other hairpins
novel_cloningOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH (5 loci)
sblock9454 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.015 | no | no | 0.47/0.57 | 19/23/0.80 | 0.0 0.6 | 0.0 1.9 | 1 19 | 0 0 | 1 4 | 0 0 | 14 25 | 7 -17 | 5arm 3arm_loop | 1 1 | nd nd | 0.30 0.43 | 5 4 | 30 | 4 | 0 | 8 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------CUCAUGA---------------------------------------- | 15 | novel | |||
| seed | ----------------------------------------CUCUCAU------------------------------------------ | 4 | novel | |||
| seed | -------------------------------------------UCAUGAU--------------------------------------- | 3 | miR-433 | |||
| seed | --------------------------------------------CAUGAUG-------------------------------------- | 3 | novel | |||
| seed | -------------------------------------AGUCUCU--------------------------------------------- | 3 | novel | |||
| seed | ---------------CAAGUGC------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------UCUCUCA------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| -----------------------------------------TCTCATGATGTCCCTTGGCCTGG------------------------- | 23 | 1 | - | 9 | 1 | |
| ---------------------------------------TCTCTCATGATGTCCCTTG------------------------------- | 19 | - | - | 4 | - | |
| -----------------------------------------TCTCATGATGTCCCTTGGCC---------------------------- | 20 | - | - | 3 | - | |
| -------------------------------------------TCATGATGTCCCTTGGCCTG-------------------------- | 20 | 2 | 1 | - | - | |
| ------------------------------------------CTCATGATGTCCCTTGGCCTG-------------------------- | 21 | - | - | 3 | - | |
| ------------------------------------TAGTCTCTCATGATGTCCCTTGG------------------------------ | 23 | - | - | 2 | - | |
| ------------------------------------TAGTCTCTCATGATGTCCC---------------------------------- | 19 | - | - | 1 | - | |
| -----------------------------------------TCTCATGATGTCCCTTGGC----------------------------- | 19 | - | - | 1 | - | |
| --------------TCAAGTGCTTTCCCAGGCTG------------------------------------------------------- | 20 | - | - | 1 | - | |
| --------------------------------------GTCTCTCATGATGTCCCTTG------------------------------- | 20 | - | - | 1 | - | |
| rat | aggtgactctactgtcaagtgctttcccaggctggctagTCTCTCATGATGTCCCTTGGCCTGGcttccctcacctgcagctgatcact | |||||
| ***************************************************************************************** | ||||||
| rat | .(((((.((..(((.((.(((.....(((((((((...(((......)))...))..))))))).......))).)))))..))))))) | 1.000 -28.50 | ||||
| rat | chromosome:5:114563842:114563930:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH (5 loci)
sblock10752 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.399 | no | no | 0.25/0.45 | 18/21/0.93 | 0.0 0.0 0.0 0.0 | 0.5 0.0 0.0 0.0 | 2 1 6 26 | 0 0 0 0 | 1 1 3 5 | 0 0 0 0 | 28 43 57 16 | 11 -4 -20 18 | 5arm 5arm_loop 3arm_loop 3arm | 5 8 8 8 | nd nd nd nd | 0.33 0.53 0.43 0.35 | 2 5 6 3 | 46 | 7 | 0 | -17 |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------------------------------ACCAUUU---------------------------- | 34 | novel | ||||||
| seed | ----------------------------------------------------------GUGAUGA----------------------------------------------------- | 8 | novel | ||||||
| seed | -----------------------------AGGAUGG---------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | ---------------------------------------------------------------GAACACU------------------------------------------------ | 1 | novel | ||||||
| seed | --------------------------------------------ACAAGGU------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------------TACCATTTCATTTCTTAATG---------------- | 20 | - | - | 1 | 3 | 1 | 26 | 2 | |
| ---------------------------------------------------------TGTGATGAACACTGCCATACA---------------------------------------- | 21 | 1 | 1 | - | - | - | 6 | - | |
