other hairpins
novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap (6 loci)
sblock6735 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.220 | no | no | 0.42/0.60 | 19/26/0.09 | 0.0 3.5 0.7 0.0 0.0 | 0.0 0.5 3.2 0.0 0.0 | 1 2 6 1 1 | 0 0 0 0 0 | 1 1 4 1 1 | 0 0 0 0 0 | 24 22 6 5 0 | 0 -22 10 18 23 | 5arm 3arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.42 0.37 0.24 0.32 0.28 | 4 3 3 4 4 | 11 | 4 | 1 | 2 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------UUCCAAC------------------------ | 3 | novel | |||
| seed | ----------------------------------------------------------UCCAACU----------------------- | 2 | novel | |||
| seed | -----------------------------------------GGGAACC---------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------AUUCUGA---------------- | 1 | novel | |||
| seed | ------------------------------------------------AGGCAGC--------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------GACCCCC----------- | 1 | novel | |||
| seed | -----------------------------------------------------------CCAACUA---------------------- | 1 | novel | |||
| seed | -------------------------CCAAGAA-------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| --------------------------------------------------------CTTCCAACTATTCTGACCCCC----------- | 21 | - | - | 1 | - | |
| ---------------------------------------------------------TTCCAACTATTCTGACCCCCATTCT------ | 25 | - | - | 1 | - | |
| ----------------------------------------------------------------TATTCTGACCCCCATTCTA----- | 19 | - | - | - | 1 | |
| --------------------------------------------------------CTTCCAACTATTCTGACCC------------- | 19 | - | - | - | 1 | |
| ----------------------------------------TGGGAACCAGGCAGCCCTTCCAACT----------------------- | 25 | - | - | - | 1 | |
| ---------------------------------------------------------TTCCAACTATTCTGACCCC------------ | 19 | - | 1 | - | - | |
| --------------------------------------------------------CTTCCAACTATTCTGACCCCCATTCT------ | 26 | 1 | - | - | - | |
| -----------------------------------------------CAGGCAGCCCTTCCAACTA---------------------- | 19 | - | - | - | 1 | |
| ------------------------GCCAAGAACTTTGTCCTGG--------------------------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------------------------------------TGACCCCCATTCTATCTTG | 19 | - | - | 1 | - | |
| ----------------------------------------------------------TCCAACTATTCTGACCCCC----------- | 19 | - | - | - | 1 | |
| rat | cggggaaatgtgggggtagggggaGCCAAGAACTTTGTCCTGGGAACCAGGCAGCCCTTCCAACTATTCTGACCCCCATTCTATCTTG | |||||
| **************************************************************************************** | ||||||
| rat | (((((....((((((((.((((.((....(((..(((.(((((...))))))))...)))...)).)))).))))))))....))))) | 0.860 -28.50 | ||||
| rat | chromosome:20:5516735:5516822:-1 | intergenic |
sblock9426 [novel_lenNOK_cloningOK_multiarm_DicerOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.188 | no | no | 0.33/0.54 | 19/25/0.41 | 1.5 0.0 0.0 0.0 | 0.0 1.0 3.3 0.0 | 4 2 7 4 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 14 24 32 18 | 13 4 -5 15 | 5arm 5arm 3arm_loop 3arm | 1 1 2 2 | nd nd nd nd | 0.29 0.29 0.33 0.32 | 2 2 4 3 | 17 | 2 | 3 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------GAGAACA------------------------------------------------- | 7 | novel | |
| seed | -------------------------------------------------------------------------CAGAUAU----------------------------- | 4 | novel | |
| seed | ------------------UGAGACU------------------------------------------------------------------------------------ | 2 | novel | |
| seed | -------------------------UGAUUUC----------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------ACUUGAG--------------------------------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------------------------------------------------TCAGATATTCAACTTCAGG------------------ | 19 | - | 4 | |
| ----------------------------------------------------TGAGAACAGAGGACAGAGC-------------------------------------- | 19 | - | 3 | |
| ----------------------------------------------------TGAGAACAGAGGACAGAGCCTCAGA-------------------------------- | 25 | 1 | 2 | |
| -----------------TTGAGACTTGATTTCTTAGAG----------------------------------------------------------------------- | 21 | - | 2 | |
