other hairpins
novel_lenNOK_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (6 loci)
novel_lenNOK_cloningOK_Multihit_bulgeHIGH (6 loci)
block965162 [novel_lenNOK_cloningOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.365 | no | no | 0.47/0.58 | 19/23/0.69 | 0.0 | 0.0 | 8 | 0 | 2 | 0 | 16 | 0 | 3arm_loop | 23 | nd | 0.30 | 6 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------CUGUCUC------------------------------- | 8 | novel | |
| seed | --------------------------------------------------CCUCUGU---------------------------------- | 3 | novel | |
| seed | -------------------------------------------------------GUCUCAG----------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------------------------TCTGTCTCAGACCCTCCAAATTG---------------- | 23 | - | 8 | |
| ------------------------------------------------------TGTCTCAGACCCTCCAAAT------------------ | 19 | - | 2 | |
| -------------------------------------------------TCCTCTGTCTCAGACCCTC----------------------- | 19 | 2 | - | |
| -------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA------------------- | 23 | - | 1 | |
| rat | ccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGcaagacctttatgggc | |||
| ******************************************************************************************* | ||||
| ----------------------------------------------------------------------------------------------------- | ENSRNOT00000059909 ENSRNOG00000030267 RGD1561185_predicted | |||
| ----------------------------------------------------------------------------------------------------- | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | |||
| rat | ((.((...(((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........))))).)))). | 0.780 -23.15 | ||
| rat | chromosome:1:52749347:52749437:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000048991|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
block965616 [novel_lenNOK_cloningOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.47/0.58 | 19/23/0.69 | 0.0 | 0.0 | 8 | 0 | 2 | 0 | 22 | 0 | 3arm_loop | 23 | nd | 0.30 | 6 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------CUGUCUC------------------------------------- | 8 | novel | |
| seed | ---------------------------------------------------CCUCUGU---------------------------------------- | 3 | novel | |
| seed | --------------------------------------------------------GUCUCAG----------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------TCTGTCTCAGACCCTCCAAATTG---------------------- | 23 | - | 8 | |
| -------------------------------------------------------TGTCTCAGACCCTCCAAAT------------------------ | 19 | - | 2 | |
| --------------------------------------------------TCCTCTGTCTCAGACCCTC----------------------------- | 19 | 2 | - | |
| --------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA------------------------- | 23 | - | 1 | |
| rat | tccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGcaagacctttacaggcactgga | |||
| ************************************************************************************************** | ||||
| rat | ((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))) | 0.860 -26.15 | ||
| rat | chromosome:1:52861218:52861315:1 | intergenic |
block963502 [novel_lenNOK_cloningOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.212 | no | no | 0.47/0.58 | 19/23/0.69 | 0.0 | 0.0 | 8 | 0 | 2 | 0 | 27 | 0 | 3arm_loop | 23 | nd | 0.30 | 6 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------CUGUCUC------------------------------------------ | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU--------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG---------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG--------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC---------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT----------------------------- | 19 | - | 2 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA------------------------------ | 23 | - | 1 | |
| rat | gacctctacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGcaagacctttacgggcactggaagtca | |||
| *********************************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| --------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))). | 0.900 -29.55 | ||
