other hairpins
novel_lenNOK_gcHIGH_multiarm_DicerNOK_loopOverlap (6 loci)
sblock6139 [novel_lenNOK_gcHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.234 | no | no | 0.74/1.00 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 37 43 | -4 -1 | 5arm_loop 3arm | 1 1 | nd nd | 0.35 0.16 | 5 1 | 2 | 2 | 1 | 0 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------GCUCGCG------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------GGGCGCG--------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------CGGGCGCGGCGCGGGCCCCC--------------------------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------------------------AGCTCGCGGCGCTCTCGCA------------------------------------------- | 19 | 1 | - | |
| rat | ctcacctgcagccgagtggcccgggagcgcgcggctcCGGGCGCGGCGCGGGCCCCCaAGCTCGCGGCGCTCTCGCAgctcttcctcctcgtcctcccgccgccggccctcagccatggg | |||
| ************************************************************************************************************************ | ||||
| rat | ((((.(((..((((.(((((..(((((.(((.((((.((((.(((.(((((((......))))))).))).)))).)))).........))).))))))))))))))...)))...)))) | 0.960 -60.50 | ||
| rat | chromosome:2:177923270:177923389:-1 | intergenic ## {Repeats: GC_rich 1 21 -1 class=Low_complexity,GC_rich 1 40 -1 class=Low_complexity} |
sblock9816 [novel_lenNOK_gcHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.472 | no | no | 0.70/0.95 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 31 | 16 -1 | 5arm 3arm | 1 2 | nd nd | 0.20 0.26 | 1 4 | 2 | 2 | 0 | -18 |
| reads | miRBase family seed | |||
| seed | ---------GGCUACU---------------------------------------------------------------------------------- | 1 | miR-138* | |
| seed | -------------------------------------------------CGGGCGC------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| ------------------------------------------------GCGGGCGCAGCGCGGGGCC------------------------------- | 19 | 1 | - | |
| --------GGGCTACTGGGAACCCCGAC---------------------------------------------------------------------- | 20 | - | 1 | |
| rat | cgccccgcGGGCTACTGGGAACCCCGACgttcgtgttgctcccggctaGCGGGCGCAGCGCGGGGCCggtccgggttgttcgggctgggccgcaggtg | |||
| ************************************************************************************************** | ||||
| rat | ((((..((((.((.((((((((((.(((.((((((((((.((((.....)))).))))))))))....))).))))).)))))...)).)))).)))) | 0.940 -51.10 | ||
| rat | chromosome:5:146692284:146692381:1 | intergenic ## {SimpF: 1 Eponine} |
novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_bulgeHIGH (6 loci)
sblock1963 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.44/0.56 | 18/25/0.20 | 0.0 0.0 0.5 | 0.0 0.5 3.5 | 1 2 2 | 0 0 0 | 1 2 1 | 0 0 0 | 8 21 4 | -4 -16 -5 | 5arm_loop 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.30 0.58 0.26 | 5 11 4 | 5 | 3 | -1 | 5 |
| reads | miRBase family seed | ||||
| seed | ----------------------GGCUCAU------------------------------- | 2 | novel | ||
| seed | ---------CACUGUU-------------------------------------------- | 1 | novel | ||
| seed | -------------------------------ACUUCCA---------------------- | 1 | novel | ||
| seed | --------------------------------CUUCCAG--------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| -------------------------------ACTTCCAGGCAGACAGCTGAGTTCC---- | 25 | - | - | 1 | |
| ---------------------TGGCTCATATACTTCCAGG-------------------- | 19 | - | - | 1 | |
| ------------------------------TACTTCCAGGCAGACAGCT----------- | 19 | - | - | 1 | |
| --------TCACTGTTTGCCATGGCTCA-------------------------------- | 20 | 1 | - | - | |
| ---------------------TGGCTCATATACTTCCAG--------------------- | 18 | - | 1 | - | |
| rat | gctctttcTCACTGTTTGCCATGGCTCATATACTTCCAGGCAGACAGCTGAGTTCCtgcc | ||||
| ************************************************************ | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||||
| rat | ((.....(((((((((((((.(((...........)))))))))))).)))).....)). | 1.000 -22.80 | |||
| rat | chromosome:1:129031139:129031198:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
sblock4274 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.50/0.50 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 10 | -3 -7 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.23 0.50 | 4 6 | 2 | 2 | 0 | -4 |
| reads | miRBase family seed | |||
| seed | -------------------------AGAAAUG-------------------- | 1 | novel | |
| seed | -CGAAAAG-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| TCGAAAAGAGAACAGCCCTGAG------------------------------ | 22 | - | 1 | |
| ------------------------GAGAAATGGGGCTTTGGT---------- | 18 | 1 | - | |
| rat | TCGAAAAGAGAACAGCCCTGAGaaGAGAAATGGGGCTTTGGTtttgtttttg | |||
