other hairpins
novel_multiarm_DicerNOK_randfoldOK_nonpairedHIGH (6 loci)
novel_multiarm_Multihit_loopOverlap_nonpairedHIGH (6 loci)
block487542 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.342 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 50 34 | -18 1 | 5arm_loop_3arm 3arm | 14 14 | nd nd | 0.43 0.33 | 3 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------GGACUCC------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------------------CACUUUA----------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S2 | |||
| ---------------------------------------------------------CCACTTTATTCACTTCCAGCC---------------------------------- | 21 | - | 1 | |
| --------------------------------------------------GGGACTCCCACTTTATTCACT----------------------------------------- | 21 | 1 | - | |
| rat | tcccgaggatctgtatcttgcttcaacagtgtttggacggaacagacccaGGGACTCCCACTTTATTCACTTCCAGCCgccttacaagtctctccagtcacagcctccggga | |||
| **************************************************************************************************************** | ||||
| rat | ((((((((..((((..((.((((.....(((.(((((..(((.(((....(((...)))..))).)))...))))).))).....))))......))..)))))))).)))) | 0.530 -25.70 | ||
| rat | chromosome:15:36823708:36823819:1 | intergenic |
block847517 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.806 | no | no | 0.41/0.45 | 22/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 5 | -15 -2 | 5arm_loop_3arm 3arm_loop | 16 16 | nd nd | 0.45 0.41 | 5 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------GUGUUCU------------------- | 1 | novel |
| seed | ---------------------GGUUCAA----------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------TGTGTTCTAAGGCGAAGGAAAG----- | 22 | 1 | |
| --------------------TGGTTCAACTTGTGTTCTAAGG--------------- | 22 | 1 | |
| rat | gtgccagttcagcattgcccTGGTTCAACTTGTGTTCTAAGGCGAAGGAAAGtctac | ||
| ********************************************************* | |||
| rat | (((....(((....(((((.(((..((.....))..))).)))))..)))....))) | 0.500 -10.00 |
| rat | chromosome:1:52376988:52377044:-1 | intergenic |
block962076 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.855 | no | no | 0.41/0.45 | 22/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 5 | -15 -2 | 5arm_loop_3arm 3arm_loop | 16 16 | nd nd | 0.45 0.41 | 5 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------GUGUUCU------------------- | 1 | novel |
| seed | ---------------------GGUUCAA----------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------TGTGTTCTAAGGCGAAGGAAAG----- | 22 | 1 | |
| --------------------TGGTTCAACTTGTGTTCTAAGG--------------- | 22 | 1 | |
| rat | gtgccagttcagcattgccgTGGTTCAACTTGTGTTCTAAGGCGAAGGAAAGtctac | ||
| ********************************************************* | |||
| rat | (((....(((....(((((.(((..((.....))..))).)))))..)))....))) | 0.580 -10.00 |
| rat | chromosome:1:51209729:51209785:1 | intergenic |
block963388 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.806 | no | no | 0.41/0.45 | 22/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 5 | -15 -2 | 5arm_loop_3arm 3arm_loop | 16 16 | nd nd | 0.45 0.41 | 5 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------GUGUUCU------------------- | 1 | novel |
| seed | ---------------------GGUUCAA----------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------TGTGTTCTAAGGCGAAGGAAAG----- | 22 | 1 | |
| --------------------TGGTTCAACTTGTGTTCTAAGG--------------- | 22 | 1 | |
| rat | gtgccagttcagcattgcccTGGTTCAACTTGTGTTCTAAGGCGAAGGAAAGtctac | ||
| ********************************************************* | |||
| ------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | ||
| rat | (((....(((....(((((.(((..((.....))..))).)))))..)))....))) | 0.500 -10.00 |
| rat | chromosome:1:51661142:51661198:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
block1297568 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.089 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 50 32 | -18 1 | 5arm_loop_3arm 3arm | 14 14 | nd nd | 0.43 0.33 | 3 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------GGACUCC---------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------CACUUUA--------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S2 | |||
| --------------------------------------------------GGGACTCCCACTTTATTCACT--------------------------------------- | 21 | 1 | - | |
| ---------------------------------------------------------CCACTTTATTCACTTCCAGCC-------------------------------- | 21 | - | 1 | |
| rat | tccttaggacctgtatcttgcttcaacagtgtttggacggaacaaacccaGGGACTCCCACTTTATTCACTTCCAGCCaccttacaagtctctagttgcagcttctggga | |||
| ************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044649 ENSRNOG00000032875 | |||
| rat | ..(((((((.(((((.((.((((.....(((.(((((..(((.(((....(((...)))..))).)))...))))).))).....))))....)).))))).))))))). | 0.580 -26.20 | ||
