other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH (6 loci)
sblock8975 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.049 | no | no | 0.42/0.62 | 18/25/0.17 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 59 1 1 1 | 0 0 0 0 | 4 1 1 1 | 0 0 0 0 | 30 36 24 16 | 9 1 12 20 | 5arm 5arm 3arm 3arm | 3 3 3 3 | nd nd nd nd | 0.37 0.38 0.37 0.42 | 3 3 2 4 | 88 | 4 | 8 | 8 |
| reads | miRBase family seed | |||||
| seed | -------------------------------GAAGUUG-------------------------------------------------------------------------------- | 80 | novel | |||
| seed | ------------------------------UGAAGUU--------------------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------AAGUUGU------------------------------------------------------------------------------- | 2 | miR-382 | |||
| seed | -------------------------------------GUCAGGA-------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------AUGAAGU---------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------------------------------CAAGUUU--------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------------GAGGGGC----------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ------------------------------TGAAGTTGTCAGGAGACAG--------------------------------------------------------------------- | 19 | 3 | 2 | 1 | 59 | |
| ------------------------------TGAAGTTGTCAGGAGACAGG-------------------------------------------------------------------- | 20 | 1 | - | - | 3 | |
| ------------------------------TGAAGTTGTCAGGAGACAGGGCC----------------------------------------------------------------- | 23 | - | - | - | 3 | |
| ------------------------------TGAAGTTGTCAGGAGACA---------------------------------------------------------------------- | 18 | - | - | - | 3 | |
| ------------------------------TGAAGTTGTCAGGAGACAGGGCCT---------------------------------------------------------------- | 24 | - | - | - | 2 | |
| -------------------------------GAAGTTGTCAGGAGACAGG-------------------------------------------------------------------- | 19 | - | - | - | 2 | |
| ------------------------------TGAAGTTGTCAGGAGACAGGGC------------------------------------------------------------------ | 22 | 1 | - | - | 1 | |
| ----------------------------GATGAAGTTGTCAGGAGACAG--------------------------------------------------------------------- | 21 | - | - | - | 1 | |
| ---------------------------------------------------------------------------TGAGGGGCTCAAGTTTCAG------------------------ | 19 | - | - | - | 1 | |
| ------------------------------------TGTCAGGAGACAGGGCCTCAG------------------------------------------------------------- | 21 | - | - | - | 1 | |
| -----------------------------------------------------------------------------------TCAAGTTTCAGCCTGGTTA---------------- | 19 | - | - | - | 1 | |
| ------------------------------TGAAGTTGTCAGGAGACAGGGCCTC--------------------------------------------------------------- | 25 | - | - | - | 1 | |
| -----------------------------ATGAAGTTGTCAGGAGACAGG-------------------------------------------------------------------- | 21 | - | - | - | 1 | |
| -----------------------------ATGAAGTTGTCAGGAGACAG--------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| rat | ccagttgcgtgcagactccaggaagagagaTGAAGTTGTCAGGAGACAGggcctcagcaggttgctgccctatcatgaggggctcaagtttcagcctggttataataggcactactgg | |||||
| ********************************************************************************************************************** | ||||||
| rat | (((((...((((.....(((((..((((..(((..((.(((...((.(((((...(((.....)))))))).)).))).))..)))..))))..))))).........)))).))))) | 0.940 -40.74 | ||||
| rat | chromosome:4:119376900:119377017:1 | intergenic |
sblock9059 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.296 | no | no | 0.32/0.45 | 19/24/0.08 | 0.0 0.0 | 0.0 0.0 | 2 49 | 0 0 | 1 6 | 0 0 | 14 18 | -2 1 | 5arm_loop 3arm | 1 1 | nd nd | 0.37 0.47 | 3 4 | 71 | 6 | 3 | 0 |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------CUCAUUU----------------------------- | 62 | novel | |||||
