other hairpins
novel_lenNOK_cloningOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (6 loci)
novel_lenNOK_cloningOK_shortStem_randfoldOK_bulgeHIGH (6 loci)
block590158 [novel_lenNOK_cloningOK_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.55 | 18/20/0.09 | 0.0 | 0.5 | 11 | 0 | 7 | 0 | 3 | 31 | 3arm | 1 | nd | 0.30 | 4 | 11 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------------------------------------GGCAGUG--------------- | 11 | miR-34a/34c/449a | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------TGGCAGTGTCTTATCTGG----- | 18 | 1 | 2 | 1 | - | 2 | - | 1 | |
| ----------------------------------------------------------------------------------------TGGCAGTGTCTTATCTGGC---- | 19 | 2 | - | - | 1 | - | - | - | |
| ----------------------------------------------------------------------------------------TGGCAGTGTCTTATCTGGCC--- | 20 | - | - | - | - | - | 1 | - | |
| rat | tctgggctaccaggcttctgtgccagtgtgtccaacaccagcacttggctttgatcccagattgcctgagctggtttggaatgaatgcTGGCAGTGTCTTATCTGGCCcag | ||||||||
| *************************************************************************************************************** | |||||||||
| rat | .((((((((..((((.....(((((((((.(((((.((((((....(((((((....))))..)))...)))))))))))....)))))))))..))))....)))))))) | 0.970 -49.70 | |||||||
| rat | chromosome:16:83191552:83191662:1 | intergenic |
block918623 [novel_lenNOK_cloningOK_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.37/0.48 | 18/23/0.58 | 0.0 | 1.9 | 17 | 0 | 3 | 0 | 1 | 8 | 5arm | 1 | nd | 0.22 | 4 | 24 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --CUCCAUU----------------------------------------------------------------------- | 18 | miR-136 | ||
| seed | ---UCCAUUU---------------------------------------------------------------------- | 5 | novel | ||
| seed | -GCUCCAU------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T4S2 | |||
| -GCTCCATTTGTTTTGAGGA------------------------------------------------------------ | 19 | 5 | 2 | - | |
| -GCTCCATTTGTTTTGAGGATGGC-------------------------------------------------------- | 23 | 3 | 3 | - | |
| -GCTCCATTTGTTTTGAGGATG---------------------------------------------------------- | 21 | 2 | 2 | - | |
| --CTCCATTTGTTTTGAGGAT----------------------------------------------------------- | 19 | - | 1 | 1 | |
| AGCTCCATTTGTTTTGAGGAT----------------------------------------------------------- | 21 | 1 | - | - | |
| -GCTCCATTTGTTTTGAGGAT----------------------------------------------------------- | 20 | 1 | - | - | |
| --CTCCATTTGTTTTGAGGATGGC-------------------------------------------------------- | 22 | 1 | - | - | |
| --CTCCATTTGTTTTGAGGATG---------------------------------------------------------- | 20 | - | 1 | - | |
| --CTCCATTTGTTTTGAGGA------------------------------------------------------------ | 18 | - | 1 | - | |
| rat | aGCTCCATTTGTTTTGAGGATGGCttgtattcagaaacggcaacagagaaatgcaagttagcctcttggatgggaaggca | ||||
| ******************************************************************************** | |||||
| rat | .((((((((((....((((.((((((((((((...............))).))))))))).)))).)))))))...))). | 1.000 -23.56 | |||
| rat | chromosome:1:217610203:217610282:-1 | intergenic |
block1929759 [novel_lenNOK_cloningOK_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.32/0.35 | 18/20/0.04 | 0.0 | 0.2 | 21 | 0 | 3 | 0 | 1 | 41 | 3arm | 1 | nd | 0.21 | 4 | 24 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------------------------------------CCUCACA------------ | 24 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T2S2 | |||
| ----------------------------------------------------------------------------------------------------ACCTCACACTGTTTTTAA-- | 18 | 1 | 5 | 12 | |
| ----------------------------------------------------------------------------------------------------ACCTCACACTGTTTTTAAA- | 19 | - | 1 | 4 | |
| ----------------------------------------------------------------------------------------------------ACCTCACACTGTTTTTAAAG | 20 | - | - | 1 | |
| rat | cctttgggatctgtgatggacttttatcctggacactgcagggtcctactcataaaaccagttcctactgcagcatgtccaagatgtaaccaaagtatctACCTCACACTGTTTTTAAAg | ||||
| ************************************************************************************************************************ | |||||
| rat | .((((((((..(((((.(((((((((((.((((((((((((((..((............))..))..))))))..)))))).)))).....))))).....)))))))....)))))))) | 0.800 -31.70 | |||
