other hairpins
novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH (5 loci)
sblock8469 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.292 | no | no | 0.40/0.58 | 19/22/0.91 | 0.0 0.0 2.5 0.0 | 0.0 0.5 1.0 0.0 | 4 2 2 2 | 0 0 0 0 | 2 2 2 1 | 0 0 0 0 | 11 29 41 0 | 14 -4 -17 38 | 5arm 5arm_loop 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.48 0.25 0.55 0.58 | 4 4 9 10 | 11 | 2 | 0 | -14 |
| reads | miRBase family seed | |||
| seed | ------------CAUCGAC---------------------------------------------------------------------------------------------- | 5 | novel | |
| seed | ------------------------------GUAGCUU---------------------------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------------------------------GAUUGGU------------ | 2 | novel | |
| seed | -----------------------------------------------UGUAUCC----------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------GCAUGUG---------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------TCATCGACAGTTCTACTCTGT--------------------------------------------------------------------------------- | 21 | 1 | 4 | |
| ---------------------------------------------------------------------------------------------TGATTGGTAGTCTTTGGTGA | 20 | - | 2 | |
| -----------------------------------------GGCATGTGTATCCTGTGTCCCA-------------------------------------------------- | 22 | - | 1 | |
| -----------------------------TGTAGCTTTGCTGGCATGTGT--------------------------------------------------------------- | 21 | 1 | - | |
| -----------------------------TGTAGCTTTGCTGGCATGTG---------------------------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------------GTGTATCCTGTGTCCCAGG------------------------------------------------ | 19 | 1 | - | |
| rat | ctggcaatctaTCATCGACAGTTCTACTCTGTagctttgctggcatgtgtatcctgtgtcccaggcaaggctgacagtaaatgttgcacctgcTGATTGGTAGTCTTTGGTGA | |||
| ***************************************************************************************************************** | ||||
| rat | (((.(((((......(((((....((((...(((((((((((((((.........)))))...))))))))))..))))..)))))........))))).))).......... | 0.540 -30.54 | ||
| rat | chromosome:4:116143528:116143640:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH (5 loci)
sblock10870 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.089 | no | no | 0.42/0.56 | 18/26/0.76 | 1.2 0.0 0.0 0.0 0.3 | 0.3 0.0 0.5 0.0 1.3 | 10 1 2 1 3 | 0 0 0 0 0 | 2 1 2 1 1 | 0 0 0 0 0 | 16 31 18 10 2 | 15 1 19 25 33 | 5arm 5arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.35 0.48 0.32 0.38 0.38 | 6 7 2 4 5 | 21 | 3 | 0 | 3 |
| reads | miRBase family seed | ||||
| seed | --------------------AGAGCCA------------------------------------------------------------------------------------------ | 6 | novel | ||
| seed | ------------------AGAGAGC-------------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | --------------GUUCAGA------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------------------GACAAUA--------------- | 2 | novel | ||
| seed | -----------------CAGAGAG--------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------------GGGUUUG----------------------------- | 2 | novel | ||
| seed | --------------------------------ACAGGGU------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------------------ACAAUAG-------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------GGCUACC----------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------------GAGAGCCACTTAGACAGGGT------------------------------------------------------------------------------ | 20 | - | - | 5 | |
| -----------------CAGAGAGCCACTTAGACAGGGTA----------------------------------------------------------------------------- | 23 | - | 3 | - | |
| ----------------TCAGAGAGCCACTTAGACAGGGT------------------------------------------------------------------------------ | 23 | - | - | 2 | |
| --------------------------------------------------------------------------------------TGGCTACCTGACAATAGGAGA---------- | 21 | - | - | 1 | |
| -------------TGTTCAGAGAGCCACTTAGACAGGGT------------------------------------------------------------------------------ | 26 | - | - | 1 | |
| ----------------------------------------------------------------------------------------------TGACAATAGGAGATGGTTC---- | 19 | - | - | 1 | |
| -------------------------------GACAGGGTATTGCAAACCTTTGG--------------------------------------------------------------- | 23 | - | - | 1 | |
