other hairpins
novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap (6 loci)
sblock7310 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.119 | no | no | 0.26/0.57 | 18/23/0.62 | 0.0 0.0 0.0 2.5 | 0.0 0.0 0.0 4.8 | 2 1 1 4 | 0 0 0 0 | 1 1 1 3 | 0 0 0 0 | 0 13 18 3 | 14 0 -7 -1 | 5arm 5arm 3arm_loop 3arm | 1 1 1 2 | nd nd nd nd | 0.55 0.35 0.42 0.28 | 7 4 6 3 | 8 | 3 | 0 | -16 |
| reads | miRBase family seed | ||||
| seed | -AAUUAGG----------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------------CCUUUUG------------------ | 2 | novel | ||
| seed | -------------------------------------------GCCUUCC----------------------- | 2 | novel | ||
| seed | -------------------------------------CGAUGUG----------------------------- | 1 | novel | ||
| seed | --------------GGUACUG---------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| TAATTAGGAGCTGTGGTACTGT--------------------------------------------------- | 22 | - | - | 2 | |
| ------------------------------------TCGATGTGCCTTCCTTTTG------------------ | 19 | - | - | 1 | |
| -----------------------------------------------TCCTTTTGTAAAGAAATGACCAG--- | 23 | 1 | - | - | |
| ------------------------------------------TGCCTTCCTTTTGTAAAG------------- | 18 | - | - | 1 | |
| -----------------------------------------------TCCTTTTGTAAAGAAATGA------- | 19 | - | - | 1 | |
| -------------TGGTACTGTGTCAGTGGGAGGGT------------------------------------- | 23 | - | - | 1 | |
| ------------------------------------------TGCCTTCCTTTTGTAAAGAAA---------- | 21 | - | 1 | - | |
| rat | TAATTAGGAGCTGTGGTACTGTGTCAGTGGGAGGGTTCGATGTGCCTTCCTTTTGTAAAGAAATGACCAGctg | ||||
| ************************************************************************* | |||||
| ----------------------------------------------------------------------------------- | ENSRNOT00000035355 ENSRNOG00000023712 Stox1_predicted | ||||
| rat | ........((((((.((.((....(((.((((((((.......)))))))).)))...))..)).)).)))). | 0.970 -20.00 | |||
| rat | chromosome:20:29928332:29928404:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000035355|ENSRNOG00000023712 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000057578|ENSRNOG00000023712 ## ENSRNOG00000023712|protein_coding|Stox1_predicted| |
sblock7875 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.154 | no | no | 0.68/0.84 | 19/22/0.60 | 2.0 1.5 | 2.7 0.0 | 3 2 | 0 0 | 3 2 | 0 0 | 0 0 | -4 0 | 5arm_loop 3arm | 1 1 | nd nd | 0.21 0.29 | 1 3 | 5 | 5 | 1 | 0 |
| reads | miRBase family seed | ||||||
| seed | ----CCGCUCG----------------------------------- | 2 | novel | ||||
| seed | -------------------------UCCACAG-------------- | 1 | novel | ||||
| seed | ----------------------------ACAGUGG----------- | 1 | novel | ||||
| seed | -AGGCCGC-------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| ---GCCGCTCGGTGCGGGGGAAC----------------------- | 20 | 1 | - | - | - | 1 | |
| GAGGCCGCTCGGTGCGGGG--------------------------- | 19 | - | - | 1 | - | - | |
| ---------------------------CACAGTGGCGGTGCTCCTC | 19 | - | - | - | 1 | - | |
| ------------------------CTCCACAGTGGCGGTGCTCCTC | 22 | - | 1 | - | - | - | |
| rat | GAGGCCGCTCGGTGCGGGGGAACtCTCCACAGTGGCGGTGCTCCTC | ||||||
| ********************************************** | |||||||
| rat | ((((((((.((.((.((((.....)))).)).))))))).)))... | 1.000 -20.90 | |||||
| rat | chromosome:3:25455551:25455596:1 | intergenic |
sblock8353 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.112 | no | no | 0.42/0.61 | 18/25/0.57 | 3.0 0.0 0.0 0.0 | 3.8 0.0 0.0 0.0 | 4 1 1 1 | 0 0 0 0 | 3 1 1 1 | 0 0 0 0 | 4 19 26 3 | -4 -10 -18 11 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.33 0.42 0.60 0.28 | 5 4 6 3 | 7 | 4 | 7 | 4 |
| reads | miRBase family seed | |||||
| seed | --------CCAUUCU------------------------------------------------- | 2 | novel | |||
| seed | --------------------AGCAAUA------------------------------------- | 1 | novel | |||
| seed | -----CCGCCAU---------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------CGGUCGU------------------------------ | 1 | novel | |||