| rat | chromosome:6:44536289:44536408:-1 | intergenic |
block1978183 [novel_lenNOK_cloningOK_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.44/0.47 | 18/19/0.00 | 0.0 | 0.0 | 13 | 0 | 6 | 0 | 4 | 3 | 5arm | 1 | nd | 0.28 | 4 | 16 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----GGAGAGA---------------------------------------------------- | 16 | miR-185 | |||||
| len | cloning frequencies | |||||||
| T1S1 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----TGGAGAGAAAGGCAGATT------------------------------------------ | 18 | 3 | 3 | 1 | 5 | 2 | 1 | |
| ----TGGAGAGAAAGGCAGATTC----------------------------------------- | 19 | - | - | - | 1 | - | - | |
| rat | tcctTGGAGAGAAAGGCAGATTccctactacggacagaaaaacatcttttctctcaaaggggag | |||||||
| **************************************************************** | ||||||||
| rat | (((((.((((((((((....(((((......))...)))......))))))))))...))))). | 0.920 -18.50 | ||||||
| rat | chromosome:6:129266124:129266187:-1 | intergenic |
block2130849 [novel_lenNOK_cloningOK_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.26/0.28 | 18/19/0.00 | 0.0 | 0.2 | 10 | 0 | 4 | 0 | 4 | 14 | 3arm | 1 | nd | 0.22 | 4 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------UAAGGUU--------------- | 12 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------CTAAGGTTTTATACTTTGA---- | 19 | 4 | 2 | 1 | 2 | |
| ----------------------------------------------------------------CTAAGGTTTTATACTTTG----- | 18 | 1 | - | - | 2 | |
| rat | actgaacttaaagtatgaaatgcatgatttgaataagcattttaagaatacttagctgaaaaatCTAAGGTTTTATACTTTGAccag | |||||
| *************************************************************************************** | ||||||
| rat | .(((...((((((((((((((....(((((.....(((....((((....)))))))...)))))....)))))))))))))).))) | 0.990 -19.30 | ||||
| rat | chromosome:7:79606178:79606264:-1 | intergenic |
block2201931 [novel_lenNOK_cloningOK_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.37/0.40 | 18/20/0.07 | 0.0 | 0.0 | 10 | 0 | 2 | 0 | 1 | 16 | 5arm | 1 | nd | 0.28 | 4 | 15 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --GGAAUGA---------------------------------------------------------------- | 15 | novel | |
| len | cloning frequencies | |||
| T4S1 | T4S2 | |||
| -TGGAATGATGGGAAACAA------------------------------------------------------ | 18 | 2 | 10 | |
| -TGGAATGATGGGAAACAAA----------------------------------------------------- | 19 | 2 | - | |
| -TGGAATGATGGGAAACAAAG---------------------------------------------------- | 20 | 1 | - | |
| rat | cTGGAATGATGGGAAACAAaggaccttggaaatactaatggtgggggccaggaacctgttctcatcttctgga | |||
| ************************************************************************* | ||||
| rat | ((((((.((((((((....(((..(((((...(((.....)))....)))))..))).)))))))))))))). | 1.000 -27.10 | ||
| rat | chromosome:7:34516423:34516495:1 | intergenic |
novel_lenNOK_gcHIGH_multiarm_DicerNOK_loopOverlap (6 loci)
sblock9616 [novel_lenNOK_gcHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.986 | no | no | 0.70/0.95 | 19/20/0.67 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 7 48 3 | 34 -7 27 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | 81 40 7 | 0.35 0.45 0.11 | 3 7 1 | 3 | 3 | -2 | 3 |
| reads | miRBase family seed | ||||
| seed | --------UCGGAGC------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------------------CGCGGCC-------------- | 1 | novel | ||
| seed | -------------------------------------------------CCGCCGG------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S2 | |||
| -----------------------------------------------------------------------------------------------GCGCGGCCGGGTCGGGCGG--- | 19 | - | 1 | - | |
| ------------------------------------------------TCCGCCGGGTCGGGATGGAG------------------------------------------------- | 20 | - | - | 1 | |
| -------TTCGGAGCCCAGGAGTCCCC------------------------------------------------------------------------------------------ | 20 | 1 | - | - | |
| rat | tcccgagTTCGGAGCCCAGGAGTCCCCgtggccgtcgctcaggtgcccTCCGCCGGGTCGGGATGGAGctgcctgccgtgaacttgaaggtggccGCGCGGCCGGGTCGGGCGGggg | ||||
| ********************************************************************************************************************* | |||||
| ..........................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++ | ENSRNOT00000011747 ENSRNOG00000008619 Agtrap | ||||
