other hairpins
novel_Multihit_shortStem_randfoldOK_bulgeHIGH (5 loci)
block1286237 [novel_Multihit_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 4 | 26 | 5arm | 157 | nd | 0.25 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------CUCUGAC------------------------------------------------ | 1 | novel |
| seed | -----CUCUGAC---------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| --------------------------------------------------------------GCTCTGACTCTATCCCTAGC------------------------------------ | 20 | 1 | |
| ----GCTCTGACTCTATCCCTAGC---------------------------------------------------------------------------------------------- | 20 | 1 | |
| rat | caggGCTCTGACTCTATCCCTAGCacgtgcagggcagtgactctatccctagcacatacaggGCTCTGACTCTATCCCTAGCacgtgcaaggctatgactctacgtgcagagctctga | ||
| ********************************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000017711 ENSRNOG00000012734 NP_001101138.1 | ||
| rat | ((((((((((((((....(((.((((((((((((....((.((...((((.........))))....)).))...)))).)))))))).)))....))......)).)))))))))). | 0.500 -48.50 |
| rat | chromosome:2:122362256:122362373:1 | Opposite_strand|Intronic_coding|ENSRNOT00000017711|ENSRNOG00000012734 ## ENSRNOG00000012734|protein_coding|NP_001101138.1|DCN1, defective in cullin neddylation 1, domain containing 1 [Source:RefSeq_peptide;Acc:NP_001101138] ## {Repeats: trf 100 120 0 class=trf,trf 5323 5343 0 class=trf} |
novel_cloningHIGH_shortStem (5 loci)
block40596 [novel_cloningHIGH_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.50/0.53 | 19/20/0.99 | 0.0 | 0.0 | 52 | 0 | 9 | 0 | 3 | 21 | 3arm | 1 | nd | 0.10 | 1 | 68 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------------------------------------------------------------------GGCAGUG--------------- | 68 | miR-34a/34c/449a | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------------------TGGCAGTGTCTTAGCGTTGT--- | 20 | 22 | 19 | 1 | 3 | 5 | 2 | 11 | 2 | 2 | |
| -----------------------------------------------------------------------------------TGGCAGTGTCTTAGCGTTG---- | 19 | - | - | - | 1 | - | - | - | - | - | |
| rat | gacacgaaaaagttcaggattacactagtccagtgccattgcagatggagcccccccctgcactccctctgccgatgcccaacTGGCAGTGTCTTAGCGTTGTgtc | ||||||||||
| ********************************************************************************************************** | |||||||||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000047467 ENSRNOG00000031298 RGD1563281_predicted | ||||||||||
| rat | (((((((....(((.((((...((((...(((((..(((((((((.((((............)))).))))).))))....))))).))))))))))).))))))) | 1.000 -35.10 | |||||||||
| rat | chromosome:10:87270840:87270945:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000047467|ENSRNOG00000031298 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000039892|ENSRNOG00000031298 ## ENSRNOG00000031298|protein_coding|RGD1563281_predicted| |
block959265 [novel_cloningHIGH_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.026 | no | no | 0.32/0.42 | 18/24/0.94 | 1.0 0.0 | 0.6 0.0 | 48 1 | 0 0 | 6 1 | 0 0 | 2 15 | 27 13 | 5arm 5arm | 3 4 | nd nd | 0.45 0.29 | 4 3 | 69 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---UCUGAGG--------------------------------------------------------------------------------------------------------- | 35 | novel | |||||
| seed | ------GAGGAUG------------------------------------------------------------------------------------------------------ | 15 | novel | |||||
| seed | ----CUGAGGA-------------------------------------------------------------------------------------------------------- | 12 | novel | |||||
| seed | -----UGAGGAU------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | --CUCUGAG---------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ----------------AUUGAGU-------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------GGAUGAU---------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------GAUGAUU--------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T5S1 | |||
