other hairpins
novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH (5 loci)
block1767094 [novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.250 | no | no | 0.30/0.39 | 18/25/0.77 | 2.2 | 2.5 | 8 | 0 | 3 | 0 | 10 | -8 | 5arm_loop | 1 | nd | 0.35 | 2 | 13 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------AAGCUAA-------------------------------------------------------------- | 9 | novel | ||
| seed | --------------------CAAAAGG----------------------------------------------------- | 4 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| ----------TAAGCTAAATCAAAAGGTGA-------------------------------------------------- | 20 | 1 | - | 6 | |
| -------------------TCAAAAGGTGAAGTCCAAAGT---------------------------------------- | 21 | - | 1 | 2 | |
| ----------TAAGCTAAATCAAAAGGTG--------------------------------------------------- | 19 | - | - | 1 | |
| -------------------TCAAAAGGTGAAGTCCAA------------------------------------------- | 18 | - | - | 1 | |
| ----------TAAGCTAAATCAAAAGGTGAAGTCC--------------------------------------------- | 25 | - | - | 1 | |
| rat | tgtctgggcaTAAGCTAAATCAAAAGGTGAAGTCCAAAGTaaaaccctaaacccttgaatggctccaaatgttgtgacaa | ||||
| ******************************************************************************** | |||||
| rat | ((((..(((((.(((((..((((..(((..((..............))..))).)))).)))))....)))))..)))). | 0.950 -14.04 | |||
| rat | chromosome:5:114558031:114558110:-1 | intergenic |
novel_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH (5 loci)
block1767131 [novel_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.666 | no | no | 0.33/0.55 | 19/26/0.75 | 1.8 0.0 | 1.5 0.0 | 8 1 | 0 0 | 3 1 | 0 0 | 24 19 | 2 13 | 3arm 3arm | 1 1 | nd nd | 0.32 0.40 | 4 4 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------CUUUUCU------------------------------------------ | 6 | novel | ||
| seed | ------------------------------------------------------------UCUGUAG----------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------CUCUUUU-------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------CUUCUGU------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------UAGAACA------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------ACCCUCU----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ----------------------------------------------------TCTTTTCTTCTGTAGAACACT----------------------------- | 21 | - | - | 4 | |
| -----------------------------------------------------------TTCTGTAGAACACTTCCAG------------------------ | 19 | - | - | 2 | |
| ----------------------------------------------------TCTTTTCTTCTGTAGAACAC------------------------------ | 20 | 2 | - | - | |
| ---------------------------------------------------------------GTAGAACACTTCCAGCCCTG------------------- | 20 | - | - | 1 | |
| --------------------------------------------------CCTCTTTTCTTCTGTAGAACACTTCC-------------------------- | 26 | - | - | 1 | |
| ---------------------------------------------------------TCTTCTGTAGAACACTTCCAG------------------------ | 21 | - | - | 1 | |
| -----------------------------------------------TACCCTCTTTTCTTCTGTAGA---------------------------------- | 21 | - | 1 | - | |
| rat | agcagcctaaggcaaagaaaggtctcttggagtttacagcattggcttacccTCTTTTCTTCTGTAGAACACTTCCAGccctgacaaatttgctcccttgtt | ||||
| ****************************************************************************************************** | |||||
| rat | (((((.....((((((.....(((..(((((((((((((....((.....)).........)))))))....))))))....)))...))))))...))))) | 0.720 -17.62 | |||
| rat | chromosome:5:114559479:114559580:-1 | intergenic |
block233523 [novel_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.630 | no | no | 0.50/0.58 | 19/24/0.73 | 1.7 | 1.3 | 6 | 0 | 5 | 0 | 9 | 3 | 3arm | 2 | nd | 0.40 | 4 | 11 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------CCCUUCA------------------------- | 6 | novel | ||||
| seed | -----------------------------------------------------CAGAUCU-------------------- | 3 | novel | ||||
| seed | -----------------------------------------------UCCCUUC-------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------UCAGAUC--------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T3S1 | T4S1 | T4S2 | T5S1 | |||
| -----------------------------------------------TCCCTTCAGATCTCCACTTG------------- | 20 | 1 | 1 | - | - | 4 | |
