other hairpins
novel_lenNOK_multiarm_DicerNOK_shortStem_loopOverlap (6 loci)
novel_lenNOK_multiarm_DicerOK_nonpairedHIGH (6 loci)
sblock12555 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.684 | no | no | 0.32/0.53 | 19/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 22 23 12 | 7 8 19 | 5arm 3arm 3arm | 2 3 4 | nd nd nd | 0.47 0.37 0.58 | 4 3 3 | 3 | 1 | 2 | 3 |
| reads | miRBase family seed | ||
| seed | -----------------------AGACAGA------------------------------------------------------------------------------ | 1 | novel |
| seed | -------------------------------------------------------------------CUCGGAA---------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------CAUAAUU----------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------TAGACAGAAGACCGGGCAA------------------------------------------------------------------- | 19 | 1 | |
| ------------------------------------------------------------------ACTCGGAATTCTCATAATT----------------------- | 19 | 1 | |
| -----------------------------------------------------------------------------TCATAATTGCGAACACTAG------------ | 19 | 1 | |
| rat | gtggggcagtgggggttgccacTAGACAGAAGACCGGGCAAtgaagttagttcaaaaaaacaaaaaACTCGGAATTCTCATAATTGCGAACACTAGgcattagttcca | ||
| ************************************************************************************************************ | |||
| rat | .((((((((((.((.((((...((...((((..(((((.......(((..........)))......)))))..))))..))...))))...))...)))).)))))) | 0.540 -20.32 |
| rat | chromosome:9:104949047:104949154:1 | intergenic ## {Repeats: dust 104949100 104949101 0 class=dust} |
sblock3181 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.928 | no | no | 0.37/0.63 | 18/21/0.62 | 0.0 0.0 | 0.0 0.0 | 4 1 | 0 0 | 1 1 | 0 0 | 20 11 | 0 3 | 5arm_loop 3arm | 1 1 | nd nd | 0.33 0.32 | 2 2 | 8 | 1 | 3 | 3 |
| reads | miRBase family seed | ||
| seed | ---------------------GAGCGCU---------------------------------------------------- | 5 | novel |
| seed | ----------------------------GUGUUUG--------------------------------------------- | 1 | novel |
| seed | ---------------------------------------------------CCCAAUC---------------------- | 1 | novel |
| seed | ------------------------CGCUGUG------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------TGAGCGCTGTGTTTGTAGTGT--------------------------------------- | 21 | 4 | |
| --------------------TGAGCGCTGTGTTTGTAG------------------------------------------ | 18 | 1 | |
| --------------------------------------------------TCCCAATCAAGGGCCAGGC----------- | 19 | 1 | |
| -----------------------GCGCTGTGTTTGTAGTGTAC------------------------------------- | 20 | 1 | |
| ---------------------------TGTGTTTGTAGTGTACCTA---------------------------------- | 19 | 1 | |
| rat | ccacttcgtggcatggggaaTGAGCGCTGTGTTTGTAGTGTacctaagcatcccaatcaagggccaggcgtgctggatgg | ||
| ******************************************************************************** | |||
| rat | (((.(((..((((((.....((.((.((.((.(((..((((......))))..))).)))).))))..)))))))))))) | 0.780 -20.00 |
| rat | chromosome:11:84965914:84965993:1 | intergenic |
sblock7080 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.149 | no | no | 0.44/0.50 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 3 1 | 0 0 | 16 20 | 4 8 | 5arm 3arm | 1 2 | nd nd | 0.33 0.50 | 2 3 | 4 | 4 | 1 | 1 |
| reads | miRBase family seed | |||||
| seed | -----------------GUUUGGG---------------------------------------------------------------- | 3 | novel | |||
| seed | ---------------------------------------------------UCUUUGG------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T4S2 | |||
| ----------------TGTTTGGGCTTGGGGTTT------------------------------------------------------ | 18 | 1 | - | 1 | 1 | |
| --------------------------------------------------TTCTTTGGGGTTTGGCTT-------------------- | 18 | - | 1 | - | - | |
| rat | aaagccatcattctgaTGTTTGGGCTTGGGGTTTaaggtttgctttgatcTTCTTTGGGGTTTGGCTTgctggtttgttggggttttg | |||||
| **************************************************************************************** | ||||||
| -------------------------------------------------------------------------------------------------- | ENSRNOT00000042972 ENSRNOG00000029682 Clic1 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000001113 ENSRNOG00000000839 Nfkbil1 | |||||
| rat | ((((((..((..((...((..((.((..(((.((((((....))))))....)))..)).))..)).....))..))....)))))). | 0.730 -18.70 | ||||
| rat | chromosome:20:3632802:3632889:1 | Same_strand|Intronic_coding|ENSRNOT00000001113|ENSRNOG00000000839 ## Opposite_strand|Intronic_coding|ENSRNOT00000042972|ENSRNOG00000029682 ## ENSRNOG00000000839|protein_coding|Nfkbil1|NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa B-like) (I- kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1). [Source:UniProtKB/Swiss-Prot;Acc:Q8R2H1] ## ENSRNOG00000029682|protein_coding|Clic1|chloride intracellular channel 1 [Source:RefSeq_peptide;Acc:NP_001002807] |
