other hairpins
novel_lenNOK_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (6 loci)
block1600475 [novel_lenNOK_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.063 | no | no | 0.32/0.60 | 19/24/0.57 | 0.0 0.0 | 0.0 0.0 | 22 18 | 0 0 | 3 5 | 0 0 | 6 18 | -7 -17 | 5arm_loop_3arm 5arm_loop_3arm | 1 1 | nd nd | 0.52 0.58 | 8 11 | 61 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -------GACUCGC--------------------------------- | 24 | novel | ||||||
| seed | -------------------GAUACUC--------------------- | 21 | novel | ||||||
| seed | -----------CGCCACU----------------------------- | 4 | novel | ||||||
| seed | ------------------UGAUACU---------------------- | 4 | novel | ||||||
| seed | ------------GCCACUU---------------------------- | 3 | novel | ||||||
| seed | -----CUGACUC----------------------------------- | 2 | novel | ||||||
| seed | --GCUCUGA-------------------------------------- | 1 | novel | ||||||
| seed | -GGCUCUG--------------------------------------- | 1 | miR-760 | ||||||
| seed | --------------CACUUGA-------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| ------TGACTCGCCACTTGATACTCT-------------------- | 21 | 1 | 1 | - | - | - | 22 | - | |
| ------------------TGATACTCTATGACAATGG---------- | 19 | - | - | - | 1 | 1 | 18 | 1 | |
| -----------------TTGATACTCTATGACAATG----------- | 19 | - | - | 1 | - | - | 3 | - | |
| ----TCTGACTCGCCACTTGATACTCT-------------------- | 23 | - | 1 | - | - | - | 1 | - | |
| ----------TCGCCACTTGATACTCTATGACA-------------- | 23 | - | - | - | - | - | 2 | - | |
| -----------CGCCACTTGATACTCTATGACA-------------- | 22 | - | 1 | - | - | - | 1 | - | |
| ----------TCGCCACTTGATACTCTATGAC--------------- | 22 | - | - | - | - | - | 1 | - | |
| -----------CGCCACTTGATACTCTATGACAA------------- | 23 | - | - | - | - | - | 1 | - | |
| -------------CCACTTGATACTCTATGAC--------------- | 19 | - | - | - | - | - | 1 | - | |
| -GGCTCTGACTCGCCACTTGA-------------------------- | 20 | - | - | - | - | - | 1 | - | |
| TGGCTCTGACTCGCCACTTGA-------------------------- | 21 | - | - | - | - | - | 1 | - | |
| ----------TCGCCACTTGATACTCTATGACAA------------- | 24 | - | - | - | - | - | 1 | - | |
| rat | tggctcTGACTCGCCACTTGATACTCTATGACAATGGcctgtcacca | ||||||||
| *********************************************** | |||||||||
| rat | .((...((((..((((.(((...........)))))))..)))))). | 0.890 -11.00 | |||||||
| rat | chromosome:4:164239417:164239463:-1 | intergenic |
sblock1258 [novel_lenNOK_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.442 | no | no | 0.37/0.52 | 18/24/0.04 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 3 236 1 | 0 0 0 | 1 5 1 | 0 0 0 | 0 38 10 | 21 -16 16 | 5arm 3arm_loop 3arm | 2 2 2 | nd nd nd | 0.35 0.37 0.42 | 5 4 5 | 270 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------GCCAUUG-------------------------------------------- | 262 | novel | ||||
| seed | -CCAAGCC---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -------------------------------------CUGCCAU---------------------------------------------- | 3 | novel | ||||
| seed | --------------------------------------------------------------GACAUGG--------------------- | 1 | novel | ||||
| seed | ---------------------------------------------GCAGAAG-------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T5S1 | T5S2 | |||
| --------------------------------------TGCCATTGCAGAAGGAAGT--------------------------------- | 19 | 13 | 4 | 1 | 236 | 3 | |
| ------------------------------------CCTGCCATTGCAGAAGGAAGT--------------------------------- | 21 | - | - | - | 3 | - | |
| TCCAAGCCTATGTTTTGTTG---------------------------------------------------------------------- | 20 | - | - | - | 3 | - | |
| --------------------------------------TGCCATTGCAGAAGGAAGTAGGA----------------------------- | 23 | - | - | - | 1 | 1 | |
| --------------------------------------TGCCATTGCAGAAGGAAGTA-------------------------------- | 20 | - | - | - | 1 | - | |
| --------------------------------------------TGCAGAAGGAAGTAGGATG--------------------------- | 19 | - | - | - | 1 | - | |
| --------------------------------------TGCCATTGCAGAAGGAAG---------------------------------- | 18 | - | - | - | 1 | - | |