| ----------------------------------------------------------------------------------------------TGACAATAGGAGATGGTTCTG-- | 21 | - | - | 1 | |
| --------------------------------------------------------------------------------TGGGTTTGGCTACCTGAC------------------- | 18 | - | - | 1 | |
| -----------------------------------------------------------------------------------------------GACAATAGGAGATGGTTCTG-- | 20 | - | - | 1 | |
| -------------TGTTCAGAGAGCCACTTAGA------------------------------------------------------------------------------------ | 20 | - | - | 1 | |
| -------------------GAGAGCCACTTAGACAGG-------------------------------------------------------------------------------- | 18 | - | - | 1 | |
| --------------------------------------------------------------------------------TGGGTTTGGCTACCTGACA------------------ | 19 | 1 | - | - | |
| -----------------CAGAGAGCCACTTAGACAGGGT------------------------------------------------------------------------------ | 22 | - | - | 1 | |
| rat | ggcacagcgggtctgtTCAGAGAGCCACTTAGACAGGGTAttgcaaacctttggcctagcagccaaggacagcgtgggtctgggtttggctacctgacaataggagatggttctgcc | ||||
| ********************************************************************************************************************* | |||||
| rat | ((((.(((...(((((((((..((((((((((((.......(((....(((((((......)))))))...)))...))))))))..))))..))))..))))).....))).)))) | 0.930 -40.00 | |||
| rat | chromosome:7:96033419:96033535:-1 | intergenic |
sblock10917 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.084 | no | no | 0.38/0.52 | 18/25/0.75 | 0.4 1.2 0.0 2.6 0.0 | 1.6 1.5 2.0 3.2 0.4 | 8 4 2 5 5 | 0 0 0 0 0 | 2 2 1 1 1 | 0 0 0 0 0 | 6 17 44 15 9 | 17 8 -18 5 19 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.32 0.43 0.47 0.38 0.33 | 3 6 6 4 3 | 24 | 3 | 1 | -4 |
| reads | miRBase family seed | ||||
| seed | -------UGGCAUA------------------------------------------------------------------------------------------ | 5 | novel | ||
| seed | ---------------------------------------------------------------------------GAGUUCA---------------------- | 5 | novel | ||
| seed | --------GGCAUAC----------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | -------------------------------------------------------------GGCACAG------------------------------------ | 3 | novel | ||
| seed | ---------------------------------------------AGUCAGA---------------------------------------------------- | 2 | novel | ||
| seed | --------------------UCCUGAA----------------------------------------------------------------------------- | 2 | novel | ||
| seed | -------------------UUCCUGA------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------GUUCCUG------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------AGAAAUG---------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------AGUAGAA------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --------------------------------------------------------------------------TGAGTTCATTGCCTGTTGCTG--------- | 21 | - | - | 3 | |
| --------------------------------------------------------------------------TGAGTTCATTGCCTGTTGCT---------- | 20 | - | - | 2 | |
| ------TTGGCATACATTGTTCCTGA------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| -------TGGCATACATTGTTCCTG------------------------------------------------------------------------------- | 18 | 2 | - | - | |
| ------------------------------------------------------------TGGCACAGTAGAAATGAGTTCA---------------------- | 22 | - | - | 2 | |
| -------------------TTCCTGAACTGGTGAGAGAGTG--------------------------------------------------------------- | 22 | - | 1 | 1 | |
| -----------------TGTTCCTGAACTGGTGAGAGAG----------------------------------------------------------------- | 22 | - | - | 1 | |
| ------TTGGCATACATTGTTCCTG------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------------------------------------CAGTAGAAATGAGTTCATTGCC----------------- | 22 | - | - | 1 | |
| -------TGGCATACATTGTTCCTGAACTGGT------------------------------------------------------------------------ | 25 | - | - | 1 | |
| ------TTGGCATACATTGTTCCTGAACT--------------------------------------------------------------------------- | 23 | - | - | 1 | |
| --------------------------------------------AAGTCAGACGAGATGATGG----------------------------------------- | 19 | - | - | 1 | |
| ------------------GTTCCTGAACTGGTGAGAGAGTG--------------------------------------------------------------- | 23 | - | 1 | - | |