| --CTCTGAGGATGATTATTGAGTGA------------------------------------------------------------------------------------------ | 23 | 1 | 2 | - | - | - | 19 | |
| -----TGAGGATGATTATTGAGTGA------------------------------------------------------------------------------------------ | 20 | 2 | - | - | - | - | 13 | |
| --CTCTGAGGATGATTATTGAG--------------------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | 9 | |
| ---TCTGAGGATGATTATTGAGTGA------------------------------------------------------------------------------------------ | 22 | - | - | - | 1 | - | 7 | |
| ---TCTGAGGATGATTATTGAG--------------------------------------------------------------------------------------------- | 19 | - | 1 | 1 | - | - | - | |
| ----CTGAGGATGATTATTGAG--------------------------------------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| -TCTCTGAGGATGATTATTGAGTGA------------------------------------------------------------------------------------------ | 24 | - | - | - | - | - | 1 | |
| ---TCTGAGGATGATTATTGAGT-------------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| --CTCTGAGGATGATTATTGAGT-------------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| ---TCTGAGGATGATTATTGAGTG------------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| -------AGGATGATTATTGAGTGAA----------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -TCTCTGAGGATGATTATTGAG--------------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| --CTCTGAGGATGATTATTGAGTG------------------------------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | |
| --------GGATGATTATTGAGTGAATTCA------------------------------------------------------------------------------------- | 22 | - | - | - | - | - | 1 | |
| ---------------TATTGAGTGAATTCAGGCGACACT---------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| ----CTGAGGATGATTATTGAGTGA------------------------------------------------------------------------------------------ | 21 | - | - | - | - | - | 1 | |
| --CTCTGAGGATGATTATTGAGTGAA----------------------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| rat | ctCTCTGAGGATGATTATTGAGTGAattcaggcgacactgctggcgtggatgtatgtttgtccagtgtgggtgtaatctggtgtggcctgaagaaacaaaaggcagccccagtga | |||||||
| ******************************************************************************************************************* | ||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||||||
| rat | .((.(((.((.((....((..((...(((((((.((((((((.(((((((((......)))))).))).))).......))))).)))))))...))..))..)).)).))).)) | 1.000 -39.21 | ||||||
| rat | chromosome:1:47865604:47865718:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
block97427 [novel_cloningHIGH_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.617 | no | no | 0.42/0.48 | 19/25/0.96 | 0.0 | 0.0 | 44 | 0 | 3 | 0 | 3 | 26 | 3arm | 1 | nd | 0.26 | 2 | 54 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------------------------------UGCAAAG------------------ | 52 | novel | ||
| seed | --------------------------------------------------------------------------------------------GAUUGCA--------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------------------GCAAAGU----------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------------------------------------------------------------------------------TTGCAAAGTGGCAAGGAAACCTT--- | 23 | 2 | 1 | 44 | |
| ----------------------------------------------------------------------------------------------TTGCAAAGTGGCAAGGAAAC------ | 20 | 1 | - | 1 | |
| -------------------------------------------------------------------------------------------GGATTGCAAAGTGGCAAGGAAACCT---- | 25 | - | - | 1 | |
| ----------------------------------------------------------------------------------------------TTGCAAAGTGGCAAGGAAACCT---- | 22 | - | - | 1 | |
| ----------------------------------------------------------------------------------------------TTGCAAAGTGGCAAGGAAACC----- | 21 | - | - | 1 | |
| ----------------------------------------------------------------------------------------------TTGCAAAGTGGCAAGGAAA------- | 19 | - | - | 1 | |