| -------------------------------------------TACAAGGTCAATGTTGTGA-------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| ----------------------------TAGGATGGTGTAATGTAC------------------------------------------------------------------------ | 18 | - | - | - | - | - | 1 | - | |
| ----------------------------TAGGATGGTGTAATGTACA----------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------TGAACACTGCCATACAAGCA------------------------------------ | 20 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------TACCATTTCATTTCTTAATGC--------------- | 21 | - | - | - | - | - | 1 | - | |
| rat | atgaggacctggtatagattaattgtagtaggatggtgtaatgtacaaggtcaatgttgtgatgaacactgccatacaagcaTACCATTTCATTTCTTAATGcttcctgcctgcttta | ||||||||
| ********************************************************************************************************************** | |||||||||
| rat | .(((((....((((..((...((((.(((..((((((((..((((...((.((.((((......)))).)))).))))...))))))))..)))...))))...)).))))..))))) | 0.950 -24.90 | |||||||
| rat | chromosome:7:19398329:19398446:-1 | intergenic |
sblock3392 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.167 | no | no | 0.43/0.60 | 19/23/0.90 | 0.0 0.0 | 0.0 0.0 | 4 3 | 0 0 | 1 3 | 0 0 | 21 19 | 12 11 | 5arm 3arm | 1 1 | nd nd | 0.40 0.40 | 3 4 | 10 | 3 | 4 | 3 |
| reads | miRBase family seed | ||||
| seed | ----------------------GGAGACA------------------------------------------------------------------------------------ | 5 | novel | ||
| seed | ---------------------------------------------------------------------------CCCAGCU------------------------------- | 3 | novel | ||
| seed | ---------------------UGGAGAC------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------CAUGGAG--------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S1 | |||
| ---------------------TGGAGACAGATAAGGACACT------------------------------------------------------------------------ | 20 | - | - | 4 | |
| --------------------------------------------------------------------------TCCCAGCTCTGACACCAGTG------------------- | 20 | 1 | 1 | 1 | |
| ---------------------TGGAGACAGATAAGGACAC------------------------------------------------------------------------- | 19 | - | - | 1 | |
| --------------------ATGGAGACAGATAAGGACACT------------------------------------------------------------------------ | 21 | - | - | 1 | |
| ------------------CCATGGAGACAGATAAGGACACT------------------------------------------------------------------------ | 23 | - | - | 1 | |
| rat | gatgagtcactgaaggtgccaTGGAGACAGATAAGGACACTaggagtcaccggctcgttctacctggtgctgtgtcccagctctgacaccagtggcaaacatcctgggccatt | ||||
| ***************************************************************************************************************** | |||||
| rat | ((((.(((...((...((((((((...((((...((((((....((.((((((..........))))))))))))))....))))...))).)))))....))...))))))) | 0.950 -35.90 | |||
| rat | chromosome:12:5606296:5606408:1 | intergenic |
sblock4407 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.42/0.55 | 19/24/0.91 | 0.0 0.0 0.3 | 0.0 0.0 0.9 | 1 1 15 | 0 0 0 | 1 1 4 | 0 0 0 | 19 25 8 | 17 6 23 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.32 0.33 0.35 | 3 4 5 | 23 | 4 | 19 | 19 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------------------------CCGAGUC----------------------- | 12 | novel | |||
| seed | -----------------------------------------------------------------------------------UCCGAGU------------------------ | 8 | novel | |||
| seed | --------------------------GGAAAAG--------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------------------------AGGCAAG---------------- | 1 | novel | |||
| seed | --------------------GAGUGUG--------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------------------TCCGAGTCAGGCAAGATGGT----------- | 20 | 1 | 1 | 7 | - | |
| ----------------------------------------------------------------------------------TTCCGAGTCAGGCAAGATGGTT---------- | 22 | - | - | 5 | 1 | |
| -----------------------------------------------------------------------------------TCCGAGTCAGGCAAGATGGTTAG-------- | 23 | - | - | 3 | - | |