| --------------------------------------TGCCATTGCAGAAGGAAGTAGGAT---------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------------------------------TGACATGGTCTGGTTAATA---------- | 19 | - | - | - | 1 | - | |
| rat | tccaagcctatgttttgttgccttgcccctgaacttccTGCCATTGCAGAAGGAAGTaggatgacatggtctggttaatatattgtctgg | ||||||
| ****************************************************************************************** | |||||||
| rat | .(((.((.((((((.....(((..((((((..(((((((((....)))...))))))))).......)))..))).))))))..)).))) | 0.660 -20.61 | |||||
| rat | chromosome:1:47742562:47742651:1 | intergenic |
sblock1318 [novel_lenNOK_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.839 | no | no | 0.40/0.52 | 18/24/0.04 | 0.0 0.0 | 0.0 0.0 | 3 236 | 0 0 | 1 5 | 0 0 | 0 38 | 21 -16 | 5arm 3arm_loop | 2 2 | nd nd | 0.40 0.37 | 5 4 | 269 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------GCCAUUG-------------------------------------------- | 262 | novel | ||||
| seed | -CCAAGCC---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -------------------------------------CUGCCAU---------------------------------------------- | 3 | novel | ||||
| seed | ---------------------------------------------GCAGAAG-------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T5S1 | T5S2 | |||
| --------------------------------------TGCCATTGCAGAAGGAAGT--------------------------------- | 19 | 13 | 4 | 1 | 236 | 3 | |
| ------------------------------------CCTGCCATTGCAGAAGGAAGT--------------------------------- | 21 | - | - | - | 3 | - | |
| TCCAAGCCTATGTTTTGTTG---------------------------------------------------------------------- | 20 | - | - | - | 3 | - | |
| --------------------------------------TGCCATTGCAGAAGGAAGTAGGA----------------------------- | 23 | - | - | - | 1 | 1 | |
| --------------------------------------TGCCATTGCAGAAGGAAGTA-------------------------------- | 20 | - | - | - | 1 | - | |
| --------------------------------------------TGCAGAAGGAAGTAGGATG--------------------------- | 19 | - | - | - | 1 | - | |
| --------------------------------------TGCCATTGCAGAAGGAAG---------------------------------- | 18 | - | - | - | 1 | - | |
| --------------------------------------TGCCATTGCAGAAGGAAGTAGGAT---------------------------- | 24 | - | - | - | 1 | - | |
| rat | tccaagcctatgttttgttgccttgcccctgaacttccTGCCATTGCAGAAGGAAGTaggatgatatggtctgattaatacattatctgg | ||||||
| ****************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | ||||||
| rat | .(((.....((((...((((((.....(((..(((((((((....)))...))))))))).......)))..)))....))))....))) | 0.710 -15.80 | |||||
| rat | chromosome:1:47863138:47863227:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock6731 [novel_lenNOK_cloningHIGH_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.078 | no | no | 0.36/0.53 | 18/26/0.59 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.4 | 5 1 1 5 53 | 0 0 0 0 0 | 1 1 1 2 10 | 0 0 0 0 0 | 0 7 20 34 15 | 17 8 -3 -21 -8 | 5arm 5arm 5arm_loop 5arm_loop_3arm 3arm_loop | 1 1 1 1 1 | nd nd nd nd nd | 0.40 0.45 0.45 0.62 0.40 | 5 5 4 14 7 | 118 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------------CCCAUAC--------------------------- | 105 | novel | |||||||||
| seed | -----------------------------------ACUCAAU------------------------------------ | 5 | novel | |||||||||
| seed | -GCCCCAU---------------------------------------------------------------------- | 5 | novel | |||||||||
| seed | --------GUUUAGC--------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------------------CCAUACG-------------------------- | 1 | novel | |||||||||
| seed | ---------------------ACUGAAA-------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------TCCCATACGTCTTTGCGAGT--------------- | 20 | 2 | 2 | - | 1 | - | 1 | 1 | - | 31 | 2 | |
| -------------------------------------------TCCCATACGTCTTTGCGAG---------------- | 19 | - | - | 3 | 2 | 1 | 1 | 4 | 2 | 22 | 3 | |
| -------------------------------------------TCCCATACGTCTTTGCGAGTTTTC----------- | 24 | 2 | - | - | - | - | - | - | - | 8 | - | |
| -------------------------------------------TCCCATACGTCTTTGCGAGTTTT------------ | 23 | - | 1 | - | 1 | - | - | - | - | 5 | - | |