| ------------------------------------------------------------TGGCACAGTAGAAATGAG-------------------------- | 18 | - | - | 1 | |
| ------TTGGCATACATTGTTCCTGAA----------------------------------------------------------------------------- | 21 | - | - | 1 | |
| --------------------------------------------------------------------TAGAAATGAGTTCATTGCCTG--------------- | 21 | - | - | 1 | |
| --------------------------------------------AAGTCAGACGAGATGATGGCACA------------------------------------- | 23 | - | - | 1 | |
| rat | gggtcaTTGGCATACATTGTTCCTGAACTGGTGAGAGAGTGccaAAGTCAGACGAGATGATGGCACAGTAGAAATGAGTTCATTGCCTGTTGCTGccttagccc | ||||
| ******************************************************************************************************** | |||||
| rat | ((((....((((.(((..((...((((((.((......((((((..(((......)))..)))))).......)).))))))..)).)))...))))...)))) | 0.930 -32.52 | |||
| rat | chromosome:7:96054255:96054358:-1 | intergenic |
sblock1979 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.190 | no | no | 0.43/0.53 | 18/25/0.75 | 0.0 2.3 0.0 1.2 0.4 | 0.0 2.3 0.0 1.8 1.1 | 1 3 1 10 8 | 0 0 0 0 0 | 1 1 1 3 2 | 0 0 0 0 0 | 7 12 57 16 4 | 34 22 -19 9 25 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.58 0.57 0.32 0.40 0.32 | 5 5 5 6 2 | 32 | 4 | -7 | 1 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------------------------------UGACUCC------------------- | 8 | novel | |||
| seed | ---------------------------------------------------------------------------GACUAGG----------------------------------- | 7 | novel | |||
| seed | -------------------------------------------------------------------------------AGGACUG------------------------------- | 7 | novel | |||
| seed | --------------------------------------------------------------------------------------------GACUCCU------------------ | 3 | novel | |||
| seed | -------------------------------------------------------------------------AUGACUA------------------------------------- | 2 | novel | |||
| seed | -------------GCCUAAU------------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------GUAUCCU---------------------------------------------------- | 1 | novel | |||
| seed | --------------------AGACUUU------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | --------CAGCUGC------------------------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T5S1 | |||
| ------------------------------------------------------------------------------TAGGACTGCTTCTTGACTCCTGA---------------- | 23 | - | - | - | 5 | |
| --------------------------------------------------------------------------TGACTAGGACTGCTTCTTGACTC-------------------- | 23 | 1 | 1 | - | 3 | |
| ------------------------------------------------------------------------------------------TTGACTCCTGATGGCAGAAGAGA---- | 23 | - | - | - | 5 | |
| -------------------------------------------------------------------------------------------TGACTCCTGATGGCAGAAG------- | 19 | - | - | - | 3 | |
| ------------------------------------------------------------------------------TAGGACTGCTTCTTGACTCC------------------- | 20 | - | - | - | 2 | |
| ------------------------------------------------------------------------------------------TTGACTCCTGATGGCAGA--------- | 18 | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------TTGACTCCTGATGGCAGAAG------- | 20 | - | - | - | 1 | |
| -------------------TAGACTTTGTCCCCTGCTC------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| -------CCAGCTGCCTAATAGACTT------------------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ------------TGCCTAATAGACTTTGTCCCCTG---------------------------------------------------------------------------------- | 23 | - | - | - | 1 | |
| ------------------------------------------------------------------------TATGACTAGGACTGCTTCTTGAC---------------------- | 23 | - | - | - | 1 | |
| ------------------------------------------------------------------------------------------TTGACTCCTGATGGCAGAAGAG----- | 22 | - | - | - | 1 | |
| --------------------------------------------------------------------------TGACTAGGACTGCTTCTTGAC---------------------- | 21 | 1 | - | - | - | |
| ------------------------------------------------------------------------TATGACTAGGACTGCTTC--------------------------- | 18 | - | 1 | - | - | |
| --------------------------------------------------------------------------TGACTAGGACTGCTTCTTGACTCCT------------------ | 25 | - | - | - | 1 | |