| ------------------------------------------------------------------------------------------CAGGCAAGATGGTTAGCTAG---- | 20 | - | - | 1 | - | |
| ----------------------------------------------------------------------------------TTCCGAGTCAGGCAAGATGG------------ | 20 | - | - | 1 | - | |
| -------------------------TGGAAAAGAGCAGAGAACAAGAAG----------------------------------------------------------------- | 24 | - | - | 1 | - | |
| -------------------TGAGTGTGGAAAAGAGCAG---------------------------------------------------------------------------- | 19 | - | 1 | - | - | |
| ----------------------------------------------------------------------------------TTCCGAGTCAGGCAAGATG------------- | 19 | - | - | 1 | - | |
| rat | gttcataagcaaagccgcttgagtgtggaaaagagcagagaacaagaagactatcaaagggagtctggggttgctgctccccTTCCGAGTCAGGCAAGATGGTTAGctaggagc | |||||
| ****************************************************************************************************************** | ||||||
| rat | ((((...(((..((((((((((...(((((..((((((..(((....(((((.((....)))))))...))).))))))...)))))..)))))).....)))).)))..)))) | 1.000 -37.30 | ||||
| rat | chromosome:15:257034:257147:-1 | intergenic |
sblock5557 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.595 | no | no | 0.43/0.74 | 18/22/0.82 | 0.0 0.9 0.0 | 0.0 0.9 0.0 | 1 9 7 | 0 0 0 | 1 2 1 | 0 0 0 | 0 24 6 | 34 7 16 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.63 0.50 0.33 | 6 5 3 | 22 | 2 | 8 | 10 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------AGGACAG------------------- | 9 | novel | |
| seed | -------------------------GUGAUUU-------------------------------------------------------------------- | 5 | novel | |
| seed | ---------------------------GAUUUGG------------------------------------------------------------------ | 4 | novel | |
| seed | -----------------------CUGUGAU---------------------------------------------------------------------- | 3 | novel | |
| seed | -GGUAUGU-------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------------------------------------------TAGGACAGGCAGTTTATGTGT------ | 21 | - | 7 | |
| ------------------------TGTGATTTGGACTCCCTTCT-------------------------------------------------------- | 20 | - | 5 | |
| --------------------------TGATTTGGACTCCCTTCTAC------------------------------------------------------ | 20 | - | 4 | |
| ----------------------GCTGTGATTTGGACTCCCTTCT-------------------------------------------------------- | 22 | 1 | 1 | |
| -------------------------------------------------------------------------TAGGACAGGCAGTTTATG--------- | 18 | - | 2 | |
| GGGTATGTGGCGGGGCGAG--------------------------------------------------------------------------------- | 19 | - | 1 | |
| ----------------------GCTGTGATTTGGACTCCCT----------------------------------------------------------- | 19 | - | 1 | |
| rat | gggtatgtggcggggcgagcgagcTGTGATTTGGACTCCCTTCTACcgctgctgctaagtagctgtggcctctTAGGACAGGCAGTTTATGTGTtctcca | |||
| **************************************************************************************************** | ||||
| rat | .......(((.((..((...(((((((...(((..((.....((((.((((((....)))))).))))......))..))))))))))...))..))))) | 0.890 -30.80 | ||
| rat | chromosome:18:63574977:63575076:-1 | intergenic |
sblock7923 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.149 | no | no | 0.37/0.50 | 19/22/0.75 | 0.9 0.0 | 0.7 0.0 | 10 2 | 0 0 | 2 2 | 0 0 | 6 7 | 6 12 | 5arm 3arm | 1 1 | nd nd | 0.40 0.32 | 4 3 | 12 | 3 | 0 | 3 |
| reads | miRBase family seed | ||||
| seed | -------GAUACAC------------------------------------------------------------------ | 5 | novel | ||
| seed | --------AUACACC----------------------------------------------------------------- | 3 | novel | ||
| seed | -------------------------------------------------------GGCCUCU------------------ | 2 | novel | ||
| seed | ----------ACACCAA--------------------------------------------------------------- | 2 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S1 | |||
| -------GATACACCAAGCAGGCTAGA----------------------------------------------------- | 20 | - | - | 3 | |