| ----------------------------------------------------TCAGATCTCCACTTGGCGG--------- | 19 | - | - | - | 1 | 2 | |
| ---------------------------------------------------TTCAGATCTCCACTTGGCGGGGAA----- | 24 | - | - | - | - | 1 | |
| ----------------------------------------------TTCCCTTCAGATCTCCACTTGG------------ | 22 | - | - | 1 | - | - | |
| rat | gaggtggccccgagagagtcctgtcctgggggaaacgtgtgcaggctTCCCTTCAGATCTCCACTTGGCGGggaatgttg | ||||||
| ******************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||||
| rat | ((.((..(((((...((((...(((..(((((((..((......)))))))))..)))....))))..))))).)).)). | 0.910 -23.90 | |||||
| rat | chromosome:12:43045150:43045229:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
block601254 [novel_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.302 | no | no | 0.47/0.52 | 19/23/0.91 | 2.7 | 2.3 | 6 | 0 | 2 | 0 | 20 | 0 | 3arm | 2 | nd | 0.48 | 6 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------CCCAGUG------------------------------------------ | 6 | novel | |
| seed | -------------------------------------------------------AGAUUGU---------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------GUAGAUU------------------------------------ | 2 | miR-376a* | |
| seed | ------------------------------------------------CCAGUGU----------------------------------------- | 1 | miR-199a | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| ----------------------------------------------TCCCAGTGTAGATTGTGTCAGAG--------------------------- | 23 | 4 | 1 | |
| ------------------------------------------------------TAGATTGTGTCAGAGCCCGTGT-------------------- | 22 | 2 | - | |
| ----------------------------------------------------TGTAGATTGTGTCAGAGCCCGT---------------------- | 22 | 1 | - | |
| ----------------------------------------------------TGTAGATTGTGTCAGAGCC------------------------- | 19 | 1 | - | |
| ----------------------------------------------TCCCAGTGTAGATTGTGTCAG----------------------------- | 21 | 1 | - | |
| -----------------------------------------------CCCAGTGTAGATTGTGTCAGAGC-------------------------- | 23 | 1 | - | |
| rat | catgacccatgtggttgtcgagaactgtcaggaattctggggtattTCCCAGTGTAGATTGTGTCAGAGCCCGTGTagtgacctctttgggagtgt | |||
| ************************************************************************************************ | ||||
| rat | (((..((((...((((..((....(((.((.((...((((((....))))))......)).)).)))....))......))))....)))).))). | 0.480 -24.20 | ||
| rat | chromosome:17:17528032:17528127:-1 | intergenic |
block1060865 [novel_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.332 | no | no | 0.50/0.58 | 18/25/0.73 | 5.0 | 4.0 | 14 | 0 | 3 | 0 | 8 | 14 | 5arm | 1 | nd | 0.33 | 4 | 26 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------GGGCGAC------------------------------------------------------------------------------------- | 11 | novel | ||
| seed | -------------------UACACGU--------------------------------------------------------------------------- | 9 | novel | ||
| seed | --------------------ACACGUC-------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----GCUUGGG----------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------CGACACU---------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------CACGUCU------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------UGGGCGA-------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| --------TGGGCGACACTTACACGTCTCTG---------------------------------------------------------------------- | 23 | 1 | - | 7 | |
| ------------------TTACACGTCTCTGGAGCTCAG-------------------------------------------------------------- | 21 | - | - | 7 | |
| --------TGGGCGACACTTACACGT--------------------------------------------------------------------------- | 18 | 1 | - | 1 | |
| -------------------TACACGTCTCTGGAGCTCAG-------------------------------------------------------------- | 20 | - | - | 2 | |
| ----TGCTTGGGCGACACTTACACGTCTC------------------------------------------------------------------------ | 25 | - | - | 1 | |
| -------TTGGGCGACACTTACACG---------------------------------------------------------------------------- | 18 | - | - | 1 | |
| --------------------ACACGTCTCTGGAGCTCAG-------------------------------------------------------------- | 19 | - | - | 1 | |
| ------------------TTACACGTCTCTGGAGCTC---------------------------------------------------------------- | 19 | - | 1 | - | |
