miR-Intess™

other hairpins

novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH (6 loci)

block1848473 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.595

no

no

0.50/0.56

18/24/0.06

3.0

3.1

15

0

2

0

0

24

5arm

1

nd

0.33

3

16

2

na

na

		reads	miRBase family seed
seed	-GCUUUAG---------------------------------------------------------------------------------	10	novel
seed	------AGGUCCG----------------------------------------------------------------------------	6	novel
		len	cloning frequencies
			T2S1	T5S1
	TGCTTTAGGTCCGCAGGAA----------------------------------------------------------------------	19	3	4
	-----TAGGTCCGCAGGAATGTGA-----------------------------------------------------------------	19	-	6
	TGCTTTAGGTCCGCAGGA-----------------------------------------------------------------------	18	-	2
	TGCTTTAGGTCCGCAGGAATGTGA-----------------------------------------------------------------	24	-	1
rat	TGCTTTAGGTCCGCAGGAATGTGAtggtccagctaccgtggataacctaccgaaggtgcttcccttggccatggcctcagcgggaaggc
	*****************************************************************************************
rat	.(((((...(((((..((..((.((((((.((.......(((..((((.....))))...))))).)))))).)).)).))))))))))	0.460 -27.31

rat

chromosome:5:79245318:79245406:1

intergenic

block2369439 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.074

no

no

0.50/0.53

18/22/0.06

0.3 1.4

0.0 1.4

3 13

0 0

2 5

0 0

9 1

1 6

3arm 3arm

2 2

nd nd

0.37 0.45

3 6

16

6

na

na

		reads	miRBase family seed
seed	-----------------------------------------------CAGAUGA------------	7	novel
seed	--------------------------------------------UGGCAGA---------------	6	novel
seed	---------------------------------------UAGCAUG--------------------	2	novel
seed	----------------------------------------AGCAUGG-------------------	1	novel
		len	cloning frequencies
			T1S1	T2S2	T3S1	T3S2	T5S1	T5S2
	----------------------------------------------GCAGATGAGGAGGAAGATC-	19	3	1	-	1	1	1
	-------------------------------------------ATGGCAGATGAGGAGGAA-----	18	1	-	-	1	1	-
	-------------------------------------------ATGGCAGATGAGGAGGAAG----	19	1	-	-	-	-	1
	--------------------------------------CTAGCATGGCAGATGAGGA---------	19	2	-	-	-	-	-
	---------------------------------------TAGCATGGCAGATGAGGA---------	18	-	-	1	-	-	-
	-------------------------------------------ATGGCAGATGAGGAGGAAGATC-	22	-	-	-	-	1	-
rat	ggataagaaactgtatatcccagaaggctggtaggcagCTAGCATGGCAGATGAGGAGGAAGATCc
	******************************************************************
	................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000020256 ENSRNOG00000015100
rat	((((......((.(((...(((....((((((.....)))))).)))...))).))......))))	0.960 -15.00

rat

chromosome:8:128676743:128676808:-1

Same_strand|Boundary_non-coding|ENSRNOT00000020256|ENSRNOG00000015100 ## ENSRNOG00000015100|pseudogene||