| ------TGATACACCAAGCAGGCTAGA----------------------------------------------------- | 21 | 1 | - | 2 | |
| ------------------------------------------------------TGGCCTCTTTATATGAGAA------- | 19 | - | 1 | 1 | |
| ------TGATACACCAAGCAGGCTAG------------------------------------------------------ | 20 | - | - | 2 | |
| ---------TACACCAAGCAGGCTAGATAAC------------------------------------------------- | 22 | - | - | 1 | |
| ---------TACACCAAGCAGGCTAGAT---------------------------------------------------- | 19 | - | - | 1 | |
| rat | ccaaacTGATACACCAAGCAGGCTAGATAACgttggggtgtgcctgaccatacaTGGCCTCTTTATATGAGAAtcttgga | ||||
| ******************************************************************************** | |||||
| rat | ((((.((.(((....(((.((((((......((..((.....))..))......)))))))))..))).))....)))). | 0.480 -19.90 | |||
| rat | chromosome:3:76930873:76930952:1 | intergenic |
novel_cloningOK_shortStem_5varHIGH (5 loci)
block881663 [novel_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.035 | no | no | 0.43/0.50 | 20/25/0.90 | 2.0 | 2.9 | 10 | 0 | 3 | 0 | 3 | 5 | 3arm | 1 | nd | 0.25 | 2 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------CCUCUUU---------------------- | 7 | novel | ||
| seed | ----------------------------------------------------------GACAUUA--------------- | 2 | novel | ||
| seed | ---------------------------------------------------------UGACAUU---------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| --------------------------------------------------TCCTCTTTGACATTACCAGAG--------- | 21 | 3 | - | - | |
| --------------------------------------------------TCCTCTTTGACATTACCAGAGCAC------ | 24 | 1 | - | 1 | |
| ---------------------------------------------------------TGACATTACCAGAGCACCTC--- | 20 | - | - | 2 | |
| --------------------------------------------------------TTGACATTACCAGAGCACCTC--- | 21 | - | - | 1 | |
| --------------------------------------------------TCCTCTTTGACATTACCAGAGCACC----- | 25 | - | - | 1 | |
| --------------------------------------------------TCCTCTTTGACATTACCAGAGC-------- | 22 | - | 1 | - | |
| rat | ccctggggttcatttagtttttgttcacaaaaagaggtctttgccgcctcTCCTCTTTGACATTACCAGAGCACCTCggg | ||||
| ******************************************************************************** | |||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||||
| rat | .((((((((...(((.((...((((.......((((((.......)))))).......))))..)).)))..)))))))) | 0.770 -22.24 | |||
| rat | chromosome:1:129025646:129025725:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
block2088751 [novel_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.028 | no | no | 0.41/0.46 | 20/24/1.00 | 1.9 | 1.9 | 13 | 0 | 3 | 0 | 1 | 14 | 3arm | 9 | nd | 0.13 | 1 | 20 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------UCCAUGG---------------- | 11 | novel | ||
| seed | --------------------------------------------------------------------------UCUCUUC--------------------- | 8 | novel | ||
| seed | --------------------------------------------------------------------------------CCAUGGU--------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------TTCCATGGTGTTTACTCTCAGTG- | 23 | - | 8 | - | |
| -------------------------------------------------------------------------GTCTCTTCCATGGTGTTTACTCT------ | 23 | 1 | 5 | 1 | |
| ------------------------------------------------------------------------------TTCCATGGTGTTTACTCTCAGT-- | 22 | - | 2 | - | |
| -------------------------------------------------------------------------------TCCATGGTGTTTACTCTCAG--- | 20 | - | 1 | - | |
| -------------------------------------------------------------------------GTCTCTTCCATGGTGTTTACTCTC----- | 24 | - | 1 | - | |
| ------------------------------------------------------------------------------TTCCATGGTGTTTACTCTCAG--- | 21 | - | 1 | - | |
| rat | gtatctggggatttagacttcaatttgccaggagaagtgagttgcaatgtcataggtccctgtgacaagatttGTCTCTTCCATGGTGTTTACTCTCAGTGc | ||||
| ****************************************************************************************************** | |||||