| seed | -------------------------------------GCUCAUU------------------------------ | 4 | novel | |||||
| seed | ----------------------------------UUUGCUC--------------------------------- | 2 | novel | |||||
| seed | ---------------AAAAGAA---------------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------GUUUCUG--------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------GCTCATTTGGTTTCTGAAA------------------ | 19 | 7 | 1 | - | 1 | 49 | 1 | |
| ------------------------------------TGCTCATTTGGTTTCTGAA------------------- | 19 | - | 1 | 1 | - | 2 | - | |
| --------------TAAAAGAACCACAAGTACA----------------------------------------- | 19 | - | - | - | - | 2 | - | |
| ---------------------------------TTTTGCTCATTTGGTTTCTG--------------------- | 20 | - | - | - | - | 2 | - | |
| -------------------------------------GCTCATTTGGTTTCTGAAATGGA-------------- | 23 | - | - | - | - | 1 | - | |
| -------------------------------------GCTCATTTGGTTTCTGAAATGGAT------------- | 24 | - | - | - | - | 1 | - | |
| ---------------------------------------------GGTTTCTGAAATGGATGCTG--------- | 20 | - | - | - | - | 1 | - | |
| -------------------------------------GCTCATTTGGTTTCTGAAATG---------------- | 21 | - | - | - | - | 1 | - | |
| rat | ctcaaccctctttctaaaagaaccacaagtacattttGCTCATTTGGTTTCTGAAAtggatgctggattgcaga | |||||||
| ************************************************************************** | ||||||||
| rat | (((((.((....((((..(((((((..((((.....))))....))))).))....))))....)).))).)). | 0.770 -12.60 | ||||||
| rat | chromosome:4:164247197:164247270:1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH (6 loci)
sblock2238 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.068 | no | no | 0.17/0.35 | 18/20/0.04 | 0.0 0.0 | 0.0 0.0 | 183 1 | 0 0 | 9 1 | 0 0 | 23 3 | 2 16 | 5arm 3arm | 1 1 | nd nd | 0.47 0.33 | 4 4 | 290 | 9 | 18 | 17 |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------AACCGUU------------------------------------------------------- | 288 | miR-451 | ||||||||
| seed | -----------------------AAACCGU-------------------------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------------------------------------CUUAAUG------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| -----------------------AAACCGTTACCATTAATGA-------------------------------------------- | 19 | 3 | 12 | 10 | 7 | 107 | 76 | 23 | 20 | - | |
| -----------------------AAACCGTTACCATTAATG--------------------------------------------- | 18 | 1 | 2 | - | 1 | 6 | 5 | 2 | 1 | - | |
| -----------------------AAACCGTTACCATTAATGAC------------------------------------------- | 20 | - | 1 | - | - | 4 | 5 | 1 | - | 1 | |
| -----------------------------------------------------------------TCTTAATGTTGAAATTTT--- | 18 | - | 1 | - | - | - | - | - | - | - | |
| ----------------------GAAACCGTTACCATTAATGA-------------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | |
| rat | tataaaagcaaacaaacctgaagAAACCGTTACCATTAATGAcctttaaggtccagaagaatggctcttaatgttgaaattttata | ||||||||||
| ************************************************************************************** | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000020580 ENSRNOG00000015339 Shoc2 | ||||||||||
| rat | (((((((...((((......((((..(((((....((...((((.....))))...)).))))).))))..))))....))))))) | 0.920 -14.70 | |||||||||
| rat | chromosome:1:260263341:260263426:1 | Same_strand|Intronic_coding|ENSRNOT00000020580|ENSRNOG00000015339 ## ENSRNOG00000015339|protein_coding|Shoc2|soc-2 (suppressor of clear) homolog [Source:RefSeq_peptide;Acc:NP_001013173] |
sblock3310 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.331 | no | no | 0.40/0.48 | 19/25/0.24 | 0.3 0.0 0.0 | 0.4 0.0 0.0 | 11 1 49 | 0 0 0 | 3 1 7 | 0 0 0 | 4 33 9 | 9 -17 2 | 5arm_loop 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.43 0.42 0.32 | 4 4 4 | 78 | 8 | -6 | -8 |