| **************************************************** | ||||
| -------------------------------------------------------------- | ENSRNOT00000004121 ENSRNOG00000003069 Cd38 | |||
| rat | .((((((.(((((((((((............))))))...))))).)))))) | 1.000 -15.40 | ||
| rat | chromosome:14:72345398:72345449:1 | Opposite_strand|Intronic_coding|ENSRNOT00000004121|ENSRNOG00000003069 ## ENSRNOG00000003069|protein_coding|Cd38|ADP-ribosyl cyclase 1 (EC 3.2.2.5) (Cyclic ADP-ribose hydrolase 1) (cADPr hydrolase 1) (CD38 antigen) (CD38H). [Source:UniProtKB/Swiss-Prot;Acc:Q64244] ## {Repeats: trf 22 27 0 class=trf,dust 72345460 72345460 0 class=dust} |
sblock5548 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.42/0.59 | 18/22/0.20 | 0.5 0.0 | 1.0 0.0 | 4 1 | 0 0 | 1 1 | 0 0 | 43 2 | -4 28 | 5arm_loop 3arm | 1 1 | nd nd | 0.50 0.27 | 3 4 | 5 | 1 | 0 | -18 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------GGGCCUU------------------------------------------------------------------ | 2 | novel |
| seed | ---------------------------------------------GGCCUUA----------------------------------------------------------------- | 2 | novel |
| seed | ----------------------------------------------------------------------------------------------GAGCAGA---------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------GGGCCTTATTGAAACTGTT------------------------------------------------------ | 19 | 2 | |
| -------------------------------------------TGGGCCTTATTGAAACTG-------------------------------------------------------- | 18 | 2 | |
| ---------------------------------------------------------------------------------------------TGAGCAGAGCTGCACTCTGGAG-- | 22 | 1 | |
| rat | acaggaagaggcagattctggttggttcttggtcctgctgagaTGGGCCTTATTGAAACTGTTatgtagagatggggagtgggacaggaactcTGAGCAGAGCTGCACTCTGGAGgt | ||
| ********************************************************************************************************************* | |||
| rat | ((....((((((((.(((((.(((((((((.((((..((........(((((((...((......))...)))))))))..)))))))))))..)).))))))))).))))....)) | 1.000 -42.60 |
| rat | chromosome:18:63572879:63572995:-1 | intergenic |
sblock8040 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.47/0.58 | 18/19/0.00 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 2 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 11 28 31 14 | 3 -13 -17 -1 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.37 0.28 0.32 0.26 | 4 4 4 5 | 5 | 1 | -1 | -2 |
| reads | miRBase family seed | ||
| seed | ------------GCCCCAA-------------------------------------------------- | 2 | novel |
| seed | --------------------------------CUCAUGA------------------------------ | 1 | novel |
| seed | -------------------------------------GAGACCA------------------------- | 1 | novel |
| seed | -----------------------------GCUCUCA--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------TGCCCCAAACATTGGTTTG--------------------------------------- | 19 | 2 | |
| -------------------------------TCTCATGAGACCAGTGTTG------------------- | 19 | 1 | |
| ------------------------------------TGAGACCAGTGTTGCCCTG-------------- | 19 | 1 | |
| ----------------------------TGCTCTCATGAGACCAGT----------------------- | 18 | 1 | |
| rat | gagaggcatcaTGCCCCAAACATTGGTTTGCTCTCATGAGACCAGTGTTGCCCTGctccgtgagcctct | ||
| ********************************************************************* | |||
| rat | .((((((.((((((....(((((((((...(((....)))))))))))).....))...)))))))))) | 0.910 -26.60 |
| rat | chromosome:3:76962641:76962709:1 | intergenic |
sblock974 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.24/0.55 | 19/21/0.50 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 2 6 52 13 | 35 30 -17 13 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.20 0.24 0.26 | 4 4 5 3 | 4 | 4 | -3 | -3 |
| reads | miRBase family seed | |||||
| seed | ---UUUUCCC------------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ---------------------------------------------------------------------------UGGUCUU------------------------ | 1 | novel | |||
| seed | -----------------------------------------------------UUUUACU---------------------------------------------- | 1 | novel | |||
| seed | -------CCCCCUC-------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T5S1 | |||
| ------TCCCCCTCCCTTAACAAGAC-------------------------------------------------------------------------------- | 20 | - | - | 1 | - | |
| --CTTTTCCCCCTCCCTTAAC------------------------------------------------------------------------------------- | 19 | 1 | - | - | - | |
| ----------------------------------------------------TTTTTACTTGAAATATTTGGG--------------------------------- | 21 | - | 1 | - | - | |