block91857 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.477

no

no

0.61/0.67

18/22/0.40

2.0

1.3

25

0

8

0

0

22

5arm

1

nd

0.37

3

25

8

na

na

		reads	miRBase family seed
seed	------------CUGAAGC-------------------------------------------------------------------------------------	7	novel
seed	---------GGGCUGA----------------------------------------------------------------------------------------	6	novel
seed	----------GGCUGAA---------------------------------------------------------------------------------------	6	novel
seed	-----------GCUGAAG--------------------------------------------------------------------------------------	3	novel
seed	---GCUGUGG----------------------------------------------------------------------------------------------	1	novel
seed	-UCGCUGU------------------------------------------------------------------------------------------------	1	novel
seed	-------UGGGGCU------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T2S1	T2S2	T3S1	T3S2	T4S2	T5S1	T5S2
	-----------GCTGAAGCACAGGTAGCCG--------------------------------------------------------------------------	19	-	-	-	-	2	-	1	1
	---------GGGCTGAAGCACAGGTAGC----------------------------------------------------------------------------	19	-	-	-	2	1	1	-	-
	-----------GCTGAAGCACAGGTAGCC---------------------------------------------------------------------------	18	-	1	-	1	1	-	-	-
	--------GGGGCTGAAGCACAGGTAGC----------------------------------------------------------------------------	20	2	-	-	-	-	-	1	-
	--------GGGGCTGAAGCACAGGTAGCC---------------------------------------------------------------------------	21	-	2	-	-	-	-	-	-
	----------GGCTGAAGCACAGGTAGCC---------------------------------------------------------------------------	19	-	-	-	2	-	-	-	-
	--CGCTGTGGGGCTGAAGCACAG---------------------------------------------------------------------------------	21	-	-	-	-	-	-	1	-
	CTCGCTGTGGGGCTGAAGCAC-----------------------------------------------------------------------------------	21	-	-	-	-	-	-	1	-
	---------GGGCTGAAGCACAGGTAGCCG--------------------------------------------------------------------------	21	-	-	-	-	-	-	-	1
	------GTGGGGCTGAAGCACAGGTAGC----------------------------------------------------------------------------	22	-	-	1	-	-	-	-	-
	---------GGGCTGAAGCACAGGTAGCC---------------------------------------------------------------------------	20	-	-	-	-	-	-	1	-
	----------GGCTGAAGCACAGGTAGC----------------------------------------------------------------------------	18	-	-	-	1	-	-	-	-
	--------GGGGCTGAAGCACAGGTA------------------------------------------------------------------------------	18	-	-	-	1	-	-	-	-
rat	CTCGCTGTGGGGCTGAAGCACAGGTAGCCGggtgggccatgtccggggctgcagcgggcggccgaggtggaggttcctgggggccggggcgcggaggggcgggg
	********************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000006875 ENSRNOG00000004686 Spop
	...........................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000005939 ENSRNOG00000004417 NP_001102509.1
rat	((((((......(((..((...(((..(((((....((((.((...((((((.....)))))))).)))).....)))))..)))...)).)))...)))))).	0.700 -44.60

rat

chromosome:10:84022274:84022377:1

Same_strand|Intronic_coding|ENSRNOT00000006875|ENSRNOG00000004686 ## Same_strand|Boundary_non-coding|ENSRNOT00000006230|ENSRNOG00000004686 ## ENSRNOG00000004686|protein_coding|Spop|Spop protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5BJL3]

block409030 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.839

no

no

0.50/0.72

18/23/0.36

1.9

2.1

25

0

8

0

4

9

5arm

8

nd

0.32

2

25

8

na

na

		reads	miRBase family seed
seed	---------AGCUUGG--------------------------------------------------------------------------------	11	novel
seed	-----CCGGAGC------------------------------------------------------------------------------------	6	novel
seed	-------GGAGCUU----------------------------------------------------------------------------------	3	novel
seed	------CGGAGCU-----------------------------------------------------------------------------------	2	novel
seed	------------UUGGGGA-----------------------------------------------------------------------------	1	novel
seed	--------------GGGGAAG---------------------------------------------------------------------------	1	novel
seed	-------------UGGGGAA----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S2	T5S2
	--------GAGCTTGGGGAAGGAAGTC---------------------------------------------------------------------	19	1	3	-	-	-	3	-	-
	------CGGAGCTTGGGGAAGGAAGTC---------------------------------------------------------------------	21	-	-	1	-	-	1	1	-
	----GCCGGAGCTTGGGGAAGG--------------------------------------------------------------------------	18	-	-	-	1	1	1	-	-
	--------GAGCTTGGGGAAGGAAGTCTCTC-----------------------------------------------------------------	23	-	-	-	-	-	1	-	1
	-----CCGGAGCTTGGGGAAGGAA------------------------------------------------------------------------	19	-	-	-	-	1	1	-	-
	--------GAGCTTGGGGAAGGAAGTCTC-------------------------------------------------------------------	21	-	-	1	-	-	-	-	-
	-------------TGGGGAAGGAAGTCTCTC-----------------------------------------------------------------	18	-	-	-	-	1	-	-	-
	----GCCGGAGCTTGGGGAAGGAA------------------------------------------------------------------------	20	-	-	1	-	-	-	-	-
	----GCCGGAGCTTGGGGAAGGAAGTC---------------------------------------------------------------------	23	-	-	-	-	-	-	1	-
	--------GAGCTTGGGGAAGGAAGT----------------------------------------------------------------------	18	1	-	-	-	-	-	-	-
	-----------CTTGGGGAAGGAAGTCTCTCTG---------------------------------------------------------------	22	-	-	-	-	-	-	-	1
	----GCCGGAGCTTGGGGAAGGA-------------------------------------------------------------------------	19	-	-	-	-	1	-	-	-
	------------TTGGGGAAGGAAGTCTCT------------------------------------------------------------------	18	-	-	-	-	1	-	-	-
rat	tctcGCCGGAGCTTGGGGAAGGAAGTCTCTCTGtggaggtctgagggaagagctcgcgccaggtagacgctgcgccgtcatcatgggcaaggggga
	************************************************************************************************
	...............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000040676 ENSRNOG00000029107 RGD1561694_predicted
rat	((((.((...(((((..((.((..((((..((((((((.(((......))).))).))).))..))))......)).))..))..)))..))))))	0.630 -30.40