| reads | miRBase family seed | |||||||||
| seed | ------------------------------------------AGGAAUC-------------------- | 54 | novel | |||||||
| seed | -----CAGGUGA--------------------------------------------------------- | 8 | miR-125a | |||||||
| seed | -------------AGCAAGA------------------------------------------------- | 4 | novel | |||||||
| seed | ------AGGUGAU-------------------------------------------------------- | 3 | novel | |||||||
| seed | --------------------------------------GCAUAGG------------------------ | 3 | novel | |||||||
| seed | -----------------------------------------UAGGAAU--------------------- | 2 | novel | |||||||
| seed | ---CUCAGGU----------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------AUAGGAA---------------------- | 1 | novel | |||||||
| seed | ----------GAUAGCA---------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------GUGAGCA---------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------TAGGAATCTCCCATTCTCA--------- | 19 | 1 | 1 | 1 | - | - | 1 | 49 | 1 | |
| ----TCAGGTGATAGCAAGAAGCAGA------------------------------------------- | 22 | - | - | - | - | - | - | 6 | - | |
| -------------------------------------AGCATAGGAATCTCCCATTCTCA--------- | 23 | - | - | - | - | - | - | 3 | - | |
| -----CAGGTGATAGCAAGAAGCAGA------------------------------------------- | 21 | - | - | - | - | - | - | 3 | - | |
| ----------------------------------------ATAGGAATCTCCCATTCTC---------- | 19 | 1 | - | 1 | - | - | - | - | - | |
| ----TCAGGTGATAGCAAGAAGCA--------------------------------------------- | 20 | - | - | - | - | 2 | - | - | - | |
| ------------TAGCAAGAAGCAGAATCCATGTGT--------------------------------- | 24 | 1 | - | - | - | - | - | - | - | |
| ------------TAGCAAGAAGCAGAATCCATG------------------------------------ | 21 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------CATAGGAATCTCCCATTCTC---------- | 20 | - | - | - | 1 | - | - | - | - | |
| ------------TAGCAAGAAGCAGAATCCATGTG---------------------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| --TCTCAGGTGATAGCAAGAAG----------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| ---------TGATAGCAAGAAGCAGAATCCATGT----------------------------------- | 25 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------TGTGAGCATAGGAATCTCC----------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------TAGCAAGAAGCAGAATCCA-------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| rat | cgtctcaggtgatagcaagaagcagaatccatgtgtgagcaTAGGAATCTCCCATTCTCAtccccagat | |||||||||
| ********************************************************************* | ||||||||||
| rat | .((((..((.(((....((((..(((.(((.((((....))))))).)))....)))).))))).)))) | 0.680 -14.30 | ||||||||
| rat | chromosome:12:44282247:44282315:-1 | intergenic |
sblock6761 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.253 | no | no | 0.47/0.67 | 18/26/0.64 | 1.3 0.0 0.5 0.0 1.5 0.0 | 0.7 0.3 0.0 0.0 2.0 0.0 | 3 72 2 1 2 3 | 0 0 0 0 0 0 | 1 6 2 1 2 2 | 0 0 0 0 0 0 | 0 12 40 31 16 2 | 22 12 -15 -6 2 22 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.47 0.50 0.53 0.45 0.42 0.43 | 4 4 8 5 5 4 | 107 | 7 | 4 | 5 |
| reads | miRBase family seed | ||||||||
| seed | -------------GAGCUAC----------------------------------------------------------------------------- | 89 | novel | ||||||
| seed | ---------------------------------------------------------------------------CAUCCCU--------------- | 3 | novel | ||||||
| seed | ----------------CUACGGG-------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | ------------------ACGGGUC------------------------------------------------------------------------ | 2 | novel | ||||||