| --------------------------------------------------------------------------ATGGTCTTAACAGGGAGGA------------- | 19 | - | - | - | 1 | |
| rat | ttCTTTTCCCCCTCCCTTAACAAGACttgtaaaattcctaatcttttgaataTTTTTACTTGAAATATTTGGGaATGGTCTTAACAGGGAGGAgtgggtgggggaa | |||||
| ********************************************************************************************************** | ||||||
| rat | (((((..((((((((((....((((((......((((((........(((((((((.....)))))))))))))))))))))...)))))))...)))..))))). | 0.850 -33.80 | ||||
| rat | chromosome:1:208428006:208428111:-1 | intergenic |
sblock12467 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.25/0.53 | 18/20/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 20 46 20 | 13 -12 13 | 5arm 5arm_loop_3arm 3arm | 1 10 10 | nd nd nd | 0.37 0.28 0.35 | 5 4 4 | 3 | 2 | -1 | 4 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------UUGUGUG-------------------------------- | 1 | novel | |
| seed | -----------------------------------------------AUGUGUG------------------------------------------------------- | 1 | miR-466b | |
| seed | ---------------------UGUGUCU--------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S2 | |||
| --------------------CTGTGTCTCACGCACACAT---------------------------------------------------------------------- | 19 | 1 | - | |
| ---------------------------------------------------------------------TTTGTGTGTGTAATTGTAAT-------------------- | 20 | - | 1 | |
| ----------------------------------------------TATGTGTGTGTACAGTGT--------------------------------------------- | 18 | - | 1 | |
| rat | gtgtgtatgtgcatgcttgaCTGTGTCTCACGCACACATgcatacaTATGTGTGTGTACAGTGTgggtgTTTGTGTGTGTAATTGTAATtagtagaagcactaaagcac | |||
| ************************************************************************************************************* | ||||
| rat | ((((....((((.((((..((.((.....(((((((((.(((..((((((((....)))).))))..))).))))))))).)).))....))))...))))....)))) | 0.560 -34.30 | ||
| rat | chromosome:9:66109779:66109887:1 | intergenic ## {Repeats: dust 66109827 66109838 0 class=dust,dust 66109843 66109858 0 class=dust} |
novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap (6 loci)
sblock3666 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.126 | no | no | 0.52/0.65 | 18/26/0.33 | 0.0 3.6 | 0.0 1.4 | 1 5 | 0 0 | 1 2 | 0 0 | 12 0 | 1 -25 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.30 0.12 | 3 2 | 6 | 2 | 4 | 8 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------GUGCCUU---------- | 3 | novel | |
| seed | ---------------------------------CGAAUCC------------------- | 2 | novel | |
| seed | -------------GCAAAGG--------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -----------------------------------------TGTGCCTTCAGATGCCCC | 18 | - | 3 | |
| ------------TGCAAAGGGCTGGGCAGGGA--------------------------- | 20 | - | 1 | |
| --------------------------------TCGAATCCCTGTGCCTTCAGATGCCC- | 26 | - | 1 | |
| --------------------------------TCGAATCCCTGTGCCTTCAGA------ | 21 | 1 | - | |
| rat | gggatgtcacagTGCAAAGGGCTGGGCAGGGATCGAATCCCTGTGCCTTCAGATGCCCC | |||
| *********************************************************** | ||||
| rat | (((..(((....((...(((((...((((((((...))))))))))))))))))..))) | 0.450 -20.70 | ||
| rat | chromosome:12:44312115:44312173:1 | intergenic |
sblock7290 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.063 | no | no | 0.38/0.58 | 19/25/0.60 | 1.3 2.5 | 1.0 3.0 | 3 2 | 0 0 | 1 1 | 0 0 | 4 0 | 5 -3 | 5arm 3arm | 1 1 | nd nd | 0.35 0.17 | 4 2 | 5 | 1 | -11 | -3 |
| reads | miRBase family seed | ||
| seed | -----GCCUGCA---------------------------------------------------------------- | 2 | novel |
| seed | ----------------------------------------------------UGGUGAU----------------- | 1 | novel |
| seed | ---------GCACAGU------------------------------------------------------------ | 1 | novel |
| seed | -----------------------------------------------UCCUUUG---------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----TGCCTGCACAGTTGTTCCAC---------------------------------------------------- | 20 | 2 | |
| --------TGCACAGTTGTTCCACCGC------------------------------------------------- | 19 | 1 | |
| ---------------------------------------------------TTGGTGATGATATGATCAGGTAGGG | 25 | 1 | |
| ----------------------------------------------TTCCTTTGGTGATGATATGATCAG------ | 24 | 1 | |
| rat | acctTGCCTGCACAGTTGTTCCACCGCctaagcaccacccttaaacTTCCTTTGGTGATGATATGATCAGGTAGGG | ||
| **************************************************************************** | |||
| rat | .(((((((((....(((((..((.((((.(((.................))).)))).))..)))))))))))))) | 0.890 -19.93 |
| rat | chromosome:20:22750768:22750843:1 | intergenic |
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