| ---------------------------------------------------------TGTATCCTGCTGCCCTATGACT-------------------------------------- | 22 | - | - | - | 1 | |
| ------------TGCCTAATAGACTTTGTCCCC------------------------------------------------------------------------------------ | 21 | - | - | - | 1 | |
| rat | ggtgactccagctgcctaatagactttgtcccctgctcagtctctggggtgggagcatgtatcctgctgccctaTGACTAGGACTGCTTCTTGACTCCTGATGGCAGAAGAGAagcc | |||||
| ********************************************************************************************************************* | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | |||||
| rat | (((..(((...(((((...(((.....(((.......(((((.((((.(((((.(((.((.....))))))))))..)))))))))......)))..)))..)))))..)))..))) | 0.810 -38.42 | ||||
| rat | chromosome:1:129034939:129035055:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
sblock3665 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.184 | no | no | 0.21/0.52 | 19/25/0.75 | 0.0 2.8 0.0 0.0 | 0.0 3.2 0.0 0.0 | 1 5 4 5 | 0 0 0 0 | 1 3 1 1 | 0 0 0 0 | 2 18 17 8 | 18 3 2 14 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.40 0.32 0.33 0.33 | 3 2 3 3 | 16 | 3 | 14 | 14 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------AGGGAAA--------------------- | 5 | novel | ||
| seed | ----------------------------------------------------GGGCAAC--------------------------------- | 5 | novel | ||
| seed | ----------------------UCCCAUU--------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------CCCAUUA-------------------------------------------------------------- | 2 | novel | ||
| seed | ---GAAGGCC---------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------AUUUCCC------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ---------------------------------------------------------------TAGGGAAAACAGCTCACAGAG-------- | 21 | - | - | 5 | |
| ---------------------------------------------------TGGGCAACTTTATAGGGAAAACAG----------------- | 24 | - | - | 4 | |
| ----------------------TCCCATTAATGTAATGAAAC-------------------------------------------------- | 20 | - | 1 | 1 | |
| ---------------------TTCCCATTAATGTAATGAA---------------------------------------------------- | 19 | 1 | - | 1 | |
| --TGAAGGCCTCGGAGTCTATTTCCCA----------------------------------------------------------------- | 25 | 1 | - | - | |
| ------------------TATTTCCCATTAATGTAAT------------------------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------TGGGCAACTTTATAGGGAAAACA------------------ | 23 | - | - | 1 | |
| rat | catgaaggcctcggagtctatttcccattaatgtaatgaaacgtccaaggaTGGGCAACTTTATAGGGAAAACAGCTCACAGAGctgggtgc | ||||
| ******************************************************************************************** | |||||
| rat | (((...((.(((.((((...((((((..(((.((..((...((((....))))..)))).)))..))))))...))))...)))))..))). | 0.510 -23.50 | |||
| rat | chromosome:12:44311967:44312058:1 | intergenic |
sblock8017 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.052 | no | no | 0.32/0.52 | 18/25/0.73 | 0.0 1.9 3.5 0.0 0.0 | 1.3 1.2 4.5 0.0 0.0 | 3 10 11 13 1 | 0 0 0 0 0 | 2 2 1 4 1 | 0 0 0 0 0 | 4 17 23 15 7 | 26 10 2 21 26 | 5arm 5arm 3arm 3arm 3arm | 1 1 2 2 2 | nd nd nd nd nd | 0.36 0.33 0.33 0.55 0.39 | 4 3 2 6 6 | 45 | 6 | 13 | 7 |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------------------------------------------------------AAGCAAC--------------------------- | 19 | novel | |||||
| seed | -----------------------GAGUGUG------------------------------------------------------------------------------------- | 4 | novel | |||||
| seed | --------------------------------------------------------------UUCCCAC---------------------------------------------- | 4 | novel | |||||
| seed | -----CUUCUUG------------------------------------------------------------------------------------------------------- | 3 | novel | |||||
| seed | -------------------CCCUGAG----------------------------------------------------------------------------------------- | 3 | miR-125a/125b/351 | |||||
| seed | --------------------CCUGAGU---------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------------------CCACAAG------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------------------------------AAGACCA--------------------------------------- | 1 | novel | |||||