| -----------------------------------------------------------------------------------------------TGCAAAGTGGCAAGGAAACCTT--- | 22 | - | - | 1 | |
| rat | gatgacgtgggtcctagatgtgttgctggagcatgctgctgggtgtttccagactctttttgcatcttgtttaaagaattcaggcacacacggaTTGCAAAGTGGCAAGGAAACCTTatt | ||||
| ************************************************************************************************************************ | |||||
| rat | (((((.((...((((.....(((..((...(((..(((.((.((((((...((.(((((..((.....))..))))).)).)))))).)))))..)))..))..))))))).)).))))) | 0.440 -29.80 | |||
| rat | chromosome:10:92626098:92626217:1 | intergenic |
block233491 [novel_cloningHIGH_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.541 | no | no | 0.56/0.59 | 18/24/0.86 | 0.0 | 0.0 | 71 | 0 | 7 | 0 | 3 | 21 | 3arm | 2 | nd | 0.26 | 3 | 113 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ------------------------------------------------------------------------------CACACAG------------------ | 85 | novel | ||||||
| seed | ----------------------------------------------------------------------------------CAGGUCU-------------- | 13 | novel | ||||||
| seed | -----------------------------------------------------------------------------UCACACA------------------- | 6 | miR-377 | ||||||
| seed | -------------------------------------------------------------------------------ACACAGG----------------- | 5 | novel | ||||||
| seed | ---------------------------------------------------------------------GCCCAGA--------------------------- | 3 | novel | ||||||
| seed | ---------------------------------------------------------------------------AGUCACA--------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------------TCACACAGGTCTCGTGGACCAGA--- | 23 | 2 | 5 | 1 | 1 | 1 | 71 | 1 | |
| ---------------------------------------------------------------------------------ACAGGTCTCGTGGACCAGA--- | 19 | - | - | - | - | - | 13 | - | |
| ----------------------------------------------------------------------------GTCACACAGGTCTCGTGGACCAGA--- | 24 | - | - | - | - | - | 5 | - | |
| ------------------------------------------------------------------------------CACACAGGTCTCGTGGACCAGA--- | 22 | - | - | - | - | - | 5 | - | |
| --------------------------------------------------------------------TGCCCAGAGTCACACAGGTCTC------------- | 22 | - | - | 1 | - | - | 2 | - | |
| -----------------------------------------------------------------------------TCACACAGGTCTCGTGGACCAG---- | 22 | - | - | - | - | - | 1 | 1 | |
| -----------------------------------------------------------------------------TCACACAGGTCTCGTGGA-------- | 18 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------GTCACACAGGTCTCGTGGA-------- | 19 | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------GAGTCACACAGGTCTCGTG---------- | 19 | - | - | - | 1 | - | - | - | |
| rat | ctgtggtccccccacatcagccctgtgtagcgagtggaactctgtatttgaccttccatgaagagccttgcccagagTCACACAGGTCTCGTGGACCAGAtag | ||||||||
| ******************************************************************************************************* | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||||||
| rat | ...((((((......((.((.(((((((.((....((..((((.....((......))...)))).....))....)).))))))).)).))))))))..... | 0.490 -26.50 | |||||||
| rat | chromosome:12:43044036:43044138:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
block1696341 [novel_cloningHIGH_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.030 | no | no | 0.47/0.55 | 18/25/0.77 | 0.0 | 0.0 | 67 | 0 | 7 | 0 | 3 | 1 | 3arm | 1 | nd | 0.25 | 3 | 117 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ------------------------------GGGAAAA--------------- | 88 | novel | ||||||
| seed | -------------------------CCACUGG-------------------- | 23 | novel | ||||||
| seed | -------------------------------GGAAAAC-------------- | 4 | novel | ||||||
| seed | ----------------------------CUGGGAA----------------- | 1 | miR-204* | ||||||