| seed | -UAAAAGC----------------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | --AAAAGCC---------------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------GCCUCCU------------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------AAGUCAG------------------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------CCUUGUC----------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------UGUCCCA-------------------------------- | 1 | novel | ||||||
| seed | ------------------------------------------AGUCAGC------------------------------------------------ | 1 | novel | ||||||
| seed | --------------AGCUACG---------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -------------------CGGGUCU----------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------GCUACGG--------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ----AAGCCCA-------------------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ------------TGAGCTACGGGTCTGTGCAG----------------------------------------------------------------- | 20 | 4 | - | 2 | - | - | 50 | 1 | |
| ------------TGAGCTACGGGTCTGTGCA------------------------------------------------------------------ | 19 | 2 | - | - | 1 | - | 22 | - | |
| ------------TGAGCTACGGGTCTGTGC------------------------------------------------------------------- | 18 | 2 | 2 | - | - | - | 2 | - | |
| --------------------------------------------------------------------------TCATCCCTTACCCTCCTTGTG-- | 21 | 1 | - | - | - | - | 2 | - | |
| ---------------GCTACGGGTCTGTGCAGC---------------------------------------------------------------- | 18 | - | - | - | - | - | 2 | - | |
| ------------TGAGCTACGGGTCTGTGCAGCT--------------------------------------------------------------- | 22 | - | - | - | - | - | 1 | - | |
| -----------------------------------------AAGTCAGCCTCCTTCCTT-------------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| ---AAAGCCCACTGAGCTACGG--------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| -----------------TACGGGTCTGTGCAGCTGGGACAG-------------------------------------------------------- | 24 | - | - | - | - | - | 1 | - | |
| ------------------ACGGGTCTGTGCAGCTGGGAC---------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | |
| GTAAAAGCCCACTGAGCTAC----------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| -TAAAAGCCCACTGAGCTAC----------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| -------------GAGCTACGGGTCTGTGCAGCTGGGAC---------------------------------------------------------- | 26 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------AGCCTCCTTCCTTGTCCCAC------------------------------- | 20 | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------TTGTCCCACCAGCCTCCTCATCCC---------------- | 24 | - | - | - | - | - | 1 | - | |
| -----------------TACGGGTCTGTGCAGCTGG------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------TCCTTGTCCCACCAGCCTCCTCA-------------------- | 23 | 1 | - | - | - | - | - | - | |
| --------------AGCTACGGGTCTGTGCAGCTGGG------------------------------------------------------------ | 23 | - | - | - | - | - | 1 | - | |
| ----------------------------------------GAAGTCAGCCTCCTTCCTT-------------------------------------- | 19 | - | - | 1 | - | - | - | - | |
| rat | gtaaaagcccacTGAGCTACGGGTCTGTGCAGctgggacagaagtcagcctccttccttgtcccaccagcctcctcatcccttaccctccttgtgcc | ||||||||
| ************************************************************************************************* | |||||||||
| rat | ......((.((..(((....(((..((....(((((((((((((........))))..)))))))...)).....))..)))....)))..)).)). | 0.970 -23.00 | |||||||
| rat | chromosome:20:5523263:5523359:-1 | intergenic |
sblock6790 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.087 | no | no | 0.42/0.58 | 19/24/0.49 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 1.3 0.0 | 5 28 1 3 24 | 0 0 0 0 0 | 3 5 1 1 4 | 0 0 0 0 0 | 8 13 43 16 5 | 20 14 -15 4 20 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.58 0.55 0.47 0.36 0.37 | 5 5 5 5 2 | 78 | 6 | 6 | 8 |
| reads | miRBase family seed | |||||||
