other hairpins
novel_cloningHIGH_multiarm_DicerNOK_loopOverlap (6 loci)
novel_lenNOK_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (6 loci)
block60838 [novel_lenNOK_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.55/0.62 | 19/26/0.50 | 6.8 | 8.8 | 4 | 0 | 2 | 0 | 20 | -18 | 5arm_loop | 1 | nd | 0.45 | 5 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------AGGAGAC----------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------GGAGACA---------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------GAACCCC------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------CCUUGAA---------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------ACCTTGAACCCCAGGAGACA---------------------------------------------------------------- | 20 | 1 | - | |
| -------------------------------CAGGAGACACAGCACCCACAACT-------------------------------------------------- | 23 | 1 | - | |
| ------------------------TGAACCCCAGGAGACACAGCACCCAC------------------------------------------------------ | 26 | - | 1 | |
| --------------------------------AGGAGACACAGCACCCACA----------------------------------------------------- | 19 | - | 1 | |
| rat | ctgggaacccttctctcccaACCTTGAACCCCAGGAGACACAGCACCCACAACTaatcttgggacaccccttatctggttggaagagagtaaactatttcccag | |||
| ******************************************************************************************************** | ||||
| rat | (((((((...((((((.((((((..((..(((((((....................)))))))..........)).)))))).))))))........))))))) | 0.870 -30.35 | ||
| rat | chromosome:10:15086545:15086648:1 | intergenic |
block637394 [novel_lenNOK_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.58/0.60 | 19/20/0.33 | 1.3 | 1.7 | 3 | 0 | 3 | 0 | 29 | -4 | 5arm_loop_3arm | 2 | nd | 0.37 | 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------GGCUGAG------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------GAGGCUG--------------------------------------------------------------- | 1 | miR-485 | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----------------------------GGAGGCTGAGCCAAAGTGA---------------------------------------------------- | 19 | - | 1 | - | |
| -------------------------------AGGCTGAGCCAAAGTGAGCC------------------------------------------------- | 20 | - | - | 1 | |
| -------------------------------AGGCTGAGCCAAAGTGAGC-------------------------------------------------- | 19 | 1 | - | - | |
| rat | gtggggtgtggagcggcggccgcggggctGGAGGCTGAGCCAAAGTGAGCCacggtcgctcggttccgctagccgcgcctaatcgctcagtcgccctaca | ||||
| **************************************************************************************************** | |||||
| rat | ((((((((..((((((.((.((((((((.(((.(((((((....(((...)))....)))))))))))))..)))))))...))))))...)))))))). | 0.980 -54.40 | |||
| rat | chromosome:17:94943670:94943769:-1 | intergenic |
block713184 [novel_lenNOK_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.42/0.59 | 19/22/0.20 | 2.5 0.0 | 0.2 0.0 | 4 1 | 0 0 | 2 1 | 0 0 | 17 11 | -3 7 | 3arm 3arm | 1 1 | nd nd | 0.53 0.47 | 6 4 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------ACCACAC----------------------------- | 2 | novel | |
| seed | -----------------------------------------CGGACCA-------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------AGACAAU---------------------- | 1 | novel | |
| seed | ---------------------------------------------CCACACA---------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------------GACCACACAGACAATGGGA------------------ | 19 | 1 | 1 | |
| ----------------------------------------CCGGACCACACAGACAATGGGA------------------ | 22 | - | 1 | |
| --------------------------------------------------CAGACAATGGGATAGACTT----------- | 19 | - | 1 | |
| --------------------------------------------ACCACACAGACAATGGGAT----------------- | 19 | - | 1 | |
| rat | atttctttctcttccccctccatcccctctctttctttctCCGGACCACACAGACAATGGGATAGACTTtgagaaagaga | |||
| ******************************************************************************** | ||||
| rat | .((((((((((.......((.(((((...(((.....((....))......)))....))))).))....)))))))))) | 1.000 -17.40 | ||
| rat | chromosome:18:63577686:63577765:-1 | intergenic |
block881792 [novel_lenNOK_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.44 | 18/25/0.33 | 2.3 | 1.3 | 3 | 0 | 1 | 0 | 25 | -22 | 3arm_loop | 1 | nd | 0.38 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------CAACUUU--------------------------------------- | 1 | novel |
| seed | ---------------------------------AACUUUU-------------------------------------- | 1 | novel |