| -------------------------------------------TCCCATACGTCTTTGCGA----------------- | 18 | - | - | - | 2 | - | 1 | 1 | - | 2 | - | |
| TGCCCCATGTTTAGCAGAGA---------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 5 | - | |
| ----------------------------------TACTCAATTTCCCATACGTCTTTG-------------------- | 24 | 3 | - | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------TCCCATACGTCTTTGCGAGTTTTCT---------- | 25 | 1 | - | - | - | - | - | 1 | - | 1 | - | |
| -------TGTTTAGCAGAGATACTGAAAC------------------------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------TCCCATACGTCTTTGCGAGTTTTCTG--------- | 26 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------TACTGAAACGCAGATACTCA-------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------CCCATACGTCTTTGCGAGTTTTC----------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | tgccccatgtttagcagagatactgaaacgcagatactcaattTCCCATACGTCTTTGCGAGTtttctgatcagggga | |||||||||||
| ****************************************************************************** | ||||||||||||
| rat | ..((((.((.....((((((.(((....((((((.((..............)).)))))))))))))))..)))))). | 0.950 -20.34 | ||||||||||
| rat | chromosome:20:5515170:5515247:-1 | intergenic |
novel_lenNOK_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (6 loci)
block424586 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.083 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 126 | 0 | 3 | 0 | 4 | -1 | 3arm_loop | 1 | nd | 0.33 | 4 | 127 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------GGAAUGU-------------- | 127 | miR-1/206 | ||
| len | cloning frequencies | ||||
| T2S1 | T4S1 | T4S2 | |||
| ---------------------------TGGAATGTAAAGTTCTCA---- | 18 | 1 | 33 | 93 | |
| rat | gttttgaaggcgattgttctcttccacTGGAATGTAAAGTTCTCAagac | ||||
| ************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000008210 ENSRNOG00000005434 Spnb2 | ||||
| rat | (((((((..((...((((((........))))))....))..))))))) | 0.990 -11.50 | |||
| rat | chromosome:14:111146854:111146902:1 | Same_strand|Boundary_non-coding|ENSRNOT00000008300|ENSRNOG00000005434 ## Same_strand|Intronic_coding|ENSRNOT00000008210|ENSRNOG00000005434 ## ENSRNOG00000005434|protein_coding|Spnb2|spectrin beta 2 [Source:RefSeq_peptide;Acc:NP_001013148] |
block1276988 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.075 | no | no | 0.30/0.33 | 18/21/0.01 | 0.0 | 0.0 | 1629 | 0 | 10 | 0 | 3 | -2 | 3arm_loop | 1 | nd | 0.44 | 4 | 2175 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------UGUGCUU------------- | 2173 | miR-218 | |||||||||
| seed | ------------------------GUGCUUG------------ | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------TTGTGCTTGATCTAAAAC--- | 18 | 1047 | 582 | 38 | 9 | 4 | 12 | 12 | 12 | 127 | 103 | |
| ----------------------TTGTGCTTGATCTAAAACA-- | 19 | 96 | 77 | 8 | 1 | - | 1 | - | 2 | 11 | 12 | |
| ----------------------TTGTGCTTGATCTAAAACAT- | 20 | 14 | 3 | - | - | - | 1 | - | - | - | - | |
| -----------------------TGTGCTTGATCTAAAACAT- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------TTGTGCTTGATCTAAAACATC | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------TGTGCTTGATCTAAAACA-- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | gatttattagggcaacactcatTTGTGCTTGATCTAAAACatc | |||||||||||
| ******************************************* | ||||||||||||
| rat | ......((((..((((((......))).)))..))))...... | 1.000 -8.10 | ||||||||||
| rat | chromosome:2:99126669:99126711:1 | intergenic |
block1383968 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.064 | no | no | 0.56/0.61 | 18/19/0.00 | 0.2 | 0.0 | 64 | 0 | 10 | 0 | 4 | -3 | 5arm_loop | 1 | nd | 0.56 | 4 | 107 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----UCCUGCU-------------------------------- | 71 | novel | |||||||||
| seed | ------CCUGCUC------------------------------- | 36 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----ATCCTGCTCACAGAGCCAC--------------------- | 19 | 4 | 9 | 4 | 6 | 14 | 7 | 5 | 4 | 3 | 8 | |
| -----TCCTGCTCACAGAGCCAC--------------------- | 18 | 4 | 3 | 1 | 1 | 8 | 7 | 1 | 4 | 3 | 4 | |
| ----ATCCTGCTCACAGAGCCA---------------------- | 18 | 3 | - | 1 | 1 | - | - | - | - | - | 2 | |