| --------------GACTTGAGACTTGATTTCTTAGAG----------------------------------------------------------------------- | 24 | - | 2 | |
| ------------------------TTGATTTCTTAGAGCTTCCTC---------------------------------------------------------------- | 21 | - | 1 | |
| ----------------------------------------------------TGAGAACAGAGGACAGAGCCTCAG--------------------------------- | 24 | - | 1 | |
| ------------------------TTGATTTCTTAGAGCTTCCTCCT-------------------------------------------------------------- | 23 | - | 1 | |
| rat | gactataaaggttaGACTTGAGACTTGATTTCTTAGAGcttcctcctatgtcTGAGAACAGAGGACAGAGCCTCAGATATTCAACTTCAGGgcttcatcccatttgttg | |||
| ************************************************************************************************************* | ||||
| rat | (((......((..((.((((((..((((..(((.((.((((..((((.(((......))).))))..)))))).)))...)))).)))))).))....)).....))). | 0.830 -25.60 | ||
| rat | chromosome:5:114555166:114555274:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH (6 loci)
block2140251 [novel_lenNOK_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.707 | no | no | 0.21/0.50 | 19/22/0.62 | 0.3 0.0 0.0 | 0.0 1.3 0.0 | 6 3 1 | 0 0 0 | 5 2 1 | 0 0 0 | 11 17 26 | 10 2 -5 | 5arm 5arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.60 0.40 0.50 | 8 4 4 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------GCCCCUG---------------------------------------------------------------------- | 5 | novel | ||||
| seed | -------------CCCCUGC--------------------------------------------------------------------- | 4 | novel | ||||
| seed | ------------------GCUUAUU---------------------------------------------------------------- | 3 | novel | ||||
| seed | ---------------------------UUCAAUU------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------GGCCCCTGCTTATTCTTTCA---------------------------------------------------------- | 20 | - | - | - | 4 | 1 | |
| ------------GCCCCTGCTTATTCTTTCA---------------------------------------------------------- | 19 | 1 | 1 | 2 | - | - | |
| -----------------TGCTTATTCTTTCAATTAT----------------------------------------------------- | 19 | - | 1 | - | - | - | |
| -----------------TGCTTATTCTTTCAATTATG---------------------------------------------------- | 20 | - | - | - | 1 | - | |
| -----------------TGCTTATTCTTTCAATTATGTC-------------------------------------------------- | 22 | - | - | - | 1 | - | |
| --------------------------TTTCAATTATGTCCTGCACA------------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | gtttatcatgaGGCCCCTGCTTATTCTTTCAattatgtcctgcacagtacgagtattggagtatcactgtgacctcatcctagaaaaac | ||||||
| ***************************************************************************************** | |||||||
| rat | .((((..((((((........((((((....(((.(((.((....)).))))))...)))))).........))))))..))))..... | 0.640 -12.73 | |||||
| rat | chromosome:7:96033304:96033392:-1 | intergenic |
block1469879 [novel_lenNOK_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.472 | no | no | 0.42/0.60 | 19/25/0.46 | 0.0 0.0 | 0.0 2.0 | 1 6 | 0 0 | 1 2 | 0 0 | 42 24 | -18 0 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.45 0.37 | 5 4 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------CCAGUGC----------------------------------------- | 7 | novel | |
| seed | ------------------------------------------------------AGUGCUG--------------------------------------- | 3 | novel | |
| seed | -------------------------------------------GGGUAGU-------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------CAGUGCU---------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------UUCCAGU------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------TCCAGTGCTGTGATTTGCCCCCAAC------------------------ | 25 | - | 4 | |
| ---------------------------------------------------TCCAGTGCTGTGATTTGCC------------------------------ | 19 | - | 2 | |
| ------------------------------------------TGGGTAGTTTCCAGTGCTGTGA------------------------------------ | 22 | - | 1 | |
| -------------------------------------------------TTTCCAGTGCTGTGATTTG-------------------------------- | 19 | 1 | - | |
| -----------------------------------------------------CAGTGCTGTGATTTGCCCCCAAC------------------------ | 23 | - | 1 | |
| -----------------------------------------------------CAGTGCTGTGATTTGCCCCCAACA----------------------- | 24 | - | 1 | |