| seed | ------------------UCCCUGA------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | --------------------------------------------------------------------------------------ACCAGAA---------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------CCCACAA-------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------------------CAGGAAU---------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------------CACAAGA------------------------------------------ | 1 | novel | |||||
| seed | ----------------------------------------------------------------------AGACCAG-------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------------------------AAUAAGC------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------------------TAAGCAACCAGAAGGGTGAG--------------- | 20 | 1 | 1 | - | 2 | - | 13 | |
| ------------------TCCCTGAGTGTGATTTTCAGT---------------------------------------------------------------------------- | 21 | - | - | - | - | - | 3 | |
| -------------------------------------------------------------TTTCCCACAAGACCAGGAA----------------------------------- | 19 | - | - | - | - | - | 3 | |
| ----------------------TGAGTGTGATTTTCAGTTT-------------------------------------------------------------------------- | 19 | - | - | - | - | - | 3 | |
| ----------------------------------------------------------------CCCACAAGACCAGGAATAAG------------------------------- | 20 | - | - | - | - | - | 2 | |
| -------------------CCCTGAGTGTGATTTTCAGT---------------------------------------------------------------------------- | 20 | - | - | - | - | - | 2 | |
| ----GCTTCTTGACTGTGTCCCTGA------------------------------------------------------------------------------------------ | 21 | - | - | - | - | - | 2 | |
| --------------------------------------------------------------------------------TAAGCAACCAGAAGGGTGA---------------- | 19 | - | - | - | 1 | - | 1 | |
| -------------------------------------------------------------------------CCAGGAATAAGCAACCAGA----------------------- | 19 | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------CAAGACCAGGAATAAGCAACCAG------------------------ | 23 | - | - | - | - | - | 1 | |
| -----------------GTCCCTGAGTGTGATTTTCAGT---------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------------AACCAGAAGGGTGAGGCAAGAAG------- | 23 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------AAGACCAGGAATAAGCAACC-------------------------- | 20 | - | - | - | - | - | 1 | |
| -------------------------------------------------------------TTTCCCACAAGACCAGGA------------------------------------ | 18 | - | - | - | - | - | 1 | |
| ----------------------TGAGTGTGATTTTCAGTTTACCT---------------------------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------------GAATAAGCAACCAGAAGGGTGA---------------- | 22 | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------CCACAAGACCAGGAATAAGCA----------------------------- | 21 | - | - | - | - | - | 1 | |
| ----GCTTCTTGACTGTGTCCCTGAGTGT-------------------------------------------------------------------------------------- | 25 | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------TCCCACAAGACCAGGAATA--------------------------------- | 19 | - | - | - | - | - | 1 | |
| rat | gggggcttcttgactgtgtccctgagtgtgattttcagtttacctatgggggggtgcaagctttcccacaagaccaggaaTAAGCAACCAGAAGGGTGAGgcaagaagttgaccc | |||||||
| ******************************************************************************************************************* | ||||||||
| rat | (((.((((((((.((....((((...(((...((((.((((.....((((..(((....)))..))))..))))..))))...)))......))))...))))))))))...))) | 0.900 -38.60 | ||||||
| rat | chromosome:3:76956778:76956892:1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH (5 loci)
block1094306 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.33/0.48 | 18/24/0.92 | 0.3 0.0 0.0 | 2.7 0.0 0.0 | 3 7 1 | 0 0 0 | 2 1 1 | 0 0 0 | 6 13 8 | -6 -12 -1 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.27 0.48 0.38 | 4 4 4 | 12 | 3 | 1 | -1 |
| reads | miRBase family seed | ||||
| seed | --------------AGCUAUA--------------------------------- | 7 | novel | ||
| seed | -------GAGUCAU---------------------------------------- | 2 | novel | ||
| seed | --------AGUCAUA--------------------------------------- | 1 | novel | ||
| seed | --------------------------GUAUUCA--------------------- | 1 | novel | ||
| seed | ---------------GCUAUAC-------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T5S1 | T5S2 | |||
| -------------TAGCTATACAGATGTATTCAC-------------------- | 21 | - | 7 | - | |
| ------TGAGTCATAGCTATACAGATGT-------------------------- | 22 | - | 1 | - | |