| seed | -----------------------------AGGCAAC------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------AAGGCAACTTTTTAAACCCGGCACT------------------------- | 25 | 1 | |
| -------------------------------GCAACTTTTTAAACCCGG----------------------------- | 18 | 1 | |
| --------------------------------CAACTTTTTAAACCCGGCACT------------------------- | 21 | 1 | |
| rat | agaggtggggcacatgggtgctgggcaaAAGGCAACTTTTTAAACCCGGCACTgaactctccatagagcccggcccct | ||
| ****************************************************************************** | |||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||
| rat | ((.(((.((((..((((((((((((.(((((....)))))....))))))))........))))...)))).))).)) | 0.430 -34.80 |
| rat | chromosome:1:129031210:129031287:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
block1198775 [novel_lenNOK_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.39/0.47 | 18/19/0.00 | 2.2 | 1.5 | 4 | 0 | 4 | 0 | 15 | -5 | 5arm_loop_3arm | 1 | nd | 0.44 | 5 | 4 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------CCCAAUA------------------------------------------- | 3 | novel | |||
| seed | ----------------CAGCCCA---------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S2 | T5S2 | |||
| ------------------GCCCAATACAAACAACTA--------------------------------- | 18 | 1 | 1 | - | 1 | |
| ---------------CCAGCCCAATACAAACAAC----------------------------------- | 19 | - | - | 1 | - | |
| rat | gccaggccactctccCCAGCCCAATACAAACAACTAgtgatctgtctgggaaggaggaggtgccgggca | |||||
| ********************************************************************* | ||||||
| ------------------------------------------------------------------------------- | ENSRNOT00000056652 ENSRNOG00000020657 Shc1 | |||||
| rat | (((.((.(((.((((((..((((..(((.((.....))....))).))))..)).))))))))).))). | 1.000 -28.70 | ||||
| rat | chromosome:2:181619210:181619278:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000056652|ENSRNOG00000020657 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000028038|ENSRNOG00000020657 ## ENSRNOG00000020657|protein_coding|Shc1|src homology 2 domain-containing transforming protein C1 [Source:RefSeq_peptide;Acc:NP_445969] |
block958704 [novel_lenNOK_5varHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.48/0.59 | 19/23/0.60 | 2.0 0.0 | 1.0 1.3 | 2 3 | 0 0 | 1 2 | 0 0 | 38 30 | -3 6 | 3arm 3arm | 4 4 | nd nd | 0.32 0.43 | 4 6 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------ACAGCCC--------------------------------------------- | 3 | novel | |
| seed | --------------------------------------------------------CACUCCU------------------------------------------------------ | 1 | miR-483 | |
| seed | ------------------------------------------------------------CCUCUAC-------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ----------------------------------------------------------------TACAGCCCAACAGGAATGC---------------------------------- | 19 | 1 | 1 | |
| -----------------------------------------------------------TCCTCTACAGCCCAACAGGA-------------------------------------- | 20 | - | 1 | |
| -------------------------------------------------------CCACTCCTCTACAGCCCAACAG---------------------------------------- | 22 | - | 1 | |
| ----------------------------------------------------------------TACAGCCCAACAGGAATGCATCA------------------------------ | 23 | - | 1 | |
| rat | agtcactagaccattggatgatgatgaggcctgtgcgtatagggcgaggtagctaCCACTCCTCTACAGCCCAACAGGAATGCATCAtcatcatcaaggaaagggaataactggact | |||
| ********************************************************************************************************************* | ||||
| rat | ((((..((..((....(((((((((((..(((((.......((((((((.((......))))))....)))).)))))......)))))))))))........))..))....)))) | 0.450 -36.60 | ||
| rat | chromosome:1:47745460:47745576:1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH (6 loci)
sblock11752 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.063 | no | no | 0.33/0.45 | 18/25/0.07 | 0.0 1.2 | 0.0 1.3 | 174 9 | 0 0 | 10 1 | 0 0 | 13 9 | 5 6 | 5arm 3arm | 1 1 | nd nd | 0.32 0.39 | 2 5 | 257 | 10 | -1 | 4 |
| reads | miRBase family seed | |||||||||||
| seed | --------------GACAACU-------------------------------------------------------------- | 248 | novel | |||||||||
| seed | -------------------------------------------------ACAGUAG--------------------------- | 6 | novel | |||||||||
| seed | ------------------------------------------------------AGAGAUA---------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------CAGUAGA-------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------TGACAACTTTTCAGACTCC--------------------------------------------------- | 19 | 15 | 11 | 9 | 3 | 2 | 2 | 5 | 7 | 174 | 4 | |