| -----------------------------------------------------CAGTGCTGTGATTTGCCCCC--------------------------- | 20 | - | 1 | |
| ---------------------------------------------------TCCAGTGCTGTGATTTGCCCCC--------------------------- | 22 | - | 1 | |
| ----------------------------------------------------CCAGTGCTGTGATTTGCCCCCAAC------------------------ | 24 | - | 1 | |
| rat | ctcactccggcatgctacttacatctctagcaaaaccacctctgggtagttTCCAGTGCTGTGATTTGCCCCCAACatgtgaagcttatgggactttggg | |||
| **************************************************************************************************** | ||||
| rat | ((((.((((....(((..((((((.....(((((..(((..(((((.....)))))....))).))))).......)))))))))...))))....)))) | 0.700 -21.40 | ||
| rat | chromosome:3:76957877:76957976:1 | intergenic |
sblock1267 [novel_lenNOK_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.570 | no | no | 0.32/0.53 | 18/22/0.45 | 0.0 0.4 1.5 0.0 0.0 | 0.6 0.9 1.0 0.0 0.0 | 5 18 2 1 1 | 0 0 0 0 0 | 2 3 1 1 1 | 0 0 0 0 0 | 8 16 41 13 5 | 26 19 -5 24 30 | 5arm 5arm 3arm_loop 3arm 3arm | 6 7 7 9 9 | nd nd nd nd nd | 0.59 0.42 0.39 0.50 0.59 | 8 4 5 5 9 | 33 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------UCCACAA---------------------------------------------------------------------------------------------- | 13 | novel | |||
| seed | ------------------CCACAAU--------------------------------------------------------------------------------------------- | 10 | novel | |||
| seed | ---------CUAUUUC------------------------------------------------------------------------------------------------------ | 5 | novel | |||
| seed | -------------------CACAAUU-------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------------------------------AACCAGG------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------AGGGAUU--------------------------------------------------- | 1 | miR-541 | |||
| seed | --------------------------------------------------------------------------------------UCCUUUA------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------CAUAGGG------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| ----------------TTCCACAATTGCAGGGTCT----------------------------------------------------------------------------------- | 19 | - | - | 1 | 10 | |
| -----------------TCCACAATTGCAGGGTCTAG--------------------------------------------------------------------------------- | 20 | - | 2 | - | 8 | |
| --------TCTATTTCTTCCACAATTG------------------------------------------------------------------------------------------- | 19 | 1 | - | - | 3 | |
| ----------------TTCCACAATTGCAGGGTCTAG--------------------------------------------------------------------------------- | 21 | - | - | - | 2 | |
| --------TCTATTTCTTCCACAATTGCAG---------------------------------------------------------------------------------------- | 22 | - | - | - | 1 | |
| -----------------------------------------------------------TAGGGATTTGGGAAAGCC----------------------------------------- | 18 | - | - | - | 1 | |
| -------------------------------------------------------------------------------------TTCCTTTAACCAGGGGTACA------------- | 20 | 1 | - | - | - | |
| --------------------------------------------------------TCATAGGGATTTGGGAAAG------------------------------------------- | 19 | - | - | - | 1 | |
| -------------------------------------------------------------------------------------------TAACCAGGGGTACATCATCACA----- | 22 | 1 | - | - | - | |
| ------------------CCACAATTGCAGGGTCTAG--------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| rat | cagtatgtTCTATTTCTTCCACAATTGCAGGGTCTAGcctgacagagctcagtccttcatagggatttgggaaagcctttcagtcttcctttaaccaggggtacatcatcacatctgt | |||||
| ********************************************************************************************************************** | ||||||
| rat | (((.((((.........(((....(((.((((...((.((((.((..(((((((((.....)))))).))).....)).)))).)).)))))))....))).........))))))). | 0.480 -24.07 | ||||
| rat | chromosome:1:47745687:47745804:1 | intergenic |
sblock3194 [novel_lenNOK_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.287 | no | no | 0.39/0.47 | 18/19/0.00 | 0.0 0.0 | 0.4 0.0 | 9 1 | 0 0 | 5 1 | 0 0 | 25 8 | 4 19 | 5arm 3arm | 1 1 | nd nd | 0.39 0.33 | 4 4 | 10 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------------------GGAGACA---------------------------------------------------------------- | 9 | novel | ||||