| seed | -----------UUCUCAG---------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------CCUAGCU------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T3S2 | |||
| -------------------AAGCAATACGGTCGTATAG-------------------------- | 19 | - | 1 | - | - | |
| -------GCCATTCTCAGCAAGCAATACGGTC-------------------------------- | 25 | - | - | - | 1 | |
| --------------------------ACGGTCGTATAGTCCCTGCC------------------ | 20 | - | - | - | 1 | |
| -------------------------------------------GCCTAGCTGATGCGGATG--- | 18 | 1 | - | - | - | |
| ----ACCGCCATTCTCAGCAAGCAA--------------------------------------- | 21 | - | 1 | - | - | |
| ----------ATTCTCAGCAAGCAATACGG---------------------------------- | 20 | - | - | - | 1 | |
| -------GCCATTCTCAGCAAGCAATAC------------------------------------ | 21 | - | - | 1 | - | |
| rat | gtcgACCGCCATTCTCAGCAAGCAATACGGTCGTATAGTCCCTGCCTAGCTGATGCGGATGata | |||||
| **************************************************************** | ||||||
| rat | ((((.((((.....(((((..(((((((....))))......)))...))))).)))).)))). | 0.980 -17.50 | ||||
| rat | chromosome:4:21329216:21329279:-1 | intergenic |
sblock10873 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.100 | no | no | 0.39/0.61 | 18/25/0.33 | 1.3 2.3 | 2.7 0.0 | 3 3 | 0 0 | 1 2 | 0 0 | 0 0 | -7 -3 | 5arm_loop_3arm 3arm | 1 2 | nd nd | 0.26 0.17 | 2 2 | 6 | 2 | -1 | 0 |
| reads | miRBase family seed | |||
| seed | ----GCGCAGG------------------------------------ | 1 | novel | |
| seed | --------------------------GGCUCUU-------------- | 1 | novel | |
| seed | -GAAGCGC--------------------------------------- | 1 | novel | |
| seed | -----------------------------UCUUUCU----------- | 1 | novel | |
| seed | --AAGCGCA-------------------------------------- | 1 | novel | |
| seed | ------------------------------CUUUCUU---------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ---AGCGCAGGGATCGAAGAGGAAGAGG------------------- | 25 | - | 1 | |
| -GAAGCGCAGGGATCGAAGA--------------------------- | 19 | - | 1 | |
| -------------------------AGGCTCTTTCTTCTAGCCTTCT | 22 | - | 1 | |
| GGAAGCGCAGGGATCGAAGAGGA------------------------ | 23 | - | 1 | |
| -----------------------------TCTTTCTTCTAGCCTTCT | 18 | 1 | - | |
| ----------------------------CTCTTTCTTCTAGCCTTCT | 19 | - | 1 | |
| rat | GGAAGCGCAGGGATCGAAGAGGAAGAGGCTCTTTCTTCTAGCCTTCT | |||
| *********************************************** | ||||
| rat | (((((.((..(((..((((((.......))))))..))).))))))) | 1.000 -14.60 | ||
| rat | chromosome:7:96035514:96035560:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap (6 loci)
sblock12669 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.244 | no | no | 0.72/0.79 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 3 1 | -2 -2 | 5arm_loop 3arm_loop | 2 2 | nd nd | 0.37 0.28 | 3 2 | 2 | 2 | 0 | -1 |
| reads | miRBase family seed | |||
| seed | ----------------------------------UGGGUGU----------- | 1 | novel | |
| seed | ----GGGACGC----------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ---------------------------------CTGGGTGTGAGGCCTCGC- | 18 | - | 1 | |
| ---AGGGACGCCTCCAGCCCCG------------------------------ | 19 | 1 | - | |
| rat | agcAGGGACGCCTCCAGCCCCGaacttgaaatgCTGGGTGTGAGGCCTCGCt | |||
| **************************************************** | ||||
| rat | ...((.((.(((((..((((...............))))..))))).)).)) | 1.000 -17.06 | ||
| rat | chromosome:X:58816000:58816051:-1 | intergenic |
sblock4187 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.54/0.56 | 18/24/0.67 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 0 2 | 0 -2 | 5arm 3arm_loop | 1 1 | nd nd | 0.33 0.17 | 4 2 | 3 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -CCUCUUG------------------------------------- | 2 | novel | |
| seed | --------------------------CCUGCAG------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S2 | |||
| GCCTCTTGTCTTCTGACCTGTCAG--------------------- | 24 | - | 2 | |
| -------------------------ACCTGCAGTCTAGGAGGA-- | 18 | 1 | - | |
| rat | GCCTCTTGTCTTCTGACCTGTCAGcACCTGCAGTCTAGGAGGAgg | |||