| ------------------TTACACGTCTCTGGAGCT----------------------------------------------------------------- | 18 | - | - | 1 | |
| -----------GCGACACTTACACGTCTCTGGAG------------------------------------------------------------------- | 23 | - | - | 1 | |
| --------TGGGCGACACTTACACGTCTC------------------------------------------------------------------------ | 21 | - | - | 1 | |
| rat | tctctgctTGGGCGACACTTACACGTCTCTGGAGCTCAGctttgaactctggcagaaaggcaaagaagggagggcagcaactggagatggctcttcagaga | ||||
| ***************************************************************************************************** | |||||
| rat | ((((((...((((..........(((((((((.(((..(((((...((((.((......)).....))))))))))))..)))))))))))))..)))))) | 0.950 -29.90 | |||
| rat | chromosome:20:5519410:5519510:-1 | intergenic |
block1848471 [novel_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.229 | no | no | 0.50/0.67 | 18/24/0.70 | 0.3 3.6 | 0.3 4.9 | 6 14 | 0 0 | 3 5 | 0 0 | 27 8 | 4 12 | 3arm 3arm | 1 1 | nd nd | 0.39 0.58 | 4 8 | 20 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------------------GACAGCU------------------------------- | 6 | novel | |||||
| seed | ---------------------------------------------------------------------------CCCUAAA------------------------ | 5 | novel | |||||
| seed | ------------------------------------------------------------AGCCAGG--------------------------------------- | 4 | novel | |||||
| seed | -------------------------------------------------------------GCCAGGU-------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------------------------------------------------AAACCAC-------------------- | 2 | novel | |||||
| seed | --------------------------------------------------------------------------UCCCUAA------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------TCCCTAAACCACACCCACCCTCTG-------- | 24 | - | - | - | - | 3 | - | |
| -----------------------------------------------------------CAGCCAGGTGACAGCTCCCT--------------------------- | 20 | - | - | - | 1 | 2 | - | |
| ------------------------------------------------------------AGCCAGGTGACAGCTCCCT--------------------------- | 19 | - | 1 | - | - | 1 | - | |
| -------------------------------------------------------------------TGACAGCTCCCTAAACCACAC------------------ | 21 | - | - | - | - | 2 | - | |
| -------------------------------------------------------------------TGACAGCTCCCTAAACCACACCCA--------------- | 24 | - | - | - | - | 2 | - | |
| ------------------------------------------------------------------------------TAAACCACACCCACCCTC---------- | 18 | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------TGACAGCTCCCTAAACCACA------------------- | 20 | - | - | 1 | - | - | - | |
| --------------------------------------------------------------------------TCCCTAAACCACACCCACCCT----------- | 21 | 1 | - | - | - | - | - | |
| -------------------------------------------------------------------TGACAGCTCCCTAAACCAC-------------------- | 19 | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------CTCCCTAAACCACACCCACCCTC---------- | 23 | - | 1 | - | - | - | - | |
| -----------------------------------------------------------CAGCCAGGTGACAGCTCC----------------------------- | 18 | - | - | - | 1 | - | - | |
| --------------------------------------------------------------------------TCCCTAAACCACACCCACCCTC---------- | 22 | - | 1 | - | - | - | - | |
| rat | gaagagacacgcccaccagagccaagagagagagccattacactctgtccttgaagggaCAGCCAGGTGACAGCTCCCTAAACCACACCCACCCTCTGcctccttc | |||||||
| ********************************************************************************************************** | ||||||||
| rat | ..................(((...((((((.((((..((((...(((((((....)))))))....))))..)))).))..............))))..))).... | 0.440 -24.53 | ||||||
| rat | chromosome:5:79245160:79245265:1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH (5 loci)
block1848472 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.489 | no | no | 0.45/0.62 | 18/24/0.70 | 0.0 0.0 0.0 2.3 | 0.0 0.0 0.0 1.3 | 9 1 4 3 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 25 37 32 20 | 4 -10 -7 0 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.25 0.55 0.63 0.37 | 4 8 6 4 | 20 | 2 | 0 | -11 |
| reads | miRBase family seed | |||
| seed | --------------------------GCCUCCU-------------------------------------------------------------------- | 11 | novel | |