| -------GAGTCATAGCTATACAGATGT-------------------------- | 21 | - | 1 | - | |
| ------TGAGTCATAGCTATACAG------------------------------ | 18 | - | - | 1 | |
| -------------------------TGTATTCACGGAGGATGACTG-------- | 21 | 1 | - | - | |
| --------------AGCTATACAGATGTATTCACGGAG---------------- | 24 | - | 1 | - | |
| rat | gcgcagtgagtcaTAGCTATACAGATGTATTCACggaggatgactgtggtgtgt | ||||
| ****************************************************** | |||||
| rat | (((((.((((((((..((((((....))))....))...)))))).)).))))) | 0.960 -13.00 | |||
| rat | chromosome:20:5566555:5566608:1 | intergenic ## {Repeats: dust 5566619 5566620 0 class=dust} |
sblock6783 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.026 | no | no | 0.52/0.65 | 19/24/0.74 | 0.5 0.0 0.5 | 0.0 0.0 1.5 | 11 10 11 | 0 0 0 | 5 2 3 | 0 0 0 | 0 10 0 | 2 -11 9 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.26 0.46 0.61 | 4 4 10 | 46 | 6 | 10 | 6 |
| reads | miRBase family seed | |||||||
| seed | -----------GCGAAUC----------------------------------------------- | 16 | novel | |||||
| seed | ---GAGGCAC------------------------------------------------------- | 11 | novel | |||||
| seed | -------------------------------------------GUGUCUU--------------- | 10 | novel | |||||
| seed | -CUGAGGC--------------------------------------------------------- | 7 | novel | |||||
| seed | -------------GAAUCGA--------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------GCCCAUG--------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T5S1 | T5S2 | |||
| ----------TGCGAATCGAGGAACCCTCCTCCC------------------------------- | 24 | 2 | - | - | - | 10 | - | |
| --TGAGGCACTGCGAATCGAG-------------------------------------------- | 19 | - | - | 1 | 1 | 8 | - | |
| TCTGAGGCACTGCGAATCGAG-------------------------------------------- | 21 | - | 2 | - | 2 | 3 | - | |
| ------------------------------------------TGTGTCTTTGCCCCCTCTTCCTT | 23 | 3 | - | 1 | - | 3 | - | |
| ----------TGCGAATCGAGGAACCCTCC----------------------------------- | 20 | - | - | - | - | 2 | - | |
| ------------------------------------------TGTGTCTTTGCCCCCTCTT---- | 19 | - | - | - | - | 2 | - | |
| ------------------------------------------TGTGTCTTTGCCCCCTCTTC--- | 20 | - | - | - | - | 1 | - | |
| --TGAGGCACTGCGAATCGAGG------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ------------------------------------CGCCCATGTGTCTTTGCCCCCTC------ | 23 | - | - | - | - | 1 | - | |
| ----------TGCGAATCGAGGAACCCTCCT---------------------------------- | 21 | - | - | - | - | 1 | - | |
| ----------TGCGAATCGAGGAACCCTCCTC--------------------------------- | 22 | - | - | - | - | 1 | - | |
| ------------CGAATCGAGGAACCCTCCTC--------------------------------- | 20 | - | - | - | - | 1 | - | |
| rat | TCTGAGGCACTGCGAATCGAGGAACCCTCCTCCCgccgcccaTGTGTCTTTGCCCCCTCTTCCTT | |||||||
| ***************************************************************** | ||||||||
| rat | ...(((((((.(((....(((((....)))))....)))....)))))))............... | 0.970 -17.50 | ||||||
| rat | chromosome:20:5529510:5529574:-1 | intergenic |
sblock8065 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.028 | no | no | 0.26/0.48 | 18/26/0.71 | 0.2 0.0 | 3.2 0.5 | 4 12 | 0 0 | 1 8 | 0 0 | 19 9 | -1 15 | 5arm_loop 3arm | 1 9 | nd nd | 0.30 0.41 | 4 3 | 31 | 8 | 18 | 12 |
| reads | miRBase family seed | |||||||||
| seed | -------------------------------------------------------------------GUUUCAA----------------------- | 27 | novel | |||||||
| seed | --------------------CUGAGCA---------------------------------------------------------------------- | 3 | novel | |||||||
| seed | ---------------------UGAGCAU--------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------TGTTTCAATAGTCTGATAAC----------- | 20 | 2 | 1 | - | - | - | 1 | 6 | 1 | |
| ------------------------------------------------------------------TGTTTCAATAGTCTGATAACCC--------- | 22 | - | - | - | - | 1 | - | 2 | 1 | |
| ------------------------------------------------------------------TGTTTCAATAGTCTGATAACCCAA------- | 24 | 1 | 1 | 1 | - | - | - | 1 | - | |
| -------------------TCTGAGCATGATTATTCC------------------------------------------------------------ | 18 | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------------------------------TGTTTCAATAGTCTGATAACCCAAGT----- | 26 | - | - | - | - | - | 1 | 1 | - | |
