other hairpins
novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH (6 loci)
sblock7432 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.084 | no | no | 0.45/0.52 | 19/23/0.80 | 0.0 0.0 0.5 0.0 | 0.0 0.0 0.0 0.0 | 1 1 2 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 37 48 22 11 | -6 -16 4 13 | 5arm_loop 5arm_loop_3arm 3arm 3arm | 11 11 11 11 | nd nd nd nd | 0.60 0.42 0.38 0.35 | 7 7 3 3 | 5 | 4 | 0 | 15 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------GGAAAUG------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------AGCUUUG---------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------------------GUGAAGC-------------------------- | 1 | novel | |||
| seed | --------------------------------------GUCAAGU------------------------------------------------------------ | 1 | novel | |||
| seed | ---------------------------------------------------------------AAGCUUU----------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S2 | T4S2 | |||
| -----------------------------------------------------------------------AGTGAAGCTCTGCCTGGAGACAA----------- | 23 | - | - | - | 1 | |
| ------------------------------------------------TGGAAATGCACCATGAAGC-------------------------------------- | 19 | 1 | - | - | - | |
| --------------------------------------------------------------GAAGCTTTGAGTGAAGCTCTG---------------------- | 21 | 1 | - | - | - | |
| ---------------------------------------------------------------AAGCTTTGAGTGAAGCTCTG---------------------- | 20 | - | 1 | - | - | |
| -------------------------------------AGTCAAGTCTGTGGAAATGC------------------------------------------------ | 20 | - | - | 1 | - | |
| rat | tggtggttacctttgctccagtcaatgtaacaactgaAGTCAAGTCTGTGGAAATGCACCATGAAGCTTTGAGTGAAGCTCTGCCTGGAGACAAtgtggccttca | |||||
| ********************************************************************************************************* | ||||||
| rat | .((.((((((..(((((((((.((..((....((((((((....((.((((.......)))))).))))).)))...))..)).)))))).))).)))))).)). | 0.910 -31.00 | ||||
| rat | chromosome:3:2407437:2407541:-1 | intergenic |
sblock8589 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.443 | no | no | 0.43/0.58 | 19/23/0.75 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 5 15 22 18 | 1 -8 -13 -10 | 5arm 5arm_loop 5arm_loop_3arm 3arm_loop | 4 8 12 12 | nd nd nd nd | 0.35 0.55 0.75 0.58 | 3 9 13 9 | 4 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | ----------------AAUGCUG---------------------------------------------- | 1 | novel | |||
| seed | ------CAAAGAU-------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------CAUCAAG----------------------------- | 1 | novel | |||
| seed | -----------------------CCAUUGC--------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S1 | T5S1 | |||
| -----CCAAAGATGTCAATGCTGCCATT----------------------------------------- | 23 | - | - | - | 1 | |
| --------------------------------CCATCAAGACCAAGCGCAG------------------ | 19 | 1 | - | - | - | |
| ---------------CAATGCTGCCATTGCCACCATC-------------------------------- | 22 | - | 1 | - | - | |
| ----------------------GCCATTGCCACCATCAAGAC--------------------------- | 20 | - | - | 1 | - | |
| rat | ggttcCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGCAGcatccagcttgtggactg | |||||
| ********************************************************************* | ||||||
| rat | (((((...(((.((...(((((((..(((.............)))..))))))).)).)))..))))). | 0.940 -15.12 | ||||
| rat | chromosome:4:136613965:136614033:-1 | intergenic |
sblock11101 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.497 | no | no | 0.55/0.62 | 20/26/0.75 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 8 31 21 | 7 -10 5 | 5arm 5arm_loop_3arm 3arm | 12 12 12 | nd nd nd | 0.31 0.65 0.50 | 3 4 7 | 4 | 3 | -2 | -13 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------GGCAGAG--------------------------------- | 2 | novel | ||
| seed | ---------GUGGUGC--------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------ACCAAGA---------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S2 | T5S1 | |||
| --------------------------------------------------CGGCAGAGAAACGGTGTCAG--------------------- | 20 | - | - | 2 | |
| --------GGTGGTGCAGGGGTTGGTTCCATGAC--------------------------------------------------------- | 26 | - | 1 | - | |
| -------------------------------GACCAAGATCTACGGAGGAC---------------------------------------- | 20 | 1 | - | - | |
| rat | acctccgtGGTGGTGCAGGGGTTGGTTCCATGACCAAGATCTACGGAGGACGGCAGAGAAACGGTGTCAGgcccagccacttcagcagagg | ||||
| ******************************************************************************************* | |||||