| seed | ---------------------------------------------------CUGACUG------------------------------------------- | 4 | novel | |
| seed | ----------------------------------------------------------AAGCUGU------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------GUGUGCG------------------------------- | 1 | novel | |
| seed | ------------------------------------------------UGUCUGA---------------------------------------------- | 1 | novel | |
| seed | --------------------------------------CAAGGUG-------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------GCUGUGU---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------TGCCTCCTTCACTCAAGGTG-------------------------------------------------------- | 20 | 9 | 1 | |
| --------------------------------------------------TCTGACTGAAGCTGTGTGC-------------------------------- | 19 | 4 | - | |
| -----------------------------------------------------------AGCTGTGTGCGCAGTGAAG----------------------- | 19 | 1 | - | |
| -------------------------TGCCTCCTTCACTCAAGGTGCTTT---------------------------------------------------- | 24 | 1 | - | |
| --------------------------------------------------------------TGTGTGCGCAGTGAAGGC--------------------- | 18 | 1 | - | |
| -----------------------------------------------TTGTCTGACTGAAGCTGTGTG--------------------------------- | 21 | 1 | - | |
| ---------------------------------------------------------GAAGCTGTGTGCGCAGTGAAGGCC-------------------- | 24 | 1 | - | |
| -------------------------------------TCAAGGTGCTTTGTCTGACTGA------------------------------------------ | 22 | 1 | - | |
| rat | agctccctaaaccacacccaccctcTGCCTCCTTCACTCAAGGTGctttgTCTGACTGAAGCTGTGTGCgcagtgaaggccggccgatgctttaggtccgc | |||
| ***************************************************************************************************** | ||||
| rat | .((..((((((.((.........((.(((.((((((((((....(((((........)))))....))...))))))))..))).)))).))))))...)) | 0.940 -26.60 | ||
| rat | chromosome:5:79245231:79245331:1 | intergenic |
sblock10114 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.753 | no | no | 0.45/0.55 | 19/23/0.77 | 0.0 0.0 6.1 0.0 3.3 | 0.0 0.0 4.9 0.0 0.7 | 1 1 7 1 3 | 0 0 0 0 0 | 1 1 3 1 1 | 0 0 0 0 0 | 4 18 32 17 0 | 22 9 -22 11 25 | 5arm 5arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.38 0.25 0.29 0.50 0.39 | 6 4 3 8 3 | 13 | 3 | -10 | -6 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------AGGUCUG--------------------------------------------------------- | 3 | novel | ||
| seed | ------------------------------------ACCAUAG-------------------------------------------------------------- | 2 | novel | ||
| seed | -----AAGGACG--------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------------------GUGCCCU------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------GCCCUUG----------- | 1 | novel | ||
| seed | -----------------------------------------------------GAAGACA--------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------ACAUGUG----------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------CAGAGUG------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------GACCAGG--------------------------------------------------- | 1 | novel | ||
| seed | -------------------GCCCUGC------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| -----------------------------------TACCATAGGTCTGACCAGGAAGA----------------------------------------------- | 23 | - | 1 | 1 | |
| --------------------------------------------------------------------------------TACATGTGCCCTTGTTGTGAGAG-- | 23 | - | - | 1 | |
| ----------------------------------------TAGGTCTGACCAGGAAGACAGT------------------------------------------- | 22 | - | - | 1 | |
| ----------------------------------------TAGGTCTGACCAGGAAGACAG-------------------------------------------- | 21 | - | - | 1 | |
| ----------------------------------------------------GGAAGACAGTGTGGACAGAGT-------------------------------- | 21 | - | - | 1 | |
| --------------------------------------------------------------------------------------TGCCCTTGTTGTGAGAGGA | 19 | - | - | 1 | |
| ----------------------------------------------TGACCAGGAAGACAGTGTGGACA------------------------------------ | 23 | 1 | - | - | |
| ----TAAGGACGGAGAAATGCCCTG-------------------------------------------------------------------------------- | 21 | - | - | 1 | |