| ------------------------------------------------------------------TGTTTCAATAGTCTGATAACCCAAG------ | 25 | 1 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------TGTTTCAATAGTCTGATAA------------ | 19 | - | - | - | 2 | - | - | - | - | |
| --------------------CTGAGCATGATTATTCCTGGGGAAA---------------------------------------------------- | 25 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------TGTTTCAATAGTCTGATAACC---------- | 21 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------TGTTTCAATAGTCTGATAACCCA-------- | 23 | - | - | - | - | - | - | 1 | - | |
| -------------------TCTGAGCATGATTATTCCTGGGG------------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| rat | gctctgggctgcttctttcTCTGAGCATGATTATTCCtggggaaattctaattccttggggttcatTGTTTCAATAGTCTGATAACCCaagtgagca | |||||||||
| ************************************************************************************************* | ||||||||||
| rat | ((((((((.....((...((.(((((((((....(((..(((((.......)))))..))).)))).))).))..))...))...))))...)))). | 0.710 -27.30 | ||||||||
| rat | chromosome:3:76971421:76971517:1 | intergenic |
sblock8752 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.324 | no | no | 0.40/0.58 | 18/22/0.82 | 1.2 0.0 0.0 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.5 | 4 2 1 1 24 1 1 2 | 0 0 0 0 0 0 0 0 | 1 2 1 1 2 1 1 1 | 0 0 0 0 0 0 0 0 | 7 17 24 44 45 23 13 0 | 19 13 3 -15 -4 19 29 41 | 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm 3arm | 1 1 1 1 1 1 1 1 | nd nd nd nd nd nd nd nd | 0.27 0.44 0.57 0.47 0.60 0.37 0.21 0.63 | 3 4 7 4 7 4 4 12 | 39 | 4 | 0 | -2 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------GAAGCUU--------------------------------------------------------- | 27 | novel | |||
| seed | --------GUGAGCA-------------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------------------------------GGGCUGC------------ | 2 | novel | |||
| seed | ------------------CACCUUU---------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------------------AUUGCAG------------------------ | 1 | novel | |||
| seed | ---------------------------------------------AGCUGAA------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------GACAUCC--------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------GAGCAGU------------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------------------------------------------------------CCCAGAA---------------------------------- | 1 | novel | |||
| seed | -----------AGCAGUU----------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| ------------------------------------------------TGAAGCTTCGGTCTTAAAAC--------------------------------------------- | 20 | 2 | - | - | 24 | |
| -----------------TCACCTTTGACATCCAGC------------------------------------------------------------------------------ | 18 | - | - | 1 | 1 | |
| -------TGTGAGCAGTTCACCTTTGACA------------------------------------------------------------------------------------ | 22 | - | - | - | 2 | |
| ------------------------TGACATCCAGCTCTTGACCAC-------------------------------------------------------------------- | 21 | - | 1 | - | - | |
| ------------------------------------------------TGAAGCTTCGGTCTTAAAACGG------------------------------------------- | 22 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------------TGGGCTGCGTGAAGTTAGAA | 20 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------------TGGGCTGCGTGAAGTTAGA- | 19 | - | - | - | 1 | |
| --------------------------------------------CAGCTGAAGCTTCGGTCTT-------------------------------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------GATTGCAGGGTATGGGCTG------------- | 19 | - | - | - | 1 | |
| ----------GAGCAGTTCACCTTTGACA------------------------------------------------------------------------------------ | 19 | - | - | - | 1 | |
| -----------------------------------------------------------------------ACCCAGAAGTGATTGCAGG----------------------- | 19 | - | - | - | 1 | |
| ---------TGAGCAGTTCACCTTTGACA------------------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| rat | gcagtgctgtgagcagttcacctttgacatccagctcttgaccacagcTGAAGCTTCGGTCTTAAAACggaacccagaagtgattgcagggtatgggctgcgtgaagttagaa | |||||
| ***************************************************************************************************************** | ||||||
| rat | (((((.(((((.((((.((((.((((...(((.......((((..(((....)))..)))).......)))...)))).))))))))....))))))))))............ | 0.450 -32.04 | ||||
| rat | chromosome:4:164243062:164243174:-1 | intergenic |
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