| -------------TGACAACTTTTCAGACTC---------------------------------------------------- | 18 | 1 | - | 1 | 1 | - | - | - | - | 3 | 1 | |
| -------------TGACAACTTTTCAGACTCCC-------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 4 | - | |
| -------------TGACAACTTTTCAGACTCCCT------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | 2 | - | |
| ------------------------------------------------TACAGTAGAGATAATCTTGTCAG------------ | 23 | - | - | - | - | - | - | - | - | 3 | - | |
| ------------------------------------------------TACAGTAGAGATAATCTTGTCAGT----------- | 24 | - | - | - | - | - | - | - | - | 3 | - | |
| -------------TGACAACTTTTCAGACTCCCTT------------------------------------------------ | 22 | 1 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------TAGAGATAATCTTGTCAGTGA--------- | 21 | - | - | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------------ACAGTAGAGATAATCTTGTCAGTGA--------- | 25 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ttctgcccagtttTGACAACTTTTCAGACTCCcttgtaagagacaagctacagtagagataatcttgtcagtgatgagcagga | |||||||||||
| *********************************************************************************** | ||||||||||||
| rat | ((((((.((...(((((((..((((..(((..(((((.....)))))....))).)))).....)))))))...)).)))))) | 0.940 -20.80 | ||||||||||
| rat | chromosome:8:72051514:72051596:-1 | intergenic |
sblock3652 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.27/0.37 | 19/23/0.04 | 0.0 0.0 | 0.0 0.0 | 33 1 | 0 0 | 7 1 | 0 0 | 7 21 | 28 11 | 5arm 3arm | 1 1 | nd nd | 0.32 0.36 | 3 5 | 53 | 7 | 0 | -16 |
| reads | miRBase family seed | ||||||||
| seed | --------GUGCUUA----------------------------------------------------------------------------------------------------- | 47 | novel | ||||||
| seed | ----------GCUUACU--------------------------------------------------------------------------------------------------- | 5 | novel | ||||||
| seed | --------------------------------------------------------------------------CAUUAAC----------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| -------TGTGCTTACTAAGTGTCTT------------------------------------------------------------------------------------------ | 19 | 6 | 1 | 1 | 1 | 2 | 2 | 33 | |
| ---------TGCTTACTAAGTGTCTTAA---------------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | 4 | |
| -------TGTGCTTACTAAGTGTCTTAATT-------------------------------------------------------------------------------------- | 23 | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------------------------TCATTAACTTCAGTGTTTAACA--------------------- | 22 | - | 1 | - | - | - | - | - | |
| rat | acggtttTGTGCTTACTAAGTGTCTTaattcctgaagtgaaatctccaactcctgattctgggggagagggtatcattaacttcagtgtttaacatgaggtgggcggggggcggtc | ||||||||
| ******************************************************************************************************************** | |||||||||
| rat | ((.(((((.((((((((..((((...(((..(((((((.......((..(((((........)))))..))........))))))).)))..))))..)))))))).))))).)). | 1.000 -38.46 | |||||||
| rat | chromosome:12:44302851:44302966:1 | intergenic |
sblock4403 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.129 | no | no | 0.33/0.42 | 18/24/0.26 | 0.0 0.0 | 0.0 0.0 | 61 2 | 0 0 | 9 1 | 0 0 | 16 10 | 1 -2 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.32 0.35 | 3 3 | 125 | 9 | -3 | -2 |
| reads | miRBase family seed | ||||||||||
| seed | -----------------CUCGUUU---------------------------------------------------- | 116 | novel | ||||||||
| seed | ------------------UCGUUUC--------------------------------------------------- | 4 | novel | ||||||||
| seed | ---------------GUCUCGU------------------------------------------------------ | 2 | novel | ||||||||
| seed | -----------------------------------------------CCCAAAA---------------------- | 2 | novel | ||||||||
| seed | -------------------CGUUUCA-------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------TCTCGTTTCACAATTCTTG----------------------------------------- | 19 | 8 | 5 | 2 | 3 | - | 4 | 6 | 61 | 1 | |
| ----------------TCTCGTTTCACAATTCTTGGTA-------------------------------------- | 22 | 3 | 2 | - | - | 1 | - | 1 | 4 | - | |
| ----------------TCTCGTTTCACAATTCTTGGTACC------------------------------------ | 24 | 1 | - | - | - | - | - | - | 9 | - | |
| -----------------CTCGTTTCACAATTCTTGGT--------------------------------------- | 20 | 1 | - | - | - | - | 1 | - | 1 | 1 | |
| ----------------TCTCGTTTCACAATTCTTGG---------------------------------------- | 20 | - | - | - | - | - | - | - | 3 | - | |