| rat | chromosome:1:51820521:51820627:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_coding|ENSRNOT00000048246|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block964114 [novel_lenNOK_cloningOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.170 | no | no | 0.47/0.58 | 19/23/0.69 | 0.0 | 0.0 | 8 | 0 | 2 | 0 | 27 | 0 | 3arm_loop | 23 | nd | 0.30 | 6 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------CUGUCUC------------------------------------------ | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU--------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG---------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG--------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC---------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT----------------------------- | 19 | - | 2 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA------------------------------ | 23 | - | 1 | |
| rat | gacctctacagtcaaaggaccaatattgtggtagggcttctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGcaagacctttacgggcactggaagtca | |||
| *********************************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))). | 0.980 -29.55 | ||
| rat | chromosome:1:52045223:52045329:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block845189 [novel_lenNOK_cloningOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.164 | no | no | 0.47/0.58 | 19/23/0.69 | 0.0 | 0.0 | 8 | 0 | 2 | 0 | 27 | 0 | 3arm_loop | 23 | nd | 0.30 | 6 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------CUGUCUC------------------------------------------ | 8 | novel | |
| seed | ------------------------------------------------------CCUCUGU--------------------------------------------- | 3 | novel | |
| seed | -----------------------------------------------------------GUCUCAG---------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG--------------------------- | 23 | - | 8 | |
| -----------------------------------------------------TCCTCTGTCTCAGACCCTC---------------------------------- | 19 | 2 | - | |
| ----------------------------------------------------------TGTCTCAGACCCTCCAAAT----------------------------- | 19 | - | 2 | |
| -----------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA------------------------------ | 23 | - | 1 | |
| rat | gacctccacagtcaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGcaagacctttacgggcactggaagtca | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..(((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........))))....)))..)))).))). | 0.830 -30.55 | ||
| rat | chromosome:1:50585750:50585855:-1 | intergenic |
block845220 [novel_lenNOK_cloningOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.164 | no | no | 0.47/0.58 | 19/23/0.69 | 0.0 | 0.0 | 8 | 0 | 2 | 0 | 27 | 0 | 3arm_loop | 23 | nd | 0.30 | 6 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------CUGUCUC------------------------------------------ | 8 | novel | |
| seed | ------------------------------------------------------CCUCUGU--------------------------------------------- | 3 | novel | |
| seed | -----------------------------------------------------------GUCUCAG---------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG--------------------------- | 23 | - | 8 | |
| -----------------------------------------------------TCCTCTGTCTCAGACCCTC---------------------------------- | 19 | 2 | - | |
| ----------------------------------------------------------TGTCTCAGACCCTCCAAAT----------------------------- | 19 | - | 2 | |
| -----------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA------------------------------ | 23 | - | 1 | |
| rat | gacctccacagtcaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGcaagacctttacgggcactggaagtca | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..(((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........))))....)))..)))).))). | 0.830 -30.55 | ||
| rat | chromosome:1:50587358:50587463:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap (6 loci)
block2644090 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.319 | no | no | 0.40/0.63 | 18/24/0.39 | 4.0 0.0 | 5.0 0.0 | 5 11 | 0 0 | 2 1 | 0 0 | 12 15 | -10 -1 | 5arm_loop_3arm 3arm_loop | 5 5 | nd nd | 0.32 0.21 | 3 2 | 23 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------------------------GAGCUAU-------------------------- | 13 | novel | |
| seed | ------------------CCUGUCG------------------------------------------- | 2 | novel | |
| seed | --------------------------------UCUGAGC----------------------------- | 2 | novel | |
| seed | ------------------------------------------AGUGAAC------------------- | 2 | novel | |
| seed | ---------------CAUCCUG---------------------------------------------- | 1 | novel | |
| seed | ---------------------GUCGGUU---------------------------------------- | 1 | novel | |