rat

chromosome:14:74252396:74252491:1

Same_strand|Boundary_non-coding|ENSRNOT00000040676|ENSRNOG00000029107 ## ENSRNOG00000029107|protein_coding|RGD1561694_predicted|

novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (6 loci)

block515309 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.112

no

no

0.44/0.50

18/22/0.27

2.2

1.1

15

0

8

0

1

8

3arm

1

nd

0.56

4

15

8

na

na

		reads	miRBase family seed
seed	-----------------------------------------GCUUUGG-----------	7	novel
seed	-----------------------------------GUGAUGG-----------------	3	novel
seed	--------------------------------------AUGGCUU--------------	2	miR-135a/135b
seed	---------------------------------------UGGCUUU-------------	2	novel
seed	------------------------------------UGAUGGC----------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S2	T4S2	T5S1	T5S2
	----------------------------------------GGCTTTGGTGACTCTATC-	18	1	1	-	1	1	-	-	3
	----------------------------------GGTGATGGCTTTGGTGACTCTA---	22	-	-	2	-	1	-	-	-
	-------------------------------------GATGGCTTTGGTGACTCTA---	19	-	-	-	1	-	-	-	1
	--------------------------------------ATGGCTTTGGTGACTCTA---	18	-	-	1	-	-	-	1	-
	-----------------------------------GTGATGGCTTTGGTGACTCTA---	21	-	-	-	-	-	1	-	-
rat	tgaagttgctccacctaggtctacaaggaccaggGGTGATGGCTTTGGTGACTCTATCa
	***********************************************************
	---------------------------------------------------------------------	ENSRNOT00000006624 ENSRNOG00000004752 Vgcnl1
rat	...(((..((((((((.(((((....))))).)))....)))....))..)))......	0.760 -16.60

rat

chromosome:15:108460955:108461013:1

Opposite_strand|Boundary_non-coding|ENSRNOT00000057404|ENSRNOG00000004752 ## Opposite_strand|Intronic_coding|ENSRNOT00000006624|ENSRNOG00000004752 ## ENSRNOG00000004752|protein_coding|Vgcnl1|Sodium leak channel non-selective protein (Four domain-type voltage- gated ion channel alpha-1 subunit) (Voltage gated channel-like protein 1). [Source:UniProtKB/Swiss-Prot;Acc:Q6Q760]

block997534 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.023

no

no

0.39/0.53

18/25/0.38

1.3

2.6

13

0

3

0

2

3

3arm

1

nd

0.42

6

13

3

na

na

		reads	miRBase family seed
seed	--------------------------------------------GAAUACC------------------	7	novel
seed	------------------------------------------------ACCAAAG--------------	3	novel
seed	------------------------------------------CUGAAUA--------------------	2	novel
seed	-------------------------------------------UGAAUAC-------------------	1	novel
		len	cloning frequencies
			T1S2	T2S1	T5S1
	-----------------------------------------------TACCAAAGGACTGAGGACC---	19	-	-	2
	-------------------------------------------TGAATACCAAAGGACTGAGGACC---	23	-	-	2
	-------------------------------------------TGAATACCAAAGGACTGAG-------	19	-	-	2
	-------------------------------------------TGAATACCAAAGGACTGA--------	18	-	-	1
	------------------------------------------CTGAATACCAAAGGACTGA--------	19	-	-	1
	-----------------------------------------TCTGAATACCAAAGGACTGAGGACC---	25	-	1	-
	-------------------------------------------TGAATACCAAAGGACTGAGGACCC--	24	-	-	1
	-----------------------------------------TCTGAATACCAAAGGACTGAGGAC----	24	-	-	1
	-----------------------------------------------TACCAAAGGACTGAGGAC----	18	1	-	-
	-------------------------------------------TGAATACCAAAGGACTGAGG------	20	-	1	-
rat	tggagacaaagtttgctgaggtggaaaggggcctacaagccTCTGAATACCAAAGGACTGAGGACCCaa
	*********************************************************************
rat	(((......((((..((..((((...((((((......))))))...))))..))))))......))).	0.750 -20.10