| seed | --------------GCGAAGU--------------------------------------------------------------------------- | 36 | novel | |||||
| seed | -------------------------------------------------------------------------AGGAGUC---------------- | 30 | novel | |||||
| seed | ---------UGGCUGC-------------------------------------------------------------------------------- | 6 | novel | |||||
| seed | ---------------------------------------------------------GGGUCGU-------------------------------- | 3 | novel | |||||
| seed | --------UUGGCUG--------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | --------------------------------------------CACUGAA--------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T4S2 | T5S1 | T5S2 | |||
| -------------TGCGAAGTGACCGTATCAGA--------------------------------------------------------------- | 20 | 1 | 1 | 2 | - | 28 | 1 | |
| ------------------------------------------------------------------------TAGGAGTCAAAGCTTGGTC----- | 19 | 3 | 2 | - | 1 | 24 | - | |
| --------TTGGCTGCGAAGTGACCGT--------------------------------------------------------------------- | 19 | 1 | - | - | - | 5 | - | |
| -------------TGCGAAGTGACCGTATCAG---------------------------------------------------------------- | 19 | - | - | - | - | 3 | - | |
| -------TTTGGCTGCGAAGTGACCGT--------------------------------------------------------------------- | 20 | - | 1 | - | - | 1 | - | |
| --------------------------------------------------------TGGGTCGTATTTGTGTTAGGAG------------------ | 22 | - | - | - | - | 1 | - | |
| --------------------------------------------------------TGGGTCGTATTTGTGTTAGGAGTC---------------- | 24 | - | - | - | - | 1 | - | |
| -------------------------------------------TCACTGAAAGTTTTGGGTC---------------------------------- | 19 | - | - | - | - | 1 | - | |
| --------------------------------------------------------TGGGTCGTATTTGTGTTAGGA------------------- | 21 | - | - | - | - | 1 | - | |
| rat | agggagatttggcTGCGAAGTGACCGTATCAGAtaagagtccatcactgaaagttttgggtcgtatttgtgtTAGGAGTCAAAGCTTGGTCccttg | |||||||
| ************************************************************************************************ | ||||||||
| rat | ((((.(((..((((..((.....((....((((((.((.((((..((.....))..)))))).)))))).....))..))..))))..))))))). | 0.750 -25.00 | ||||||
| rat | chromosome:20:5531992:5532087:-1 | intergenic |
sblock7859 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.694 | no | no | 0.28/0.55 | 18/21/0.13 | 0.0 0.0 | 0.3 0.0 | 242 2 | 0 0 | 2 1 | 0 0 | 16 8 | 22 27 | 5arm 3arm | 1 1 | nd nd | 0.37 0.40 | 4 4 | 278 | 3 | 6 | 7 |
| reads | miRBase family seed | ||||
| seed | -----------------UUCCGUU--------------------------------------------------------------------------------------------- | 275 | novel | ||
| seed | ------------------------------------------------------------------------------------------CUACUGG-------------------- | 2 | novel | ||
| seed | ------------------UCCGUUA-------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S1 | T4S2 | |||
| ----------------TTTCCGTTAAAGAAACAAC---------------------------------------------------------------------------------- | 19 | - | 53 | 113 | |
| ----------------TTTCCGTTAAAGAAACAA----------------------------------------------------------------------------------- | 18 | - | 36 | 40 | |
| ----------------TTTCCGTTAAAGAAACAACA--------------------------------------------------------------------------------- | 20 | - | 8 | 23 | |
| ----------------TTTCCGTTAAAGAAACAACAG-------------------------------------------------------------------------------- | 21 | - | - | 2 | |
| -----------------------------------------------------------------------------------------GCTACTGGGTCAGTTCAGAC-------- | 20 | 2 | - | - | |
| -----------------TTCCGTTAAAGAAACAAC---------------------------------------------------------------------------------- | 18 | - | 1 | - | |