| ----------------------------------------TAGGTCTGACCAGGAAGAC---------------------------------------------- | 19 | - | - | 1 | |
| ------------------TGCCCTGCTCAGAAGTCTAC------------------------------------------------------------------- | 20 | - | - | 1 | |
| ------------------------------------------------------------------------------------TGTGCCCTTGTTGTGAGAG-- | 19 | - | - | 1 | |
| ------------------------------------------------------------------ACAGAGTGGTTGGTTACATGTG----------------- | 22 | - | - | 1 | |
| rat | ccctTAAGGACGGAGAAATGCCCTGCTCAGAAGTCTACCATAGGTCTGACCAGGAAGACAGTGTGGACAGAGTGGTTGGTTACATGTGCCCTTGTTGTGAGAGGA | ||||
| ********************************************************************************************************* | |||||
| rat | ((((((..(((((......(((((((((....((((((.....((((........))))...)))))).))))))..)))........))...))).)))).)). | 0.420 -25.54 | |||
| rat | chromosome:6:122567608:122567712:-1 | intergenic |
sblock6774 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.355 | no | no | 0.37/0.59 | 19/24/0.85 | 0.4 2.6 0.0 0.0 | 1.6 2.1 0.0 0.5 | 9 7 1 2 | 0 0 0 0 | 4 2 1 1 | 0 0 0 0 | 24 12 8 0 | -13 7 16 22 | 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.55 0.25 0.42 0.55 | 10 5 5 5 | 26 | 5 | 0 | 19 |
| reads | miRBase family seed | ||||||
| seed | -------------------------CUGGCAU------------------------------------------------------------ | 10 | novel | ||||
| seed | ---------------------------GGCAUGA---------------------------------------------------------- | 4 | novel | ||||
| seed | ---------------------------------------------------------UGGGACU---------------------------- | 3 | novel | ||||
| seed | ----------------------------------------------------------GGGACUC--------------------------- | 2 | novel | ||||
| seed | ------------------------------------------------------------------------GGUUGAC------------- | 2 | novel | ||||
| seed | -------------------------------------------------------------ACUCUUU------------------------ | 2 | novel | ||||
| seed | --------------------------------GAGUAGA----------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------UUCUUUG------------------- | 1 | novel | ||||
| seed | --------------------------UGGCAUG----------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T5S1 | |||
| ------------------------CCTGGCATGAGTAGACCCAA------------------------------------------------ | 20 | - | - | - | - | 5 | |
| ------------------------CCTGGCATGAGTAGACCCAAGCAG-------------------------------------------- | 24 | - | 1 | - | - | 2 | |
| ------------------------------------------------------------GACTCTTTCTTTGGTTGACT------------ | 20 | - | - | - | - | 2 | |
| --------------------------TGGCATGAGTAGACCCAAGCA--------------------------------------------- | 21 | - | - | - | - | 2 | |
| ------------------------CCTGGCATGAGTAGACCCAAGC---------------------------------------------- | 22 | - | - | - | - | 1 | |
| --------------------------------------------------------TTGGGACTCTTTCTTTGGTTG--------------- | 21 | - | - | - | - | 1 | |
| --------------------------------------------------------TTGGGACTCTTTCTTTGGT----------------- | 19 | - | - | - | - | 1 | |
| -------------------------CTGGCATGAGTAGACCCAAGC---------------------------------------------- | 21 | - | - | - | 1 | - | |
| -----------------------------------------------------------------------TGGTTGACTTGAGGGATGTCC | 21 | - | - | - | - | 1 | |
| -----------------------------------------------------------------------TGGTTGACTTGAGGGATGTC- | 20 | - | - | - | - | 1 | |
| --------------------------TGGCATGAGTAGACCCAAGCAGC------------------------------------------- | 23 | - | - | 1 | - | - | |
| -------------------------------TGAGTAGACCCAAGCAGCCT----------------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------------------------------------------TTGGGACTCTTTCTTTGGTTGACT------------ | 24 | - | - | - | - | 1 | |
| -----------------------------------------------------------------TTTCTTTGGTTGACTTGAG-------- | 19 | 1 | - | - | - | - | |
| --------------------------TGGCATGAGTAGACCCAAGCAG-------------------------------------------- | 22 | - | - | - | - | 1 | |
| ---------------------------------------------------------TGGGACTCTTTCTTTGGTT---------------- | 19 | - | - | 1 | - | - | |
| ------------------------CCTGGCATGAGTAGACCCA------------------------------------------------- | 19 | - | - | - | - | 1 | |
