other hairpins
novel_lenNOK_Multihit_shortStem_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (5 loci)
block2070013 [novel_lenNOK_Multihit_shortStem_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.368 | no | no | 0.38/0.38 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | -3 | 5arm_loop | 15 | 0 | 0.38 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -UCUAACC------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| TTCTAACCAGTATTCTCTGTTTGCAG------------------------------ | 26 | 1 | |
| rat | TTCTAACCAGTATTCTCTGTTTGCAGgtgtccagtgtgaggtgcagctggtggagt | ||
| ******************************************************** | |||
| ------------------------------------------------------------------ | ENSRNOT00000041706 ENSRNOG00000034190 LOC678701 | ||
| ------------------------------------------------------------------ | ENSRNOT00000006888 ENSRNOG00000034190 LOC678701 | ||
| ------------------------------------------------------------------ | ENSRNOT00000040702 ENSRNOG00000034190 LOC678701 | ||
| ------------------------------------------------------------------ | ENSRNOT00000056844 ENSRNOG00000034190 LOC678701 | ||
| +++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047600 ENSRNOG00000030194 | ||
| ..........................................>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000044684 ENSRNOG00000030194 | ||
| ..........................................>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000049058 ENSRNOG00000030194 | ||
| rat | ((((.((((((..((((...(((........)))...))))....)))))))))). | 0.410 -13.40 |
| rat | chromosome:6:138889412:138889467:1 | Opposite_strand|Intronic_coding|ENSRNOT00000056844|ENSRNOG00000034190 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000056843|ENSRNOG00000034190 ## Same_strand|Intronic_coding|ENSRNOT00000047600|ENSRNOG00000030194 ## Same_strand|Boundary_non-coding|ENSRNOT00000049058|ENSRNOG00000030194 ## ENSRNOG00000034190|protein_coding|LOC678701|LOC366747 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5I0L9] ## ENSRNOG00000030194|protein_coding|| |
novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (5 loci)
block1889613 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.576 | no | no | 0.44/0.56 | 18/25/0.64 | 2.0 | 1.9 | 38 | 0 | 6 | 0 | 7 | -10 | 5arm_loop_3arm | 1 | nd | 0.52 | 6 | 74 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------ACACAUG----------------------------------------- | 32 | novel | |||||
| seed | --------CCUACAC-------------------------------------------- | 15 | novel | |||||
| seed | -----------------GUUGCCU----------------------------------- | 14 | novel | |||||
| seed | --------------------------AGUGAGC-------------------------- | 5 | novel | |||||
| seed | -------------------UGCCUCU--------------------------------- | 3 | novel | |||||
| seed | --------------------GCCUCUA-------------------------------- | 3 | novel | |||||
| seed | ------------CACAUGU---------------------------------------- | 2 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| ----------TACACATGTTGCCTCTAGTGAG--------------------------- | 22 | 1 | - | 2 | - | 1 | 22 | |
| ----------------TGTTGCCTCTAGTGAGCCTTCACA------------------- | 24 | - | - | 1 | - | - | 9 | |
| -------TCCTACACATGTTGCCTCTAGTGAG--------------------------- | 25 | 1 | - | - | - | - | 7 | |
| -------------------------TAGTGAGCCTTCACATCAG--------------- | 19 | - | - | - | - | - | 5 | |
| ----------TACACATGTTGCCTCTAGTG----------------------------- | 20 | 2 | - | - | - | - | 2 | |
| -------------------TGCCTCTAGTGAGCCTTCACATCAG--------------- | 25 | - | - | - | - | - | 3 | |
| ------------------TTGCCTCTAGTGAGCCTT----------------------- | 18 | - | - | - | - | - | 2 | |
| -------TCCTACACATGTTGCCTCT--------------------------------- | 19 | - | 1 | - | - | - | 1 | |