| seed | -----------------------CUCCACU---------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------TGGGAAAACCATCAGCAGAG--- | 20 | 2 | 3 | 2 | - | 4 | 67 | - | |
| ------------------------TCCACTGGGAAAACCATCAGCAGAG--- | 25 | 1 | - | - | - | - | 16 | - | |
| -----------------------------TGGGAAAACCATCAGCAG----- | 18 | 1 | - | - | - | - | 3 | - | |
| ------------------------TCCACTGGGAAAACCATCAG-------- | 20 | 2 | 1 | - | - | - | 1 | - | |
| ------------------------------GGGAAAACCATCAGCAGAG--- | 19 | - | - | - | - | - | 3 | 1 | |
| -----------------------------TGGGAAAACCATCAGCAGAGCC- | 22 | - | - | - | 1 | - | 1 | - | |
| -----------------------------TGGGAAAACCATCAGCAGAGC-- | 21 | - | - | - | - | - | 2 | - | |
| -----------------------------TGGGAAAACCATCAGCAGAGCCT | 23 | - | - | - | - | - | 1 | - | |
| -----------------------------TGGGAAAACCATCAGCAGA---- | 19 | - | - | - | - | - | 1 | - | |
| ------------------------TCCACTGGGAAAACCATCA--------- | 19 | - | - | - | - | - | 1 | - | |
| ---------------------------ACTGGGAAAACCATCAGCAGAG--- | 22 | 1 | - | - | - | - | - | - | |
| ----------------------GCTCCACTGGGAAAACCATCAG-------- | 22 | - | - | - | - | - | 1 | - | |
| ------------------------TCCACTGGGAAAACCATCAGCAG----- | 23 | - | - | - | - | 1 | - | - | |
| rat | gggcatttctctcgtggttccagctccacTGGGAAAACCATCAGCAGAGcct | ||||||||
| **************************************************** | |||||||||
| rat | ((((...(((((.((((((((((.....)))))...))))).)).))))))) | 1.000 -17.40 | |||||||
| rat | chromosome:4:164268014:164268065:1 | intergenic |
novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH (5 loci)
block959316 [novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.40/0.44 | 18/24/0.80 | 0.0 1.5 | 0.0 0.5 | 6 2 | 0 0 | 3 2 | 0 0 | 16 7 | -6 1 | 3arm_loop 3arm | 3 3 | nd nd | 0.45 0.39 | 5 3 | 10 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------AACCACU---------------------------- | 6 | novel | |||
| seed | -------------------------------------GAUACCA--------------------- | 1 | novel | |||
| seed | --------------------------GCAUAAC-------------------------------- | 1 | novel | |||
| seed | -------------------------------ACCACUG--------------------------- | 1 | novel | |||
| seed | ----------------------------------------ACCAGAA------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T4S1 | T5S1 | |||
| -----------------------------TAACCACTGATACCAGAACA---------------- | 20 | - | - | - | 6 | |
| -------------------------AGCATAACCACTGATACCAGAACA---------------- | 24 | 1 | - | - | - | |
| ------------------------------------TGATACCAGAACATAGCAGGAA------- | 22 | - | 1 | - | - | |
| ------------------------------AACCACTGATACCAGAACA---------------- | 19 | - | - | 1 | - | |
| ---------------------------------------TACCAGAACATAGCAGGA-------- | 18 | - | - | 1 | - | |
| rat | tgcatagagctagccatgtgggttcagcaTAACCACTGATACCAGAACAtagcaggaatttgcat | |||||
| ***************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||||
| rat | ((((.....((.((.((((.(((((((........)))).)))...)))).)).))....)))). | 1.000 -18.10 | ||||
| rat | chromosome:1:47867570:47867634:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
block959344 [novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.40/0.44 | 18/24/0.80 | 0.0 1.5 | 0.0 0.5 | 6 2 | 0 0 | 3 2 | 0 0 | 16 7 | -6 1 | 3arm_loop 3arm | 3 3 | nd nd | 0.45 0.39 | 5 3 | 10 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------AACCACU---------------------------- | 6 | novel | |||
| seed | -------------------------------------GAUACCA--------------------- | 1 | novel | |||
| seed | --------------------------GCAUAAC-------------------------------- | 1 | novel | |||
| seed | -------------------------------ACCACUG--------------------------- | 1 | novel | |||
| seed | ----------------------------------------ACCAGAA------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T4S1 | T5S1 | |||
| -----------------------------TAACCACTGATACCAGAACA---------------- | 20 | - | - | - | 6 | |