| ---------------------------------------------------------TGGGACTCTTTCTTTGGTTG--------------- | 20 | - | - | - | - | 1 | |
| rat | acatatgagtacagagggaggggtCCTGGCATGAGTAGACCCAAGCAGcctcagtcttggGACTCTTTCTTTGGTTGACTtgagggatgtcc | ||||||
| ******************************************************************************************** | |||||||
| rat | ((((.(((((...(((((((((((((((((.((((..............)))))))..)))))))))))))).....)))))....)))).. | 0.790 -27.04 | |||||
| rat | chromosome:20:5527331:5527422:-1 | intergenic |
sblock779 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.152 | no | no | 0.32/0.48 | 18/24/0.73 | 0.0 0.0 1.3 0.9 0.0 | 1.2 0.0 1.3 1.1 0.0 | 5 7 3 8 1 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 3 24 35 29 6 | 25 3 -12 -20 15 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.36 0.30 0.52 0.32 0.26 | 4 3 8 3 4 | 30 | 4 | 0 | -10 |
| reads | miRBase family seed | |||||
| seed | -------------------------GGGAAGA---------------------------------------------------------------------- | 12 | novel | |||
| seed | ------------------------------------------------AAGCAGG----------------------------------------------- | 7 | novel | |||
| seed | ----GGACUUU------------------------------------------------------------------------------------------- | 5 | novel | |||
| seed | -------------------------------------GGAGACU---------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------GGAAGAU--------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------------GGUUCCA--------------------- | 1 | novel | |||
| seed | ------------------------------------UGGAGAC----------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------GAAUUAA---------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------AGACUUC-------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ------------------------TGGGAAGATATTTGGAGACTTCA------------------------------------------------------- | 23 | - | - | 7 | 1 | |
| -----------------------------------------------TAAGCAGGGAATTAATGGGTAC--------------------------------- | 22 | - | 2 | 2 | - | |
| -----------------------------------------------TAAGCAGGGAATTAATGGGTACT-------------------------------- | 23 | - | - | 2 | - | |
| ------------------------TGGGAAGATATTTGGAGAC----------------------------------------------------------- | 19 | - | - | 2 | - | |
| ---TGGACTTTAATCTGTGGGC-------------------------------------------------------------------------------- | 19 | - | - | 2 | - | |
| ------------------------TGGGAAGATATTTGGAGACT---------------------------------------------------------- | 20 | - | - | 2 | - | |
| ---TGGACTTTAATCTGTGGG--------------------------------------------------------------------------------- | 18 | - | - | 2 | - | |
| ------------------------------------------------------GGAATTAATGGGTACTAAA----------------------------- | 19 | - | - | 1 | - | |
| --------------------------------------GAGACTTCATAAGCAGGGAATTAA---------------------------------------- | 24 | - | - | 1 | - | |
| -------------------------------------------------------------------------TGGTTCCAGGGAAGAATGGATTG------ | 23 | 1 | - | - | - | |
| -------------------------GGGAAGATATTTGGAGACTTCA------------------------------------------------------- | 22 | - | - | 1 | - | |
| -----------------------------------TTGGAGACTTCATAAGCAGGGAA-------------------------------------------- | 23 | - | - | 1 | - | |
| ---TGGACTTTAATCTGTGGGCCAT----------------------------------------------------------------------------- | 22 | - | - | 1 | - | |
| -----------------------------------------------TAAGCAGGGAATTAATGGG------------------------------------ | 19 | - | - | 1 | - | |
| ------------------------------------TGGAGACTTCATAAGCAGGGAA-------------------------------------------- | 22 | - | - | 1 | - | |
| rat | gtttggactttaatctgtgggccaTGGGAAGATATTTGGAGACTTCAtaagcagggaattaatgggtactaaatggttccagggaagaatggattgccaggc | |||||
| ****************************************************************************************************** | ||||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | |||||
| rat | ((((((....((((((((...((.(((((...(((((((..((((..(((........)))..)))).))))))).))))).))....)))))))))))))) | 1.000 -24.80 | ||||
| rat | chromosome:1:129026319:129026420:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
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