| rat | .((((.((((((((...(((.((((..((.((.((....((....))....)))).......))..)))).))).))))))...)).)))) | 0.420 -30.00 | |||
| rat | chromosome:7:925305:925395:1 | intergenic |
sblock1756 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.497 | no | no | 0.55/0.62 | 20/26/0.75 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 8 31 21 | 7 -10 5 | 5arm 5arm_loop_3arm 3arm | 12 12 12 | nd nd nd | 0.31 0.65 0.50 | 3 4 7 | 4 | 3 | -2 | -13 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------GGCAGAG--------------------------------- | 2 | novel | ||
| seed | ---------GUGGUGC--------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------ACCAAGA---------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S2 | T5S1 | |||
| --------------------------------------------------CGGCAGAGAAACGGTGTCAG--------------------- | 20 | - | - | 2 | |
| --------GGTGGTGCAGGGGTTGGTTCCATGAC--------------------------------------------------------- | 26 | - | 1 | - | |
| -------------------------------GACCAAGATCTACGGAGGAC---------------------------------------- | 20 | 1 | - | - | |
| rat | acctccgtGGTGGTGCAGGGGTTGGTTCCATGACCAAGATCTACGGAGGACGGCAGAGAAACGGTGTCAGgcccagccacttcagcagagg | ||||
| ******************************************************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000036365 ENSRNOG00000021800 NP_001100928.1 | ||||
| ----------------------------------------------------------------------------------------------------- | ENSRNOT00000017353 ENSRNOG00000011346 Ehd2 | ||||
| ----------------------------------------------------------------------------------------------------- | ENSRNOT00000052231 ENSRNOG00000011346 Ehd2 | ||||
| rat | .((((.((((((((...(((.((((..((.((.((....((....))....)))).......))..)))).))).))))))...)).)))) | 0.420 -30.00 | |||
| rat | chromosome:1:76260741:76260831:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000052231|ENSRNOG00000011346 ## Same_strand|Boundary_non-coding|ENSRNOT00000058241|ENSRNOG00000021800 ## Same_strand|Intronic_coding|ENSRNOT00000036365|ENSRNOG00000021800 ## ENSRNOG00000011346|protein_coding|Ehd2|60S ribosomal protein L9. [Source:UniProtKB/Swiss-Prot;Acc:P17077] ## ENSRNOG00000021800|protein_coding|NP_001100928.1|zinc finger protein 541 [Source:RefSeq_peptide;Acc:NP_001100928] |
novel_multiarm_DicerNOK_randfoldOK_nonpairedHIGH (6 loci)
sblock10142 [novel_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.33/0.40 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 11 2 | 20 37 | 5arm 3arm | 1 1 | nd nd | 0.35 0.54 | 3 9 | 2 | 2 | 0 | 11 |
| reads | miRBase family seed | |||
| seed | ------------UUCUGUG--------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------------UGCGUUU------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -----------TTTCTGTGTTTTGGGGGTTT--------------------------------------------------------------------------------------- | 20 | 1 | - | |
| --------------------------------------------------------------------------------------------TTGCGTTTTTAGAGTGAATTTGGA-- | 24 | - | 1 | |
| rat | gttttatttgcTTTCTGTGTTTTGGGGGTTTgggggatggttttcttcaggcttctctgaagatcactcccctccccctatttattttcagcTTGCGTTTTTAGAGTGAATTTGGAta | |||
| ********************************************************************************************************************** | ||||
| rat | ((((.(((..(((((((.((...(((((...((((..(((...((((((((....)))))))))))..)))).))))).....))...)))...........))))..)))..)))). | 0.460 -36.30 | ||
| rat | chromosome:6:122577627:122577744:-1 | intergenic |
sblock11774 [novel_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.50/0.55 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 6 | 12 5 | 5arm 3arm | 1 1 | nd nd | 0.35 0.45 | 3 8 | 2 | 2 | -11 | -9 |
| reads | miRBase family seed | |||
| seed | -GCCAUAG-------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------GGGAUCA-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------------------TGGGATCACACATGGTTTGGGG------ | 22 | 1 | - | |
| TGCCATAGTCCTTGATCCAC-------------------------------------------------- | 20 | - | 1 | |
| rat | TGCCATAGTCCTTGATCCACacacccagaaaaagaaattttcTGGGATCACACATGGTTTGGGGtgatgg | |||
| ********************************************************************** | ||||
| rat | ..((((...((((((.(((....(((((((((.....)))))))))........))).))))))..)))) | 0.980 -22.00 | ||
| rat | chromosome:8:72060709:72060778:-1 | intergenic |
sblock5598 [novel_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.40/0.65 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 19 23 | 10 10 | 5arm 3arm | 1 1 | nd nd | 0.35 0.35 | 2 3 | 2 | 2 | 0 | -1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------CAGAAAC----------------------------------- | 1 | novel | |