| rat | tctataaccaaatgaaTTTCCGTTAAAGAAACAACagtcatagcttccttgaaaaggctggttcttttcttttctttttctgctgtgtggctactgggtcagttcagacgtgtagga | ||||
| ********************************************************************************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046815 ENSRNOG00000033117 | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000025501 ENSRNOG00000018832 D730039F16Rik | ||||
| rat | ((((((......((((((((((....((..((.(((((............(((((((.....)))))))............)))))))..))..))))..))))))....)))))). | 0.490 -21.95 | |||
| rat | chromosome:3:13884870:13884986:1 | Same_strand|Intronic_coding|ENSRNOT00000046815|ENSRNOG00000033117 ## Same_strand|Boundary_non-coding|ENSRNOT00000046927|ENSRNOG00000033117 ## ENSRNOG00000018832|protein_coding|D730039F16Rik|RIKEN cDNA D730039F16 gene Gene [Source:MGI Symbol;Acc:MGI:1925246] ## ENSRNOG00000033117|protein_coding|| |
sblock9336 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.385 | no | no | 0.26/0.52 | 19/26/0.67 | 0.0 0.0 2.0 | 1.4 0.0 2.0 | 31 2 3 | 0 0 0 | 6 1 1 | 0 0 0 | 14 31 17 | 12 2 10 | 5arm 3arm 3arm | 4 4 4 | nd nd nd | 0.47 0.42 0.42 | 7 6 4 | 51 | 6 | -9 | -16 |
| reads | miRBase family seed | |||||||
| seed | ---------------GGAUUUA-------------------------------------------------------------------------------------- | 43 | novel | |||||
| seed | ----------------GAUUUAU------------------------------------------------------------------------------------- | 3 | novel | |||||
| seed | -------------------------------------------------------------------GCAGCUC---------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------------UUUCUCC------------------------------------------ | 2 | novel | |||||
| seed | -------------------------------------------------------------------------CCAUAUA---------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T4S2 | T5S1 | |||
| --------------TGGATTTATTTACAGTTTGGAC------------------------------------------------------------------------ | 22 | - | - | 1 | - | - | 13 | |
| --------------TGGATTTATTTACAGTTTGGACA----------------------------------------------------------------------- | 23 | - | - | - | - | - | 8 | |
| --------------TGGATTTATTTACAGTTTGGACAAAA-------------------------------------------------------------------- | 26 | - | 1 | - | - | - | 6 | |
| --------------TGGATTTATTTACAGTTTG--------------------------------------------------------------------------- | 19 | 2 | - | - | - | - | 4 | |
| --------------TGGATTTATTTACAGTTTGG-------------------------------------------------------------------------- | 20 | - | - | - | 1 | 1 | 3 | |
| --------------TGGATTTATTTACAGTTTGGACAA---------------------------------------------------------------------- | 24 | - | - | - | - | - | 2 | |
| ----------------------------------------------------------TTTTCTCCTGCAGCTCCAT------------------------------- | 19 | - | - | - | - | - | 2 | |
| --------------TGGATTTATTTACAGTTTGGA------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------TGCAGCTCCATATAGTGTGTGCC------------------- | 23 | - | - | - | - | - | 1 | |
| ---------------GGATTTATTTACAGTTTGGAC------------------------------------------------------------------------ | 21 | - | - | - | - | - | 1 | |
| ---------------GGATTTATTTACAGTTTGGACA----------------------------------------------------------------------- | 22 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------TGCAGCTCCATATAGTGTGTG--------------------- | 21 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------TCCATATAGTGTGTGCCAC----------------- | 19 | - | - | - | - | - | 1 | |
| ---------------GGATTTATTTACAGTTTGGACAAAA-------------------------------------------------------------------- | 25 | - | - | - | - | - | 1 | |
| rat | ttggtaaagaaaaaTGGATTTATTTACAGTTTGGACAAAAtggaaagagatggagacattttctcctgcagctccatatagtgtgtgccacctttcatatgtgcacag | |||||||
| ************************************************************************************************************ | ||||||||
