 | - | - | - | 1 | - | - | - | - | - | |
| --------------TGCCTTCGCCTCAGTTCT-------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------TAGGTTCATTGTGCTACTG-------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------TAGGTTCATTGTGCTACT--------------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------TAGGTTCATTGTGCTACTGGAAAGT-------------------------------------------- | 25 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------GAAAGTTGCACACTGCCAGA------------------------------ | 20 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------TGGAAAGTTGCACACTGCC--------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| rat | ggctgggatgaaggTGCCTTCGCCTCAGTTCTAGGTTCAttgtgctacTGGAAAGTTGCACACTGCCAGATGGAAGcctttaaggacccatgccagaccg | ||||||||||
| **************************************************************************************************** | |||||||||||
| rat | ((((((.(((..(((.((((.((.((...(((.(((....(((((.(((....))).)))))..))))))..)).))....)))))))))).)))).)). | 0.940 -38.60 | |||||||||
| rat | chromosome:12:5604010:5604109:1 | intergenic |
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