| seed | ----------------------------CCCUUCU--------------------------------- | 1 | novel | |
| seed | -------------CUCAUCC------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| ----------------------------------TGAGCTATAGTGAACAGGG--------------- | 19 | 11 | - | |
| -----------------------------------------TAGTGAACAGGGCAACCATGAG----- | 22 | 2 | - | |
| -------------------------------TTCTGAGCTATAGTGAACAG----------------- | 20 | 2 | - | |
| ------------GCTCATCCTGTCGGTTCCC------------------------------------- | 19 | 1 | - | |
| -----------------TCCTGTCGGTTCCCTTCTGA------------------------------- | 20 | 1 | - | |
| --------------TCATCCTGTCGGTTCCCTTCT--------------------------------- | 21 | - | 1 | |
| ----------------------------------TGAGCTATAGTGAACAGG---------------- | 18 | 1 | - | |
| ----------------------------------TGAGCTATAGTGAACAGGGCAACC---------- | 24 | 1 | - | |
| ---------------------------TCCCTTCTGAGCTATAGTGAA-------------------- | 21 | 1 | - | |
| -----------------TCCTGTCGGTTCCCTTCTGAG------------------------------ | 21 | 1 | - | |
| --------------------TGTCGGTTCCCTTCTGAGC----------------------------- | 19 | 1 | - | |
| rat | ccacatgtttgtgctcatcctgtcggttcccttcTGAGCTATAGTGAACAGGGcaaccatgagcctgg | |||
| ******************************************************************** | ||||
| rat | ...((((.((((.((..((((((.(((((......))))))))).))..)).)))).))))....... | 0.480 -17.60 | ||
| rat | chromosome:9:104948624:104948691:1 | intergenic |
block2551341 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.392 | no | no | 0.40/0.63 | 18/24/0.39 | 4.0 0.0 | 5.0 0.0 | 5 11 | 0 0 | 2 1 | 0 0 | 16 15 | -10 -1 | 5arm_loop_3arm 3arm_loop | 5 5 | nd nd | 0.32 0.21 | 3 2 | 23 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------GAGCUAU-------------------------- | 13 | novel | |
| seed | ----------------------CCUGUCG------------------------------------------- | 2 | novel | |
| seed | ------------------------------------UCUGAGC----------------------------- | 2 | novel | |
| seed | ----------------------------------------------AGUGAAC------------------- | 2 | novel | |
| seed | --------------------------------CCCUUCU--------------------------------- | 1 | novel | |
| seed | -----------------CUCAUCC------------------------------------------------ | 1 | novel | |
| seed | -------------------CAUCCUG---------------------------------------------- | 1 | novel | |
| seed | -------------------------GUCGGUU---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| --------------------------------------TGAGCTATAGTGAACAGGG--------------- | 19 | 11 | - | |
| -----------------------------------TTCTGAGCTATAGTGAACAG----------------- | 20 | 2 | - | |
| ---------------------------------------------TAGTGAACAGGGCAACCATGAG----- | 22 | 2 | - | |
| --------------------------------------TGAGCTATAGTGAACAGGGCAACC---------- | 24 | 1 | - | |
| -------------------------------TCCCTTCTGAGCTATAGTGAA-------------------- | 21 | 1 | - | |
| --------------------------------------TGAGCTATAGTGAACAGG---------------- | 18 | 1 | - | |
| ------------------------TGTCGGTTCCCTTCTGAGC----------------------------- | 19 | 1 | - | |
| ------------------TCATCCTGTCGGTTCCCTTCT--------------------------------- | 21 | - | 1 | |
| ---------------------TCCTGTCGGTTCCCTTCTGAG------------------------------ | 21 | 1 | - | |
| ---------------------TCCTGTCGGTTCCCTTCTGA------------------------------- | 20 | 1 | - | |
| ----------------GCTCATCCTGTCGGTTCCC------------------------------------- | 19 | 1 | - | |
| rat | cctcccacatgtttgtgctcatcctgtcggttcccttcTGAGCTATAGTGAACAGGGcaaccatgagcctgg | |||
| ************************************************************************ | ||||
| ---------------------------------------------------------------------------------- | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | |||
| rat | ....(((((((.((((.((..((((((.(((((......))))))))).))..)).)))).))))....))) | 0.490 -17.60 | ||
| rat | chromosome:9:105314095:105314166:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000047326|ENSRNOG00000037286 ## ENSRNOG00000037286|protein_coding|LOC367336| |
block1093957 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.048 | no | no | 0.42/0.52 | 18/24/0.53 | 1.5 2.3 3.1 | 0.0 1.5 3.6 | 2 6 7 | 0 0 0 | 1 1 3 | 0 0 0 | 18 28 8 | 0 -14 -4 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.26 0.35 0.16 | 2 4 2 | 15 | 3 | 2 | 2 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------GACAUGC--------------------------------- | 4 | novel | ||