sblock8914 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.210 | no | no | 0.47/0.63 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 8 6 | 3 7 | 5arm 3arm | 1 1 | nd nd | 0.37 0.32 | 3 3 | 3 | 2 | 2 | 3 |
| reads | miRBase family seed | |||
| seed | ---------CCUGACG--------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------AGCAGUG----------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| --------TCCTGACGTCTCTGCCTGC---------------------------------------- | 19 | 2 | - | |
| ------------------------------------------AAGCAGTGTGTCACCTGAA------ | 19 | - | 1 | |
| rat | agccaggtTCCTGACGTCTCTGCCTGCtgaagttttctggtaAAGCAGTGTGTCACCTGAAttgcta | |||
| ******************************************************************* | ||||
| rat | ((((((((....((((...((((.((((((.....)).))))..))))..)))))))))....))). | 1.000 -16.20 | ||
| rat | chromosome:4:62304179:62304245:1 | intergenic |
sblock9315 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.47/0.53 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 26 27 | 5 5 | 5arm 3arm | 2 2 | nd nd | 0.42 0.37 | 4 2 | 2 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ---------------------------AUGCAAA------------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------------GCUGCCC-------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S1 | |||
| ------------------------------------------------------------TGCTGCCCCTTTCACATCA--------------------------- | 19 | - | 1 | |
| --------------------------GATGCAAAGAGGTTGGATC------------------------------------------------------------- | 19 | 1 | - | |
| rat | cttcttttagctgtttaacttcgtaaGATGCAAAGAGGTTGGATCaagtttaaatgactgTGCTGCCCCTTTCACATCAaagaagcagaactgctgaccaggaagg | |||
| ********************************************************************************************************** | ||||
| rat | (((((((((((.((((..((((....((((.((((.((..((....((((.....))))...))..))))))..))))...))))..)))).)))))..)))))). | 1.000 -29.90 | ||
| rat | chromosome:5:59582094:59582199:-1 | intergenic |
sblock9778 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.647 | no | no | 0.47/0.56 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 6 | 1 2 | 5arm 3arm | 1 1 | nd nd | 0.39 0.37 | 3 3 | 2 | 2 | 1 | 3 |
| reads | miRBase family seed | |||
| seed | -------------------------------------GUCACCA----------------- | 1 | novel | |
| seed | ---------UCGAGUC--------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T4S2 | |||
| --------GTCGAGTCATGTCCACAG----------------------------------- | 18 | - | 1 | |
| ------------------------------------AGTCACCATGTTTCTCTGG------ | 19 | 1 | - | |
| rat | gccatacaGTCGAGTCATGTCCACAGaagtcgtctcAGTCACCATGTTTCTCTGGgatggt | |||
| ************************************************************* | ||||
| rat | (((((.(((..(((.((((...((.((.......)).))...)))).))).)))..))))) | 0.960 -12.40 | ||
| rat | chromosome:5:121098436:121098496:1 | intergenic |
novel_lenNOK_multiarm_Multihit_nonpairedHIGH (6 loci)
sblock1389 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.37/0.50 | 19/20/0.29 | 0.7 0.0 0.0 | 0.3 0.0 0.0 | 3 2 2 | 0 0 0 | 2 2 1 | 0 0 0 | 2 11 27 | 33 26 8 | 5arm 5arm 3arm | 33 33 45 | nd nd nd | 0.45 0.42 0.42 | 5 3 5 | 7 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------CCAGUAA--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---GUGCUAG------------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------------------------------GGUGUUU-------------------------------------- | 2 | novel | ||
| seed | -----GCUAGGA---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA--------------------------- | 19 | - | - | 2 | |
| -----------ACCAGTAACCTATGGAAGA---------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --TGTGCTAGGACCAGTAACCT------------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| ----TGCTAGGACCAGTAACCTA----------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| rat | tgTGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGAtgaacttcaggtgaatggatgcattca | ||||
| ********************************************************************************************************************** | |||||
| rat | ((.((((.....(((...((((...((((..(((((..((((((((((((.(((((........))))))).)))))).....))))...)))))))))))))...)))..)))).)) | 0.990 -33.80 | |||
| rat | chromosome:1:51022703:51022820:1 | intergenic |