| seed | ------------------------------------------------------------------------UCUUUCU------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------------TGGAGACAAAGTGACTTCC----------------------------------------------------- | 19 | 2 | 1 | - | 2 | - | |
| -------------------------TGGAGACAAAGTGACTTC------------------------------------------------------ | 18 | 1 | 1 | 1 | - | 1 | |
| -----------------------------------------------------------------------GTCTTTCTATGCAAGAAC-------- | 18 | - | - | 1 | - | - | |
| rat | cgctgggttttagcattcagcagaaTGGAGACAAAGTGACTTCCtattgccgaatggaaggaaactctcaaGTCTTTCTATGCAAGAACattcctgc | ||||||
| ************************************************************************************************* | |||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002498 ENSRNOG00000001825 Pkp2 | ||||||
| rat | .((.(((((((.((((.....(((...((((....((..(((((.(((....))))))))...))))))...)))....)))).)))))...)).)) | 0.610 -22.60 | |||||
| rat | chromosome:11:86492087:86492183:1 | Same_strand|Intronic_non-coding|ENSRNOT00000002498|ENSRNOG00000001825 ## ENSRNOG00000001825|protein_coding|Pkp2|Pkp2 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q562C0] |
sblock4369 [novel_lenNOK_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.279 | no | no | 0.36/0.56 | 18/22/0.17 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 4 1 10 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 13 27 39 13 | 24 11 1 26 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.50 0.32 0.45 | 2 9 5 3 | 23 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------CUGAUGG-------------------------------------------------- | 11 | novel | ||
| seed | --------------GAAACCU-------------------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | -------------------------------------------------------------------GGAUCUU--------------------------------------------- | 1 | novel | ||
| seed | -CCCAUGU--------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------AGUGAAA----------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------CAGAUAG------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------GUGGAAG---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------UGUUUAC------------------------- | 1 | novel | ||
| seed | --------GGAAGUG-------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------GAUGGAU------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------TCTGATGGATCTTTGGGTA--------------------------------------- | 19 | 1 | - | 10 | |
| -------------TGAAACCTGAAAATGCAGA--------------------------------------------------------------------------------------- | 19 | - | - | 4 | |
| TCCCATGTGGAAGTGAAACCT-------------------------------------------------------------------------------------------------- | 21 | - | - | 1 | |
| -----TGTGGAAGTGAAACCTGAA----------------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------------------------TGGATCTTTGGGTATTTGT---------------------------------- | 19 | 1 | - | - | |
| ---------------------------GCAGATAGGAACTGGACC-------------------------------------------------------------------------- | 18 | - | - | 1 | |
| ---------------------------------------------------------------TGATGGATCTTTGGGTATTTGT---------------------------------- | 22 | - | - | 1 | |
| --------------------------------------------------------------------------------------GTGTTTACCTTGTCTTCCTA------------- | 20 | - | 1 | - | |
| -------TGGAAGTGAAACCTGAAAA--------------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ----------AAGTGAAACCTGAAAATGCAGA--------------------------------------------------------------------------------------- | 22 | - | - | 1 | |
| rat | tcccatgtggaagTGAAACCTGAAAATGCAGAtaggaactggaccagagttcaggggagccTCTGATGGATCTTTGGGTAtttgtagtgtttaccttgtcttcctaaaatgctttgggg | ||||
| *********************************************************************************************************************** | |||||
| rat | .((((.(((((((...((..((((..((((((((.........((((((.((((((....)))))).....)))))).))))))))...))))..))..)))))......))..)))). | 0.530 -32.00 | |||
| rat | chromosome:15:234955:235073:-1 | intergenic |