| ********************************************* | ||||
| ------------------------------------------------------- | ENSRNOT00000046411 ENSRNOG00000033976 | |||
| rat | .((((....((((((..(((.(((...))))))..)))))))))) | 0.990 -14.00 | ||
| rat | chromosome:14:5494296:5494340:1 | Opposite_strand|Intronic_coding|ENSRNOT00000046411|ENSRNOG00000033976 ## ENSRNOG00000033976|protein_coding|| |
sblock7481 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.036 | no | no | 0.39/0.58 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 0 -1 | 5arm 3arm | 1 1 | nd nd | 0.26 0.18 | 4 2 | 2 | 2 | -1 | 0 |
| reads | miRBase family seed | |||
| seed | -GGGGUCU------------------------------------------- | 1 | novel | |
| seed | ----------------------------------GGGAGUU---------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| ---------------------------------TGGGAGTTTTCAATCCTT | 18 | - | 1 | |
| TGGGGTCTCAGAAACTCCC-------------------------------- | 19 | 1 | - | |
| rat | TGGGGTCTCAGAAACTCCCtagtccctgtgttaTGGGAGTTTTCAATCCTT | |||
| *************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000039410 ENSRNOG00000025278 LOC690538 | |||
| rat | .(((((....(((((((((...............)))))))))..))))). | 1.000 -15.16 | ||
| rat | chromosome:3:18903569:18903619:-1 | Same_strand|Intronic_coding|ENSRNOT00000039410|ENSRNOG00000025278 ## ENSRNOG00000025278|protein_coding|LOC690538| |
sblock78 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.022 | no | no | 0.60/0.78 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 3 | -2 4 | 5arm_loop 3arm | 1 1 | nd nd | 0.30 0.44 | 3 4 | 2 | 2 | 5 | -1 |
| reads | miRBase family seed | |||
| seed | ---GCAGCGA-------------------------------------- | 1 | novel | |
| seed | ----------------------------UACCCGA------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| ---------------------------CTACCCGAGCGCGCAGGC--- | 18 | 1 | - | |
| --AGCAGCGAGCGGAGCAGAAA-------------------------- | 20 | - | 1 | |
| rat | ggAGCAGCGAGCGGAGCAGAAActttgCTACCCGAGCGCGCAGGCtct | |||
| ************************************************ | ||||
| rat | (((((.(((..(((((((((...))))))..)))..)))....))))) | 1.000 -21.20 | ||
| rat | chromosome:1:37958846:37958893:-1 | intergenic ## {SimpF: 1 Eponine,oe = 0.79 -1 CpG} |
sblock9371 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.272 | no | no | 0.53/0.61 | 18/19/0.00 | 0.0 0.0 | 0.0 0.5 | 2 2 | 0 0 | 2 1 | 0 0 | 1 0 | 3 -2 | 5arm 3arm_loop | 1 1 | nd nd | 0.39 0.17 | 4 1 | 4 | 2 | -5 | 1 |
| reads | miRBase family seed | |||
| seed | --CUUCAUC------------------------------------ | 2 | novel | |
| seed | ---------------------------CAGUUUG----------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -CCTTCATCCACGAGGCAG-------------------------- | 18 | 1 | 1 | |
| --------------------------GCAGTTTGTTGGGTTGGGT | 19 | - | 1 | |
| --------------------------GCAGTTTGTTGGGTTGGG- | 18 | - | 1 | |
| rat | cCCTTCATCCACGAGGCAGgctctgaGCAGTTTGTTGGGTTGGGT | |||
| ********************************************* | ||||
| rat | (((...(((((....(((((((......)))))))))))).))). | 1.000 -13.20 | ||
| rat | chromosome:5:106781881:106781925:-1 | intergenic |
sblock9449 [novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.235 | no | no | 0.37/0.44 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 0 | -2 12 | 5arm_loop 3arm | 1 1 | nd nd | 0.28 0.72 | 3 13 | 2 | 1 | 13 | 9 |
| reads | miRBase family seed | ||
| seed | -----------------------------------GAGAGCA----------- | 1 | novel |
| seed | ---UGCAAAU------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --TTGCAAATGAGTGTCTCC--------------------------------- | 18 | 1 | |
| ----------------------------------TGAGAGCACTTACTAGTTA | 19 | 1 | |
| rat | ctTTGCAAATGAGTGTCTCCctagtgcagtcgttTGAGAGCACTTACTAGTTA | ||
| ***************************************************** | |||
| rat | ((((.(((((((.(((((....)).))).)))))))))))............. | 0.720 -11.30 |
| rat | chromosome:5:114562170:114562222:-1 | intergenic |
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