rat

chromosome:1:128260396:128260464:1

intergenic

block1790210 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.801

no

no

0.68/0.79

18/22/0.45

1.5

2.5

11

0

5

0

0

17

5arm

1

nd

0.32

4

11

5

na

na

		reads	miRBase family seed
seed	-CCGCGGG--------------------------------------------------------------------------------------------	7	novel
seed	----CGGGACU-----------------------------------------------------------------------------------------	2	novel
seed	-----GGGACUC----------------------------------------------------------------------------------------	1	novel
seed	--------ACUCGGG-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S2	T3S2	T5S1
	ACCGCGGGACTCGGGGCTC---------------------------------------------------------------------------------	19	3	1	-	-	-
	ACCGCGGGACTCGGGGCTCTG-------------------------------------------------------------------------------	21	2	-	1	-	-
	----CGGGACTCGGGGCTCTGTCAG---------------------------------------------------------------------------	21	-	-	-	1	-
	---GCGGGACTCGGGGCTCTGTCAG---------------------------------------------------------------------------	22	-	-	-	1	-
	-------GACTCGGGGCTCTGTCAGG--------------------------------------------------------------------------	19	-	-	-	-	1
	---GCGGGACTCGGGGCTCTG-------------------------------------------------------------------------------	18	1	-	-	-	-
rat	ACCGCGGGACTCGGGGCTCTGTCAGGgctggaagtggagctggagctgaccgaaggagctgccgctgggccggggtggaacacagctctgcaccggggtc
	****************************************************************************************************
	.......>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000011049 ENSRNOG00000007982 Slc9a1
rat	(((.(((....((((((((..((..((((...(((((((((((......)).....)))).))))).))))..))..)).....))))))..))).))).	0.510 -39.40

rat

chromosome:5:151748363:151748462:-1

Same_strand|Boundary_non-coding|ENSRNOT00000011049|ENSRNOG00000007982 ## ENSRNOG00000007982|protein_coding|Slc9a1|Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1) (NHE-1) (Solute carrier family 9 member 1). [Source:UniProtKB/Swiss-Prot;Acc:P26431]

block2127660 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.113

no

no

0.26/0.28

18/19/0.00

1.2

1.5

10

0

6

0

2

7

5arm

2

nd

0.44

4

10

6

na

na

		reads	miRBase family seed
seed	----CAAUUUA-----------------------------------------------------------	4	novel
seed	-----AAUUUAU----------------------------------------------------------	4	novel
seed	---UCAAUUU------------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S1	T3S1	T3S2	T4S1	T4S2	T5S2
	---TCAATTTATTCCCACAAA-------------------------------------------------	18	1	1	-	-	1	-
	--ATCAATTTATTCCCACAA--------------------------------------------------	18	-	1	1	-	-	-
	----CAATTTATTCCCACAAAAA-----------------------------------------------	19	1	-	-	-	-	1
	----CAATTTATTCCCACAAAA------------------------------------------------	18	1	-	-	1	-	-
	---TCAATTTATTCCCACAAAA------------------------------------------------	19	-	-	-	1	-	-
rat	ccATCAATTTATTCCCACAAAAAgcatcttaaaagagagaaaggaggtgggcagtcatatattagggtgg
	**********************************************************************
rat	(((((....(((.(((((........((((....))))........))))).......)))....)))))	0.960 -14.29