| rat | .(((((..((((..(((.......(((.((.((((......(((..((((((....)))))).)))......)))).)).)))....)))..)))).....))).)). | 0.590 -21.70 | ||||||
| rat | chromosome:5:75287426:75287533:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (6 loci)
block208611 [novel_lenNOK_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.37/0.54 | 18/25/0.14 | 0.0 0.0 | 0.0 1.3 | 33 3 | 0 0 | 7 2 | 0 0 | 30 37 | -10 -21 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.74 0.65 | 11 12 | 57 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -------------------------------CACUCAG---------------------------------------- | 45 | novel | ||||||
| seed | ----------------------GCAAACG------------------------------------------------- | 8 | novel | ||||||
| seed | --------------------------------------ACUCAGC--------------------------------- | 3 | novel | ||||||
| seed | ---------------------UGCAAAC-------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| ------------------------------TCACTCAGACTCAGCAAAT----------------------------- | 19 | 5 | 3 | 1 | 2 | - | - | 33 | |
| ---------------------TGCAAACGCTCACTCAGACTCAG---------------------------------- | 23 | 1 | - | - | - | - | 1 | 2 | |
| -------------------------------------GACTCAGCAAATATTCAAG---------------------- | 19 | - | - | - | - | - | - | 2 | |
| ---------------------TGCAAACGCTCACTCAGAC-------------------------------------- | 19 | - | - | - | - | 1 | - | - | |
| -------------------------------------GACTCAGCAAATATTCAAGGGAG------------------ | 23 | 1 | - | - | - | - | - | - | |
| --------------------CTGCAAACGCTCACTCAGACTCAG---------------------------------- | 24 | - | 1 | - | - | - | - | - | |
| ------------------------------TCACTCAGACTCAGCAAA------------------------------ | 18 | - | - | - | - | - | - | 1 | |
| ---------------------TGCAAACGCTCACTCAGACTCAGCA-------------------------------- | 25 | - | - | - | - | - | - | 1 | |
| ---------------------TGCAAACGCTCACTCAGACTCA----------------------------------- | 22 | - | - | - | - | - | - | 1 | |
| ---------------------TGCAAACGCTCACTCAGACTC------------------------------------ | 21 | 1 | - | - | - | - | - | - | |
| rat | ggtgaggaaagagtgggggtctgcaaacgcTCACTCAGACTCAGCAAATattcaagggagggtgcaggctcccagcca | ||||||||
| ****************************************************************************** | |||||||||
| rat | (((..........(((((((((((..((.(((.((..((............))..))))).)))))))))))))))). | 0.530 -26.50 | |||||||
| rat | chromosome:12:5598258:5598335:1 | intergenic |
block1013850 [novel_lenNOK_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.011 | no | no | 0.60/0.63 | 18/20/0.08 | 0.0 0.0 | 0.7 0.3 | 3 46 | 0 0 | 3 10 | 0 0 | 8 13 | -5 -10 | 5arm_loop_3arm 5arm_loop_3arm | 1 1 | nd nd | 0.37 0.44 | 4 4 | 89 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------UCCCUGG--------------------------------- | 86 | novel | |||||||||
| seed | ---------GGGAGUC-------------------------------------- | 3 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------GTCCCTGGGGAAACTTGG----------------------- | 18 | 6 | 1 | 1 | 2 | 2 | 1 | 2 | 19 | 5 | 7 | |
| -------------GTCCCTGGGGAAACTTGGG---------------------- | 19 | - | 3 | 1 | 2 | 3 | 2 | 4 | 14 | 2 | 2 | |
| -------------GTCCCTGGGGAAACTTGGGT--------------------- | 20 | - | - | 1 | - | 1 | 1 | 2 | - | 2 | - | |
| --------TGGGAGTCCCTGGGGAAAC--------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | 1 | |
| --------TGGGAGTCCCTGGGGAAA---------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| rat | tccttgcatgggaGTCCCTGGGGAAACTTGGGtgctgacttcaacaggctggga | |||||||||||
| ****************************************************** | ||||||||||||
| rat | ((((.((...((((((((..((....))..))....)))))).....)).)))) | 1.000 -23.10 | ||||||||||
| rat | chromosome:1:167814062:167814115:1 | intergenic |
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