sblock7143 [novel_lenNOK_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.572 | no | no | 0.48/0.71 | 18/24/0.42 | 0.0 1.0 0.3 | 0.0 0.3 0.3 | 1 6 6 | 0 0 0 | 1 2 1 | 0 0 0 | 17 23 6 | 11 4 31 | 5arm 5arm 3arm | 1 2 2 | nd nd nd | 0.38 0.42 0.42 | 5 3 4 | 19 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------GGAACGA----------------------------------------------------------------------------- | 6 | novel | |
| seed | --------------------------------------------------------------------------------------GCAGAGA------------------ | 4 | novel | |
| seed | -------------------------------------------------------------------------------------UGCAGAG------------------- | 3 | novel | |
| seed | ----------------------------------------------------------------------------------------AGAGAAC---------------- | 2 | novel | |
| seed | ------------------------AAUGGAA-------------------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------CCCCGUA-------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------------------AGAACCG-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------TGGAACGAGCACATCCTGC------------------------------------------------------------------ | 19 | 1 | 4 | |
| -------------------------------------------------------------------------------------TGCAGAGAACCGAGCTCCC------- | 19 | - | 4 | |
| ------------------------------------------------------------------------------------CTGCAGAGAACCGAGCTCCCG------ | 21 | - | 2 | |
| -----------------------TAATGGAACGAGCACATCCTG------------------------------------------------------------------- | 21 | - | 2 | |
| ------------------------------------------------------------------------------------CTGCAGAGAACCGAGCTCC-------- | 19 | - | 1 | |
| -----------------------------------------------------------------------------------------GAGAACCGAGCTCCCGGGGTG- | 21 | - | 1 | |
| --------------------------TGGAACGAGCACATCCTG------------------------------------------------------------------- | 18 | - | 1 | |
| ---------------------------------------------------------------------------------------CAGAGAACCGAGCTCCCGGGGTGG | 24 | - | 1 | |
| -----------------TCCCCGTAATGGAACGAGCAC------------------------------------------------------------------------- | 21 | - | 1 | |
| ---------------------------------------------------------------------------------------CAGAGAACCGAGCTCCCGGGG--- | 21 | - | 1 | |
| rat | gggctcacgctccgcactccccgTAATGGAACGAGCACATCCTGCcttggttataaaaaggaaacgtagttgttggatggggaaCTGCAGAGAACCGAGCTCCCGgggtgg | |||
| *************************************************************************************************************** | ||||
| rat | ((((((...(((.(((.(((((((.....(((((..((.((((...(((....)))..))))...))..)))))..)))))))..))).)))....))))))......... | 0.850 -32.60 | ||
| rat | chromosome:20:5542365:5542475:1 | intergenic |
novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH (6 loci)
block523927 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.594 | no | no | 0.58/0.74 | 18/25/0.29 | 1.6 | 2.6 | 21 | 0 | 7 | 0 | 2 | 19 | 5arm | 1 | 66 | 0.33 | 3 | 21 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------GGCGCUC------------------------------------------------------------------------------------------- | 9 | novel | ||||||
| seed | -------CCAUGGC----------------------------------------------------------------------------------------------- | 3 | novel | ||||||
| seed | -------------CGCUCAG----------------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | ----------UGGCGCU-------------------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | ------------GCGCUCA------------------------------------------------------------------------------------------ | 2 | novel | ||||||
| seed | ---CCUGCCA--------------------------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------CUCAGCG--------------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------AUGGCGC--------------------------------------------------------------------------------------------- | 1 | miR-652 | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----------TGGCGCTCAGCGAGCCTA--------------------------------------------------------------------------------- | 18 | 1 | - | 1 | 1 | - | 1 | - | |
| ----------TGGCGCTCAGCGAGCCTATCT------------------------------------------------------------------------------ | 21 | - | - | 2 | - | 1 | - | - | |