rat

chromosome:7:73956564:73956633:-1

intergenic

block1061145 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.568

no

no

0.52/0.60

19/26/0.64

4.7

2.1

7

0

2

0

4

22

3arm

1

nd

0.38

5

11

2

na

na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------GUUCCAG---------------------------	4	novel
seed	---------------------------------------------------------------------------------------------GAGCUGG----------------	4	novel
seed	---------------------------------------------------------------------------------------AGAGAUG----------------------	1	novel
seed	------------------------------------------------------------------------------------UCCAGAG-------------------------	1	novel
seed	------------------------------------------------------------------------------------------GAUGAGC-------------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	--------------------------------------------------------------------------------------------TGAGCTGGCAGTCCCAGAGA----	20	-	4
	---------------------------------------------------------------------------------TGTTCCAGAGATGAGCTGGCAGTCCC---------	26	-	3
	-----------------------------------------------------------------------------------------AGATGAGCTGGCAGTCCCAGAGA----	23	-	1
	--------------------------------------------------------------------------------------CAGAGATGAGCTGGCAGTCCCAGA------	24	1	-
	-----------------------------------------------------------------------------------TTCCAGAGATGAGCTGGCAGT------------	21	-	1
	---------------------------------------------------------------------------------TGTTCCAGAGATGAGCTGG----------------	19	-	1
rat	cctgaatctgagtggctggctgtcttggacactcttgaggcagtcggatgcgtggaaggcagagcgtgtcgagcccagcccTGTTCCAGAGATGAGCTGGCAGTCCCAGAGAtgga
	********************************************************************************************************************
rat	((....((((....((..(((((((((((((...(((.(((..((((((((.((.....))..)))).))))))))))...))).))).)))).)))..)).....))))...)).	0.740 -37.70

rat

chromosome:20:5529393:5529508:-1

intergenic

block1093682 [novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.069

no

no

0.42/0.52

18/25/0.61

4.4 0.0 0.0

3.4 0.5 0.0

28 2 1

0 0 0

6 2 1

0 0 0

1 17 21

17 9 -1

5arm 5arm 5arm_loop

1 1 1

nd nd nd

0.45 0.47 0.40

5 4 4

46

6

na

na

		reads	miRBase family seed
seed	--CCCUACC------------------------------------------------------------------------------------	15	novel
seed	------ACCUGAA--------------------------------------------------------------------------------	15	novel
seed	----------GAAACCU----------------------------------------------------------------------------	11	novel
seed	---------UGAAACC-----------------------------------------------------------------------------	2	novel
seed	------------------CCAUCCA--------------------------------------------------------------------	2	novel
seed	----------------------CCAUCAU----------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S2	T4S1	T4S2	T5S1
	-TCCCTACCTGAAACCTTCCA------------------------------------------------------------------------	20	1	4	-	-	1	7
	-----TACCTGAAACCTTCCATCCA--------------------------------------------------------------------	20	2	1	1	-	3	3
	---------TGAAACCTTCCATCCATCA-----------------------------------------------------------------	19	-	-	-	-	2	8
	-----TACCTGAAACCTTCCATCCATCA-----------------------------------------------------------------	23	-	-	-	-	-	3
	--------CTGAAACCTTCCATCCATCATGCTT------------------------------------------------------------	25	-	2	-	-	-	-
	-TCCCTACCTGAAACCTTC--------------------------------------------------------------------------	18	2	-	-	-	-	-
	---------TGAAACCTTCCATCCATCATGC--------------------------------------------------------------	22	-	-	-	-	-	1
	-----------------TCCATCCATCATGCTTTGG---------------------------------------------------------	19	1	-	-	-	-	-
	-----TACCTGAAACCTTCCATCC---------------------------------------------------------------------	19	-	-	-	-	-	1
	-----------------TCCATCCATCATGCTTTG----------------------------------------------------------	18	-	-	-	-	-	1
	-----TACCTGAAACCTTCCATCCATC------------------------------------------------------------------	22	-	-	-	1	-	-
	---------------------TCCATCATGCTTTGGCCTGGGTGAA-----------------------------------------------	25	-	-	-	-	-	1
rat	cTCCCTACCTGAAACCTTCCATCCATCAtgctttggcctgggtgaaggtcatccccaagcctcagctctttggggcactggcttcctgttgag
	*********************************************************************************************
rat	(((...((..(((.((.....((((....(((..(((.((((.((......)))))).)))..)))....)))).....)).)))..)).)))	0.530 -27.40

rat

chromosome:20:5544874:5544966:1

intergenic

Back to summary page

other hairpins:

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