| ----------------------------------------------TCCCAAAAAGTGTGTCTTGA---------- | 20 | - | - | - | - | - | - | - | 2 | - | |
| ----------------TCTCGTTTCACAATTCTTGGTAC------------------------------------- | 23 | - | - | - | - | - | - | - | 1 | - | |
| --------------GGTCTCGTTTCACAATTCTT------------------------------------------ | 20 | - | - | - | - | - | - | - | 1 | - | |
| ------------------TCGTTTCACAATTCTTGGT--------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | |
| ----------------TCTCGTTTCACAATTCTT------------------------------------------ | 18 | - | - | - | - | - | - | - | 1 | - | |
| --------------GGTCTCGTTTCACAATTCT------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| rat | ccctttaagttgctggTCTCGTTTCACAATTCTTGgtacctaacactcccaaaaagtgtgtcttgataccaagggc | ||||||||||
| **************************************************************************** | |||||||||||
| rat | ((((.........((((.(((...((((.((.((((............)))).)).))))...))).)))))))). | 0.930 -16.20 | |||||||||
| rat | chromosome:15:256073:256148:-1 | intergenic |
sblock7239 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.26/0.57 | 18/25/0.24 | 0.0 0.0 0.0 0.0 1.2 | 0.0 0.0 0.0 0.0 2.0 | 33 10 2 1 4 | 0 0 0 0 0 | 7 4 1 1 1 | 0 0 0 0 0 | 4 17 34 13 0 | 17 3 -17 1 8 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.58 0.60 0.43 0.32 0.32 | 11 8 5 2 2 | 72 | 8 | 0 | 0 |
| reads | miRBase family seed | |||||||||
| seed | -----CCAACAG------------------------------------------------------------------ | 42 | novel | |||||||
| seed | ------------------ACUUUAU----------------------------------------------------- | 12 | novel | |||||||
| seed | ---------------CUUACUU-------------------------------------------------------- | 6 | novel | |||||||
| seed | -----------------UACUUUA------------------------------------------------------ | 2 | novel | |||||||
| seed | --------------------------------------------------------GCUUUCU--------------- | 2 | novel | |||||||
| seed | ----UCCAACA------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -----------------------------------AGCGGUC------------------------------------ | 2 | novel | |||||||
| seed | --------ACAGACU--------------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------UCUCCCU------------------------ | 1 | novel | |||||||
| seed | -------------------------------------------------------UGCUUUC---------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------CUGCUUU----------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----TCCAACAGACTCTTACTTT------------------------------------------------------- | 19 | 1 | 1 | 3 | 2 | 1 | - | 33 | 1 | |
| -----------------TACTTTATTGGCACAGCTAG----------------------------------------- | 20 | 1 | - | - | - | - | - | 10 | - | |
| --------------TCTTACTTTATTGGCACA---------------------------------------------- | 18 | 1 | - | - | - | - | 1 | 1 | - | |
| ----------------------------------TAGCGGTCACACTTCTCCCTCTG--------------------- | 23 | - | - | - | - | - | - | 2 | - | |
| ---TTCCAACAGACTCTTACTT-------------------------------------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| ----------------TTACTTTATTGGCACAGCT------------------------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| --------------TCTTACTTTATTGGCACAG--------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------TTCTCCCTCTGCTTTCTGA------------- | 19 | - | - | - | - | - | - | 1 | - | |
| --------------TCTTACTTTATTGGCACAGCT------------------------------------------- | 21 | - | - | - | 1 | - | - | - | - | |
| -------AACAGACTCTTACTTTATT---------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------CTGCTTTCTGATTGGTTCCCCCC- | 23 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------TCTGCTTTCTGATTGGTTCCCCCCA | 25 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------TGCTTTCTGATTGGTTCCCC--- | 20 | - | - | - | - | - | - | 1 | - | |
| -----------------TACTTTATTGGCACAGCTA------------------------------------------ | 19 | - | - | - | - | - | - | 1 | - | |
| --------------TCTTACTTTATTGGCACAGCTAG----------------------------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------TGCTTTCTGATTGGTTCCC---- | 19 | - | - | - | - | - | - | 1 | - | |
| rat | aggtTCCAACAGACTCTTACTTTATTGGCACAGCTAGcggtcacacttctccctctgctttctgattggttcccccca | |||||||||
| ****************************************************************************** | ||||||||||
| rat | .((..((((((((.............((((.((..((.((.....)).))..)).)))).)))).))))..))..... | 0.530 -15.34 | ||||||||
| rat | chromosome:20:5565590:5565667:1 | intergenic |
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