| rat | chromosome:2:149806733:149806842:1 | Same_strand|Boundary_non-coding|ENSRNOT00000044208|ENSRNOG00000032875 ## Same_strand|Intronic_coding|ENSRNOT00000044649|ENSRNOG00000032875 ## ENSRNOG00000032875|protein_coding|| |
sblock5958 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.082 | no | no | 0.53/0.65 | 19/20/0.75 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 19 32 | 16 -4 | 5arm 3arm_loop | 20 20 | nd nd | 0.42 0.40 | 5 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------UGUGUGC-------------------------------------------- | 3 | novel | |
| seed | --------------------UCCGCAA------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S2 | |||
| ------------------------------------------------------------------GTGTGTGCCATTCCGGCGGT-------------------------------- | 20 | 3 | - | |
| -------------------ATCCGCAAAGCCACCAAGT-------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | ggccatcaagggtatgcatATCCGCAAAGCCACCAAGTatctgaaggatgtcactttaaagaagcaGTGTGTGCCATTCCGGCGGTataatggtggagtcggtaggtgcgcccaggcc | |||
| ********************************************************************************************************************** | ||||
| rat | ((((.....((((..((((..(((.....((((((..((((((..(((((.(((................))).))).))..))).))).))))))...)))...)))))))).)))) | 0.760 -39.89 | ||
| rat | chromosome:2:9738497:9738614:-1 | intergenic |
novel_Multihit_shortStem_randfoldOK_bulgeHIGH (5 loci)
block353696 [novel_Multihit_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 41 | 5arm | 25 | nd | 0.19 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --CUCCUUU--------------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -GCTCCTTTTGCAGAATAGACT-------------------------------------------------------------------------------------------------- | 21 | 1 | |
| rat | tGCTCCTTTTGCAGAATAGACTtacagcctgtggcttgccttggagacatagtagacaagcagttactgatggtaataatattttcaaggggagtggaagtaggtctgttttgttggagt | ||
| ************************************************************************************************************************ | |||
| rat | .(((((....(((((((((((((((..((....((((.(((((((((........((...(((...)))...)).......))))))))).))))))..))))))))))))))).))))) | 0.610 -46.06 |
| rat | chromosome:14:49183907:49184026:-1 | intergenic |
block961376 [novel_Multihit_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.62/0.62 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 2 | 3arm | 34 | nd | 0.29 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------CAGAGAG---------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| --------------------------------GCAGAGAGCAGGACATTCCCC--- | 21 | 1 | |
| rat | cagaggacaacctactttcctgctgtctctcaGCAGAGAGCAGGACATTCCCCtgc | ||
| ******************************************************** | |||
| rat | (((.(((...(((.((((.((((((.....)))))))))).)))....))).))). | 0.990 -21.20 |
| rat | chromosome:1:50788754:50788809:1 | intergenic |
block2253202 [novel_Multihit_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.73/0.75 | 22/24/1.00 | 0.0 | 1.0 | 2 | 0 | 2 | 0 | 2 | 33 | 5arm | 59 | nd | 0.29 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---CCCAGAG-------------------------------------------------------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| --GCCCAGAGCCCAGAGCCCAGAG------------------------------------------------------------------------------------------------ | 22 | - | 1 | |
| --GCCCAGAGCCCAGAGCCCAGAGCC---------------------------------------------------------------------------------------------- | 24 | 1 | - | |
| rat | gaGCCCAGAGCCCAGAGCCCAGAGCCcctcctagacgtggtgccagcatttcctcttccctttggttggggagacatcctggagccagtgctcagggtctctgggtccataggcttggct | |||
| ************************************************************************************************************************ | ||||
| rat | .((((..(((((....((((((((.((((...((((.((((.((((..(((((((..((....))..)))))))....)))).)))))).)).)))).)))))))).....))))))))) | 1.000 -54.80 | ||
| rat | chromosome:7:118283335:118283454:1 | intergenic ## {Repeats: trf 2 32 0 class=trf} |
block353462 [novel_Multihit_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 39 | 5arm | 25 | nd | 0.19 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --CUCCUUU--------------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -GCTCCTTTTGCAGAATAGACT-------------------------------------------------------------------------------------------------- | 21 | 1 | |
| rat | tGCTCCTTTTGCAGAATAGACTtatagcctgtggcttgccttggagatatagtagacaagcagttagtgatggtaacaatcttttcgagaggagtggaagtaggtctgttttgttggagt | ||
| ************************************************************************************************************************ | |||
| rat | .(((((....(((((((((((((((..((....((((..((((((((.((.((...((.((.....))..))...)).)).))))))))..))))))..))))))))))))))).))))) | 0.560 -38.90 |
| rat | chromosome:14:49044174:49044293:-1 | intergenic |
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