| rat | .(((..(((((..((((.((...((.((((((((((..((((((....((((.((((.(((.......))))))).)).)))))))).)))))))))).))))))))))))).))). | 0.460 -52.00 | |||
| rat | chromosome:5:165164475:165164591:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000011747|ENSRNOG00000008619 ## Same_strand|Boundary_non-coding|ENSRNOT00000011747|ENSRNOG00000008619 ## Same_strand|Intronic_coding|ENSRNOT00000011747|ENSRNOG00000008619 ## ENSRNOG00000008619|protein_coding|Agtrap|Type-1 angiotensin II receptor-associated protein (AT1 receptor- associated protein). [Source:UniProtKB/Swiss-Prot;Acc:Q642A2] |
sblock1027 [novel_lenNOK_gcHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.393 | no | no | 0.75/0.94 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 24 12 | -4 -2 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.56 0.25 | 5 3 | 2 | 2 | 2 | 4 |
| reads | miRBase family seed | |||
| seed | -------------------------GGGCGGA------------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------GCGCUCC------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S1 | |||
| ------------------------CGGGCGGAGGGGCGGGGG-------------------------------------- | 18 | 1 | - | |
| ------------------------------------------------GGCGCTCCGGAGTGAGGGAG------------ | 20 | - | 1 | |
| rat | gcgggtgggggggcgccctcggaaCGGGCGGAGGGGCGGGGGgagagaGGCGCTCCGGAGTGAGGGAGccggacgctccg | |||
| ******************************************************************************** | ||||
| rat | .((((((....(((.(((((.......((...((((((............))))))...))))))).)))...))).))) | 0.490 -30.61 | ||
| rat | chromosome:1:215882756:215882835:-1 | intergenic ## {Repeats: dust 215882794 215882812 0 class=dust} ## {SimpF: 1 Eponine,oe = 0.88 -1 CpG} |
sblock12453 [novel_lenNOK_gcHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.302 | no | no | 0.79/0.94 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 19 10 | -7 0 | 5arm_loop 3arm | 1 2 | nd nd | 0.53 0.22 | 8 2 | 2 | 2 | 0 | 6 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------CCCCCGC-------------------- | 1 | novel | |
| seed | --------------------GGGCUGG---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| ---------------------------------------GCCCCCGCCCCCGGCCGT---------- | 18 | - | 1 | |
| -------------------GGGGCTGGGAGCAACCGCC----------------------------- | 19 | 1 | - | |
| rat | cgtcacctcctgaccctccGGGGCTGGGAGCAACCGCCgGCCCCCGCCCCCGGCCGTcgctggacgc | |||
| ******************************************************************* | ||||
| rat | ((((......((((...((((((.((((.((........)).)))).))))))..))))...)))). | 0.870 -29.00 | ||
| rat | chromosome:9:58642411:58642477:1 | intergenic ## {Repeats: GC_rich 6 23 1 class=Low_complexity,GC_rich 1 5 1 class=Low_complexity,GC_rich 1 23 1 class=Low_complexity} |
sblock4059 [novel_lenNOK_gcHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.545 | no | no | 0.67/1.00 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 2 | 0 0 0 | 37 32 24 | -1 -2 7 | 5arm_loop 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.22 0.26 0.44 | 2 2 6 | 4 | 3 | -1 | 0 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------CCGACCC---------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------ACCGUGU------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------GGGGCGG---------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S2 | |||
| -------------------------------------------------------------------TCCGACCCCCACTCAGTG------------------------ | 18 | 1 | - | 1 | |
| -------------------------------------CGGGGCGGCCGCGCCGGG------------------------------------------------------ | 18 | - | 1 | - | |
| ----------------------------------------------------------AACCGTGTGTCCGACCCCC-------------------------------- | 19 | - | - | 1 | |
| rat | cgggactcagtggtgggcagggtctgctgtcgtggggCGGGGCGGCCGCGCCGGGactAACCGTGTGTCCGACCCCCACTCAGTGtcgcgcgcgtgcccgcccgccccc | ||||
| ************************************************************************************************************* | |||||
| rat | .(((.......(((((((.((((.(((...(((((.(((((((((.((((.(((......))))))).))).))))......)).))))).))).)))))))))))))) | 0.990 -55.41 | |||
| rat | chromosome:14:45907649:45907757:-1 | intergenic ## {Repeats: GC_rich 1 19 -1 class=Low_complexity,GC_rich 1 22 -1 class=Low_complexity} |
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