| rat | (((.((((((...(((((........(((((((((..((((((....((((((((....)))))))).))))))..))).)).))))))))).))))))))) | 0.950 -31.00 | |||
| rat | chromosome:7:17109502:17109603:-1 | intergenic |
block2089185 [novel_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.050 | no | no | 0.32/0.46 | 19/24/0.91 | 0.0 0.0 1.9 | 0.0 0.0 1.9 | 2 1 13 | 0 0 0 | 1 1 3 | 0 0 0 | 23 17 1 | 1 5 14 | 3arm 3arm 3arm | 7 7 9 | nd nd nd | 0.26 0.29 0.13 | 2 2 1 | 23 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------UCCAUGG---------------- | 11 | novel | ||
| seed | --------------------------------------------------------------------------UCUCUUC--------------------- | 8 | novel | ||
| seed | -------------------------------------------------------------GUGACAA---------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------CAAUAUU------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------------------------------------CCAUGGU--------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------TTCCATGGTGTTTACTCTCAGTG- | 23 | - | 8 | - | |
| -------------------------------------------------------------------------GTCTCTTCCATGGTGTTTACTCT------ | 23 | 1 | 5 | 1 | |
| ------------------------------------------------------------TGTGACAATATTTGTCTCT----------------------- | 19 | - | 2 | - | |
| ------------------------------------------------------------------------------TTCCATGGTGTTTACTCTCAGT-- | 22 | - | 2 | - | |
| ----------------------------------------------------------------ACAATATTTGTCTCTTCCATG----------------- | 21 | - | 1 | - | |
| -------------------------------------------------------------------------------TCCATGGTGTTTACTCTCAG--- | 20 | - | 1 | - | |
| -------------------------------------------------------------------------GTCTCTTCCATGGTGTTTACTCTC----- | 24 | - | 1 | - | |
| ------------------------------------------------------------------------------TTCCATGGTGTTTACTCTCAG--- | 21 | - | 1 | - | |
| rat | gtatctggggatttagacttcaatttgccaggagaagtgagttgcaatgtcataggtccctgtgacaatatttGTCTCTTCCATGGTGTTTACTCTCAGTGc | ||||
| ****************************************************************************************************** | |||||
| rat | (((.((((((...(((((........(((((((((..(((((.....((((((((....))))))))..)))))..))).)).))))))))).))))))))) | 0.930 -28.90 | |||
| rat | chromosome:7:17362319:17362420:-1 | intergenic |
block2256633 [novel_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.104 | no | no | 0.45/0.50 | 19/22/0.89 | 2.2 | 2.2 | 11 | 0 | 3 | 0 | 1 | 28 | 5arm | 1 | nd | 0.27 | 3 | 18 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --AGGACUG------------------------------------------------------------------------------------------------------- | 9 | novel | ||
| seed | --------GCUACUC------------------------------------------------------------------------------------------------- | 7 | novel | ||
| seed | --------------CACACCU------------------------------------------------------------------------------------------- | 2 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T5S1 | |||
| -TAGGACTGCTACTCACACCTGT----------------------------------------------------------------------------------------- | 22 | 2 | - | 7 | |
| -------TGCTACTCACACCTGTATTGTG----------------------------------------------------------------------------------- | 22 | - | 1 | 4 | |
| -------TGCTACTCACACCTGTATTG------------------------------------------------------------------------------------- | 20 | - | - | 2 | |
| -------------TCACACCTGTATTGTGCCT-------------------------------------------------------------------------------- | 19 | - | 1 | 1 | |
| rat | tTAGGACTGCTACTCACACCTGTATTGTGccttatccatttctgaactcctctgggctctttgttgatttctgatacttgaatttggcacagctctgctttgtgagcaccta | ||||
| **************************************************************************************************************** | |||||
| rat | .((((..(((...(((((...((((((((((..((.((..((.(((.((.....(((.....))))).))).))....)).))..)))))))...)))..)))))))))))) | 0.540 -24.10 | |||
| rat | chromosome:7:121568617:121568728:1 | intergenic |
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