| -------------------------AGCATAACCACTGATACCAGAACA---------------- | 24 | 1 | - | - | - | |
| ------------------------------------TGATACCAGAACATAGCAGGAA------- | 22 | - | 1 | - | - | |
| ------------------------------AACCACTGATACCAGAACA---------------- | 19 | - | - | 1 | - | |
| ---------------------------------------TACCAGAACATAGCAGGA-------- | 18 | - | - | 1 | - | |
| rat | tgcatagagctagccatgtgggttcagcaTAACCACTGATACCAGAACAtagcaggaatttgcat | |||||
| ***************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||||
| rat | ((((.....((.((.((((.(((((((........)))).)))...)))).)).))....)))). | 1.000 -18.10 | ||||
| rat | chromosome:1:47869107:47869171:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
block959717 [novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.40/0.44 | 18/24/0.80 | 0.0 1.5 | 0.0 0.5 | 6 2 | 0 0 | 3 2 | 0 0 | 16 7 | -6 1 | 3arm_loop 3arm | 3 3 | nd nd | 0.45 0.39 | 5 3 | 10 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------AACCACU---------------------------- | 6 | novel | |||
| seed | -------------------------------------GAUACCA--------------------- | 1 | novel | |||
| seed | --------------------------GCAUAAC-------------------------------- | 1 | novel | |||
| seed | -------------------------------ACCACUG--------------------------- | 1 | novel | |||
| seed | ----------------------------------------ACCAGAA------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T4S1 | T5S1 | |||
| -----------------------------TAACCACTGATACCAGAACA---------------- | 20 | - | - | - | 6 | |
| -------------------------AGCATAACCACTGATACCAGAACA---------------- | 24 | 1 | - | - | - | |
| ------------------------------------TGATACCAGAACATAGCAGGAA------- | 22 | - | 1 | - | - | |
| ------------------------------AACCACTGATACCAGAACA---------------- | 19 | - | - | 1 | - | |
| ---------------------------------------TACCAGAACATAGCAGGA-------- | 18 | - | - | 1 | - | |
| rat | tgcatagagctagccatgtgggttcagcaTAACCACTGATACCAGAACAtagcaggaatttgcat | |||||
| ***************************************************************** | ||||||
| rat | ((((.....((.((.((((.(((((((........)))).)))...)))).)).))....)))). | 1.000 -18.10 | ||||
| rat | chromosome:1:47987244:47987308:1 | intergenic |
block3188615 [novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.402 | no | no | 0.52/0.70 | 19/23/0.82 | 0.5 1.6 | 0.5 1.1 | 4 7 | 0 0 | 2 2 | 0 0 | 19 12 | -11 -4 | 3arm_loop 3arm | 7 7 | nd nd | 0.61 0.40 | 10 3 | 11 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------CAAUUCC---------------------------------- | 3 | novel | ||
| seed | ------------------------------------AUCCUCA--------------------------- | 3 | novel | ||
| seed | --------------------------------------CCUCACC------------------------- | 2 | novel | ||
| seed | -------------------------------AUUCCAU-------------------------------- | 1 | novel | ||
| seed | ----------------------------------------UCACCAC----------------------- | 1 | novel | ||
| seed | ---------------------------------------CUCACCA------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S2 | |||
| -----------------------------------CATCCTCACCACCCACACCAC-------------- | 21 | 3 | - | - | |
| ----------------------------ACAATTCCATCCTCACCACCCAC------------------- | 23 | 3 | - | - | |
| -------------------------------------TCCTCACCACCCACACCACCC------------ | 21 | 2 | - | - | |
| ------------------------------AATTCCATCCTCACCACCC--------------------- | 19 | - | 1 | - | |
| --------------------------------------CCTCACCACCCACACCACCC------------ | 20 | 1 | - | - | |
| ---------------------------------------CTCACCACCCACACCACCC------------ | 19 | - | - | 1 | |
| rat | caggtttccactgctgtagttgagtcctACAATTCCATCCTCACCACCCACACCACCCtggagcactctg | ||||
| ********************************************************************** | |||||
| rat | ((((((((((.((.(((.((((((...............))))..))..))).))...))))).)).))) | 0.780 -9.56 | |||
| rat | chromosome:X:157580553:157580622:1 | intergenic |
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