| seed | ------------------------------------------------CAGAAUA--------------------- | 3 | novel | ||
| seed | -----------------------------GUGUCUU---------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------GCAUGCU---------------------------- | 2 | novel | ||
| seed | --------------------------------------------UGCUCAG------------------------- | 2 | novel | ||
| seed | ----------------------AGCCUCU----------------------------------------------- | 1 | novel | ||
| seed | -------------------AGUAGCC-------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S1 | |||
| -----------------------------------------------TCAGAATACAGGGTGCCACAG-------- | 21 | - | - | 3 | |
| -----------------------------------TGACATGCATGCTCAGAAT---------------------- | 19 | - | - | 3 | |
| -------------------------------------------ATGCTCAGAATACAGGGTG-------------- | 19 | - | - | 1 | |
| ----------------------------------------TGCATGCTCAGAATACAGG----------------- | 19 | 1 | - | - | |
| -------------------------------------------ATGCTCAGAATACAGGGTGCCAC---------- | 23 | - | - | 1 | |
| ------------------CAGTAGCCTCTGTGTCTTGACA------------------------------------ | 22 | - | - | 1 | |
| -----------------------------------TGACATGCATGCTCAGAA----------------------- | 18 | - | - | 1 | |
| ----------------------------TGTGTCTTGACATGCATGCTCAGA------------------------ | 24 | - | - | 1 | |
| ----------------------------TGTGTCTTGACATGCATGCT---------------------------- | 20 | - | - | 1 | |
| ---------------------TAGCCTCTGTGTCTTGACA------------------------------------ | 19 | - | - | 1 | |
| ----------------------------------------TGCATGCTCAGAATACAGGG---------------- | 20 | - | 1 | - | |
| rat | gtccccaggctggagcctCAGTAGCCTCTGTGTCTTGACATGCATGCTCAGAATACAGGGTGCCACAGctttggac | ||||
| **************************************************************************** | |||||
| rat | ((((..((((((..((.......(((.((((((..(((((....)).)))..)))))))))))..)))))).)))) | 0.820 -27.11 | |||
| rat | chromosome:20:5553905:5553980:1 | intergenic |
sblock1068 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.625 | no | no | 0.67/0.84 | 18/25/0.23 | 2.7 0.5 0.0 0.0 | 2.1 0.0 0.0 0.0 | 7 4 1 1 | 0 0 0 0 | 5 2 1 1 | 0 0 0 0 | 5 19 5 0 | -7 -13 5 10 | 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.37 0.42 0.22 0.24 | 3 3 2 2 | 13 | 6 | 2 | 3 |
| reads | miRBase family seed | |||||||
| seed | --------------------GAGCGCG------------------------------- | 3 | novel | |||||
| seed | ---------------GCGUGGA------------------------------------ | 2 | novel | |||||
| seed | ---------ACUGCAG------------------------------------------ | 1 | novel | |||||
| seed | -----------------------------------------CGCGUAA---------- | 1 | novel | |||||
| seed | ------------------------------------GGACGCG--------------- | 1 | novel | |||||
| seed | ----------------CGUGGAG----------------------------------- | 1 | novel | |||||
| seed | ------CUGACUG--------------------------------------------- | 1 | novel | |||||
| seed | ----------------------GCGCGAG----------------------------- | 1 | novel | |||||
| seed | -------------CAGCGUG-------------------------------------- | 1 | novel | |||||
| seed | --------------AGCGUGG------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T5S1 | T5S2 | |||
| -------------------GGAGCGCGAGCCGGGCAGGAC------------------ | 21 | - | - | 3 | - | - | - | |
| --------------AGCGTGGAGCGCGAGCCGG------------------------- | 19 | - | 2 | - | - | - | - | |
| -------------CAGCGTGGAGCGCGAGCC--------------------------- | 18 | - | - | - | 1 | - | - | |
| ----------------------------------------GCGCGTAAGCCCTTGCCG | 18 | - | - | - | 1 | - | - | |
| ---------------------AGCGCGAGCCGGGCAGGAC------------------ | 19 | - | - | - | - | - | 1 | |
| ------------GCAGCGTGGAGCGCGAGC---------------------------- | 18 | 1 | - | - | - | - | - | |
| -----GCTGACTGCAGCGTGGAGC---------------------------------- | 19 | - | - | 1 | - | - | - | |
| -----------------------------------AGGACGCGCGTAAGCCCT----- | 18 | - | - | - | 1 | - | - | |
| --------GACTGCAGCGTGGAGCGCGAGCCGG------------------------- | 25 | - | - | - | 1 | - | - | |
| ---------------GCGTGGAGCGCGAGCCGGG------------------------ | 19 | - | - | - | - | 1 | - | |
| rat | gcgggGCTGACTGCAGCGTGGAGCGCGAGCCGGGCAGGACGCGCGTAAGCCCTTGCCG | |||||||
| ********************************************************** | ||||||||
| rat | ((((((((.((.((.((((...((.((...)).))...)))))))).)))))).)).. | 0.740 -24.20 | ||||||
| rat | chromosome:1:245640439:245640496:-1 | intergenic ## {SimpF: 1 Eponine} |
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