sblock1563 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.075 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 0 9 30 13 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.32 0.42 0.32 0.35 | 3 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------CCAGUAA------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -GUGCUAG--------------------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------GGUGUUU----------------------------------------- | 2 | novel | ||
| seed | ---GCUAGGA------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------GAUAAAC------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| TGTGCTAGGACCAGTAACCT--------------------------------------------------------------------------------------------------- | 20 | - | - | 2 | |
| ----------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA------------------------------ | 19 | - | - | 2 | |
| ---------ACCAGTAACCTATGGAAGA------------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG------------- | 20 | - | - | 1 | |
| --TGCTAGGACCAGTAACCTA-------------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| rat | TGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgattcattcagct | ||||
| *********************************************************************************************************************** | |||||
| --------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||||
| rat | ...(((.((((((...((((...((((...((((..((((((((((((.(((((........))))))).)))))).....))))))))....))))))))...))).)))....))). | 0.980 -32.10 | |||
| rat | chromosome:1:51999067:51999185:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1673 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.075 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 0 9 30 13 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.32 0.42 0.32 0.35 | 3 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------CCAGUAA------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -GUGCUAG--------------------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------GGUGUUU----------------------------------------- | 2 | novel | ||
| seed | ---GCUAGGA------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------GAUAAAC------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| TGTGCTAGGACCAGTAACCT--------------------------------------------------------------------------------------------------- | 20 | - | - | 2 | |
| ----------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA------------------------------ | 19 | - | - | 2 | |
| ---------ACCAGTAACCTATGGAAGA------------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG------------- | 20 | - | - | 1 | |
| --TGCTAGGACCAGTAACCTA-------------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| rat | TGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgattcattcagct | ||||
| *********************************************************************************************************************** | |||||
| --------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | ||||
| rat | ...(((.((((((...((((...((((...((((..((((((((((((.(((((........))))))).)))))).....))))))))....))))))))...))).)))....))). | 0.980 -32.10 | |||
| rat | chromosome:1:52815825:52815943:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
sblock323 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 0 9 30 13 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.32 0.42 0.32 0.35 | 3 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------CCAGUAA------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -GUGCUAG--------------------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------GGUGUUU----------------------------------------- | 2 | novel | ||
| seed | ---GCUAGGA------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------GAUAAAC------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| TGTGCTAGGACCAGTAACCT--------------------------------------------------------------------------------------------------- | 20 | - | - | 2 | |
| ----------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA------------------------------ | 19 | - | - | 2 | |
| ---------ACCAGTAACCTATGGAAGA------------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG------------- | 20 | - | - | 1 | |
| --TGCTAGGACCAGTAACCTA-------------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| rat | TGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaaggTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgattcattcagct | ||||
| *********************************************************************************************************************** | |||||
| rat | ...(((.((((((...((((...((((...((((..(((((((((((..(((((........)))))..))))))).....))))))))....))))))))...))).)))....))). | 0.980 -37.50 | |||
| rat | chromosome:1:50357004:50357122:-1 | intergenic |
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