| -------TCCTACACATGTTGCCTC---------------------------------- | 18 | - | - | - | 1 | - | 1 | |
| ----------------TGTTGCCTCTAGTGAGCCT------------------------ | 19 | - | - | - | - | - | 2 | |
| -----------ACACATGTTGCCTCTAGTGAG--------------------------- | 21 | 2 | - | - | - | - | - | |
| -------TCCTACACATGTTGCCTCTAG------------------------------- | 21 | - | - | - | - | - | 2 | |
| ----------------TGTTGCCTCTAGTGAGCCTTCA--------------------- | 22 | - | - | - | - | - | 1 | |
| ----------TACACATGTTGCCTCTAG------------------------------- | 18 | 1 | - | - | - | - | - | |
| -------TCCTACACATGTTGCCTCTAGTG----------------------------- | 23 | - | - | - | - | - | 1 | |
| ----------------TGTTGCCTCTAGTGAGCC------------------------- | 18 | - | - | - | - | - | 1 | |
| ----------TACACATGTTGCCTCTAGTGAGCCT------------------------ | 25 | 1 | - | - | - | - | - | |
| ------------------TTGCCTCTAGTGAGCCTTCACA------------------- | 22 | - | - | - | - | - | 1 | |
| rat | cttggcaTCCTACACATGTTGCCTCTAGTGAGCCTTCACAtcagcctgagggacccagg | |||||||
| *********************************************************** | ||||||||
| rat | (((((..((((...((.((((......(((......)))..)))).)).)))).))))) | 0.840 -12.40 | ||||||
| rat | chromosome:5:154401537:154401595:1 | intergenic |
block262577 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.643 | no | no | 0.44/0.67 | 18/25/0.23 | 2.0 | 2.8 | 35 | 0 | 9 | 0 | 5 | -1 | 3arm | 1 | nd | 0.33 | 4 | 56 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ----------------------------------CCGCGGG------------------------- | 28 | novel | ||||||||
| seed | ------------------------------------GCGGGUG----------------------- | 12 | novel | ||||||||
| seed | -------------------------------------------UCUGAGA---------------- | 6 | novel | ||||||||
| seed | -----------------------------------------UGUCUGA------------------ | 4 | novel | ||||||||
| seed | -------------------------------------CGGGUGU---------------------- | 2 | novel | ||||||||
| seed | --------------------------------------GGGUGUC--------------------- | 2 | novel | ||||||||
| seed | --------------------------------------------CUGAGAA--------------- | 1 | novel | ||||||||
| seed | ----------------------------------------GUGUCUG------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------GCCGCGGGTGTCTGAGAA--------------- | 18 | 3 | 2 | 2 | - | 5 | 5 | 1 | - | 2 | |
| -----------------------------------CGCGGGTGTCTGAGAATGC------------ | 19 | - | - | - | - | 3 | - | - | - | 2 | |
| ------------------------------------------GTCTGAGAATGCAAAGTGC----- | 19 | 2 | - | - | - | - | 2 | - | - | - | |
| ----------------------------------------GTGTCTGAGAATGCAAAG-------- | 18 | 3 | - | - | - | 1 | - | - | - | - | |
| -----------------------------------CGCGGGTGTCTGAGAATGCAAAG-------- | 23 | - | - | - | - | - | - | - | 1 | 2 | |
| ---------------------------------GCCGCGGGTGTCTGAGAATGC------------ | 21 | - | 1 | - | 1 | - | - | 1 | - | - | |
| ---------------------------------GCCGCGGGTGTCTGAGAAT-------------- | 19 | - | - | - | - | 1 | 1 | - | - | - | |
| ---------------------------------GCCGCGGGTGTCTGAGAATGCA----------- | 22 | - | - | - | - | - | 2 | - | - | - | |
| -----------------------------------CGCGGGTGTCTGAGAATGCA----------- | 20 | - | 1 | - | - | - | - | - | - | - | |
| ---------------------------------------GGTGTCTGAGAATGCAAAG-------- | 19 | - | - | - | - | - | 1 | - | - | - | |
| ------------------------------------GCGGGTGTCTGAGAATGCAAAG-------- | 22 | - | 1 | - | - | - | - | - | - | - | |
| -----------------------------------CGCGGGTGTCTGAGAATG------------- | 18 | - | - | - | - | - | 1 | - | - | - | |
| -----------------------------------CGCGGGTGTCTGAGAATGCAAAGTG------ | 25 | - | - | - | - | - | 1 | - | - | - | |