| rat | gcaaATCCTGCTCACAGAGCCACtgctctacctgcgaatcctgc | |||||||||||
| ******************************************** | ||||||||||||
| ------------------------------------------------------ | ENSRNOT00000045644 ENSRNOG00000017422 Nyw1 | |||||||||||
| ------------------------------------------------------ | ENSRNOT00000023479 ENSRNOG00000017422 Nyw1 | |||||||||||
| rat | (((.....(((....(((((....)))))....))).....))) | 0.950 -9.30 | ||||||||||
| rat | chromosome:3:76292870:76292913:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000048605|ENSRNOG00000017422 ## Opposite_strand|Intronic_coding|ENSRNOT00000045644|ENSRNOG00000017422 ## ENSRNOG00000017422|protein_coding|Nyw1|Ischemia related factor NYW-1. [Source:UniProtKB/TrEMBL;Acc:Q9WTT0] |
block1491303 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.244 | no | no | 0.43/0.50 | 18/22/0.48 | 0.0 | 0.6 | 73 | 0 | 10 | 0 | 2 | -5 | 5arm_loop | 1 | nd | 0.33 | 4 | 109 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ---AAAGUGA--------------------------------------------------- | 109 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --CAAAGTGAGGCAGACATCTT--------------------------------------- | 20 | 1 | - | - | 1 | 22 | 16 | - | 1 | 2 | 2 | |
| --CAAAGTGAGGCAGACATCT---------------------------------------- | 19 | 2 | - | - | 3 | 13 | 15 | 1 | 1 | 4 | 3 | |
| --CAAAGTGAGGCAGACATC----------------------------------------- | 18 | 1 | 1 | 1 | - | 3 | 7 | 1 | - | 1 | - | |
| --CAAAGTGAGGCAGACATCTTAC------------------------------------- | 22 | - | - | - | 1 | 3 | 2 | - | - | - | - | |
| --CAAAGTGAGGCAGACATCTTA-------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| rat | taCAAAGTGAGGCAGACATCTTacctcgaactagtctgcacagtatatcaaattaatttgt | |||||||||||
| ************************************************************* | ||||||||||||
| rat | .(((((.(((.((((((................))))))........)))......))))) | 0.790 -9.19 | ||||||||||
| rat | chromosome:3:121433404:121433464:1 | intergenic |
block1537292 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.049 | no | no | 0.44/0.50 | 18/20/0.02 | 0.0 | 0.0 | 378 | 0 | 10 | 0 | 1 | -2 | 3arm_loop | 1 | nd | 0.32 | 4 | 446 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----------------GCAGCAA------------ | 441 | novel | |||||||||
| seed | ----------------AGCAGCA------------- | 5 | miR-15b/16/195/322/497 | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------AGCAGCAAACATGTCCTGA- | 19 | 76 | 70 | 6 | 23 | 25 | 36 | 11 | 34 | 63 | 51 | |
| ----------------AGCAGCAAACATGTCCTG-- | 18 | 11 | 9 | - | 3 | 3 | 4 | 1 | 6 | 1 | 4 | |
| ----------------AGCAGCAAACATGTCCTGAG | 20 | 2 | 1 | - | - | - | - | 1 | - | - | - | |
| ---------------TAGCAGCAAACATGTCCTGA- | 20 | 2 | - | - | - | - | - | - | - | - | 1 | |
| ---------------TAGCAGCAAACATGTCCTG-- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------TAGCAGCAAACATGTCCT--- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | ctcctatgtttctgctAGCAGCAAACATGTCCTGAg | |||||||||||
| ************************************ | ||||||||||||
| rat | (((.((((((((((....))).)))))))....))) | 1.000 -8.30 | ||||||||||
| rat | chromosome:4:41129437:41129472:-1 | intergenic |
block2136356 [novel_lenNOK_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.131 | no | no | 0.37/0.40 | 18/20/0.05 | 0.0 | 0.0 | 46 | 0 | 10 | 0 | 1 | -3 | 5arm_loop | 1 | nd | 0.44 | 4 | 78 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --GUUCUUC-------------------------------- | 78 | miR-22* | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -AGTTCTTCAGTGGCAAAT---------------------- | 18 | 6 | 6 | 3 | 14 | 8 | 2 | 3 | 12 | 2 | 4 | |
| -AGTTCTTCAGTGGCAAATT--------------------- | 19 | 4 | - | 2 | 1 | - | 4 | - | 2 | - | 1 | |
| -AGTTCTTCAGTGGCAAATTC-------------------- | 20 | - | - | 1 | 2 | - | - | - | - | - | 1 | |
| rat | cAGTTCTTCAGTGGCAAATtcaatggcacagtcaagactga | |||||||||||
| ***************************************** | ||||||||||||
| rat | (((.((((..(((.((.......)).)))....))))))). | 1.000 -8.30 | ||||||||||
| rat | chromosome:7:89763111:89763151:-1 | intergenic |
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