| ---------ATGGCGCTCAGCGAGCCT---------------------------------------------------------------------------------- | 18 | - | - | 1 | 1 | - | - | - | |
| -----------GGCGCTCAGCGAGCCTATC------------------------------------------------------------------------------- | 19 | - | 2 | - | - | - | - | - | |
| --------------GCTCAGCGAGCCTATCTTG---------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| --CCCTGCCATGGCGCTCAGCGA-------------------------------------------------------------------------------------- | 21 | - | - | 1 | - | - | - | - | |
| ----------TGGCGCTCAGCGAGCCTATC------------------------------------------------------------------------------- | 20 | - | - | 1 | - | - | - | - | |
| ------GCCATGGCGCTCAGCGAGCCTATCT------------------------------------------------------------------------------ | 25 | - | - | - | - | 1 | - | - | |
| ------------GCGCTCAGCGAGCCTATCT------------------------------------------------------------------------------ | 19 | - | - | - | 1 | - | - | - | |
| ------GCCATGGCGCTCAGCGAGC------------------------------------------------------------------------------------ | 19 | - | - | 1 | - | - | - | - | |
| ------GCCATGGCGCTCAGCGAG------------------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | |
| --------CATGGCGCTCAGCGAGCCT---------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | |
| ----------TGGCGCTCAGCGAGCCTAT-------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | |
| ------------GCGCTCAGCGAGCCTATCTTGC--------------------------------------------------------------------------- | 22 | - | - | - | 1 | - | - | - | |
| rat | gtCCCTGCCATGGCGCTCAGCGAGCCTATCTTGCcgtcctttgccactttcgccagcccctgcgagcgcggcctccaggaggtgagggcagcgagggtccgcgggcggc | ||||||||
| ************************************************************************************************************* | |||||||||
| ..............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++ | ENSRNOT00000019052 ENSRNOG00000014205 Klf2_predicted | ||||||||
| rat | ((((((((...(((.(((.((..(((...((..((.((((..(((...(((((........)))))...)))....))))))..))))).))))).))).))))).))) | 0.710 -45.40 | |||||||
| rat | chromosome:16:17943631:17943739:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000019052|ENSRNOG00000014205 ## ENSRNOG00000014205|protein_coding|Klf2_predicted|Krueppel-like factor 2 (Lung krueppel-like factor). [Source:UniProtKB/Swiss-Prot;Acc:Q9ET58] ## {SimpF: oe = 0.82 -1 CpG} |
block1403404 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.449 | no | no | 0.61/0.67 | 18/21/0.10 | 1.4 0.0 | 1.4 0.0 | 8 2 | 0 0 | 5 1 | 0 0 | 2 12 | 17 11 | 5arm 5arm | 1 1 | nd nd | 0.32 0.37 | 3 3 | 10 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------CAGACGC---------------------------------------------------------------------- | 4 | novel | ||||
| seed | -----UGCAGAC------------------------------------------------------------------------ | 2 | novel | ||||
| seed | -------------CCCAAUC---------------------------------------------------------------- | 2 | novel | ||||
| seed | ----CUGCAGA------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---GCUGCAG-------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ------GCAGACGCCCAATCACTGC----------------------------------------------------------- | 19 | - | 2 | - | 1 | 1 | |
| ------------GCCCAATCACTGCGACTGC----------------------------------------------------- | 19 | - | - | - | 2 | - | |
| ----CTGCAGACGCCCAATCACTGC----------------------------------------------------------- | 21 | - | - | 1 | - | - | |
| --CGCTGCAGACGCCCAATC---------------------------------------------------------------- | 18 | - | - | - | - | 1 | |
| ----CTGCAGACGCCCAATCAC-------------------------------------------------------------- | 18 | - | 1 | - | - | - | |
| ---GCTGCAGACGCCCAATCAC-------------------------------------------------------------- | 19 | 1 | - | - | - | - | |
| rat | gcCGCTGCAGACGCCCAATCACTGCGACTGCtgcctgaggctctagggacgcgcgcagaggagtggagaggtctctcagcgcgc | ||||||
| ************************************************************************************ | |||||||
| rat | (((((((.(((.(((...((.((((..((.((((.((...((....))...)).))))))..)))).))))).)))))))).)) | 0.960 -31.40 | |||||
| rat | chromosome:3:118298158:118298241:-1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31059 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.