| seed | --------------------GGCUGGG--------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| -----------------------------------------------------------------GCAGAAACATAGAACTACAC----------------------- | 20 | 1 | - | |
| -------------------AGGCTGGGGCTGGGTTCTGT--------------------------------------------------------------------- | 20 | - | 1 | |
| rat | ctgtgaaggttagtggctcAGGCTGGGGCTGGGTTCTGTacctgggatggtagagcatggcagagGCAGAAACATAGAACTACACtgagcaggacttagggatacagg | |||
| ************************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000024716 ENSRNOG00000018342 Gm672 | |||
| rat | (((((.(((((....((((((..(((..(((..((((((..(((..(((......)))..)))..))))))...)))..)))..))))))..))))).....))))). | 1.000 -37.40 | ||
| rat | chromosome:18:72519880:72519987:-1 | Same_strand|Intronic_coding|ENSRNOT00000024716|ENSRNOG00000018342 ## ENSRNOG00000018342|protein_coding|Gm672|gene model 672, (NCBI) Gene [Source:MGI Symbol;Acc:MGI:2685518] |
sblock625 [novel_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.37/0.40 | 19/20/0.75 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 22 29 | 8 3 | 5arm 3arm | 1 1 | nd nd | 0.35 0.37 | 3 3 | 4 | 1 | -6 | -7 |
| reads | miRBase family seed | ||
| seed | -----------------------GCCAUGU--------------------------------------------------------------------------- | 3 | novel |
| seed | ----------------------------------------------------------AUACACA---------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------TGCCATGTATTAAGAGGTTG--------------------------------------------------------------- | 20 | 3 | |
| ---------------------------------------------------------TATACACAGAGTCTTATGC----------------------------- | 19 | 1 | |
| rat | gctgagaggctgtatgaaacccTGCCATGTATTAAGAGGTTGcatataagacaactaTATACACAGAGTCTTATGCcaaggtcagacagccacagtctgtcagca | ||
| ********************************************************************************************************* | |||
| rat | (((((.(((((((........(((((.((...(((((..(((..((((((....)).))))..)))..)))))...)).)).)))......))))))).))))). | 0.510 -31.54 |
| rat | chromosome:1:102927165:102927269:-1 | intergenic |
sblock6688 [novel_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.36/0.52 | 21/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 25 28 | 4 13 | 5arm 3arm | 1 1 | nd nd | 0.38 0.45 | 3 5 | 4 | 1 | 8 | 9 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------GUACUGU------------------------------------------ | 3 | novel |
| seed | --------------------------GACCACU------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------------------------------TGTACTGTGAATTCTTCTTCTC---------------------------- | 22 | 3 | |
| -------------------------TGACCACTCAGCAGCTGTAAG----------------------------------------------------------------------- | 21 | 1 | |
| rat | ggggtctgagggggtctgagggaaaTGACCACTCAGCAGCTGTAAGcatcaaaagagcttagtacaaTGTACTGTGAATTCTTCTTCTCctactccttcctccnnnnnnnnnnnnnn | ||
| ********************************************************************************************************************* | |||
| rat | ((((...((((((((..(((((((.....(((...(((..(((((((.((....)))))...)))).)))...))).....)))).)))..)))))))))))).............. | 0.760 -28.80 |
| rat | chromosome:20:5501147:5501263:-1 | intergenic |
sblock8085 [novel_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.46/0.58 | 19/24/0.75 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 0 18 9 | 40 23 13 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.55 0.42 0.33 | 6 3 3 | 4 | 2 | -8 | -2 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------CCACUGC------------------------- | 2 | novel | |
| seed | -GCUUUUG------------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------GGGAUGA------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -----------------------------------------------------------------------------TCCACTGCCATGTCTTTTCTCCTT--------- | 24 | - | 2 | |
| ------------------TGGGATGAGTGTGGGCAGT------------------------------------------------------------------------- | 19 | - | 1 | |
| TGCTTTTGGCCTCTCTCCTG------------------------------------------------------------------------------------------ | 20 | 1 | - | |
| rat | TGCTTTTGGCCTCTCTCCTGGGATGAGTGTGGGCAGTtccagtgagggtctcacggaggcaagagtctatagagaccTCCACTGCCATGTCTTTTCTCCTTcaggaagcc | |||
| ************************************************************************************************************** | ||||
| rat | .......(((.....(((((((..(((...(((((....(((((..((((((....((((....))))...))))))..)))))...)))))...))).))))))).))) | 0.800 -42.20 | ||
| rat | chromosome:3:76978459:76978568:1 | intergenic |
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