| ------------------------------------------GTCTGAGAATGCAAAGTG------ | 18 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------TCTGAGAATGCAAAGTGCC---- | 19 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------CGGGTGTCTGAGAATGCAA---------- | 19 | - | - | - | - | 1 | - | - | - | - | |
| -----------------------------------CGCGGGTGTCTGAGAATGCAA---------- | 21 | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------GCCGCGGGTGTCTGAGAATGCAAAG-------- | 25 | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------GCGGGTGTCTGAGAATGC------------ | 18 | - | - | - | - | - | 1 | - | - | - | |
| -------------------------------------CGGGTGTCTGAGAATGCAAAG-------- | 21 | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------GTCTGAGAATGCAAAGTGCCA--- | 21 | - | - | - | - | 1 | - | - | - | - | |
| rat | gcgccgcgctccgggcggcaaacagctgcggtgGCCGCGGGTGTCTGAGAATGCAAAGTGCcatgt | ||||||||||
| ****************************************************************** | |||||||||||
| ..........................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000005156 ENSRNOG00000003687 Rgs2 | ||||||||||
| rat | (((..(((((....(((.((.(((.((((((...)))))).))).))....)))..)))))..))) | 0.670 -23.80 | |||||||||
| rat | chromosome:13:57894437:57894502:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000005156|ENSRNOG00000003687 ## ENSRNOG00000003687|protein_coding|Rgs2|Regulator of G-protein signaling 2 (RGS2). [Source:UniProtKB/Swiss-Prot;Acc:Q9JHX0] |
block1061035 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.043 | no | no | 0.39/0.48 | 18/25/0.52 | 1.1 0.0 | 3.1 0.0 | 38 1 | 0 0 | 7 1 | 0 0 | 20 9 | -24 6 | 3arm_loop 3arm | 1 1 | nd nd | 0.50 0.47 | 5 7 | 64 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------GUAAAAG-------------------------------- | 44 | novel | ||||||
| seed | ---------------------GGACCUC---------------------------------------- | 10 | novel | ||||||
| seed | -------------------------------AAAAGCC------------------------------ | 6 | novel | ||||||
| seed | ----------------------------UGUAAAA--------------------------------- | 2 | novel | ||||||
| seed | --------------------------UCUGUAA----------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------CAGCAGC-------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | |||
| ----------------------------TGTAAAAGCCTTTCAGCA---------------------- | 18 | - | - | 1 | - | - | - | 12 | |
| ----------------------------TGTAAAAGCCTTTCAGCAGCCAGA---------------- | 24 | 1 | - | - | - | - | - | 10 | |
| --------------------TGGACCTCTGTAAAAGCCTTTCAG------------------------ | 24 | 2 | 1 | - | - | - | - | 5 | |
| ----------------------------TGTAAAAGCCTTTCAGCAG--------------------- | 19 | 1 | - | - | 1 | - | - | 5 | |
| ----------------------------TGTAAAAGCCTTTCAGCAGCCAGAA--------------- | 25 | - | - | - | - | - | - | 6 | |
| ------------------------------TAAAAGCCTTTCAGCAGCCAGA---------------- | 22 | - | - | - | - | - | - | 3 | |
| ----------------------------TGTAAAAGCCTTTCAGCAGCCA------------------ | 22 | 1 | - | - | - | - | 1 | 1 | |
| ----------------------------TGTAAAAGCCTTTCAGCAGCCAG----------------- | 23 | - | - | - | - | - | - | 2 | |
| ------------------------------TAAAAGCCTTTCAGCAGCCAGAAAA------------- | 25 | - | - | - | - | - | - | 2 | |
| ----------------------------TGTAAAAGCCTTTCAGCAGCC------------------- | 21 | - | - | - | - | - | - | 2 | |
| ---------------------------CTGTAAAAGCCTTTCAGCAG--------------------- | 20 | - | - | - | - | 1 | - | - | |
| ------------------------------TAAAAGCCTTTCAGCAGCCAGAA--------------- | 23 | - | - | - | - | - | - | 1 | |
| --------------------TGGACCTCTGTAAAAGCCTT---------------------------- | 20 | - | - | - | - | - | - | 1 | |
| ----------------------------------------TCAGCAGCCAGAAAATAAG--------- | 19 | - | - | - | - | - | - | 1 | |
| --------------------TGGACCTCTGTAAAAGCCTTTC-------------------------- | 22 | - | - | - | - | - | - | 1 | |
| -------------------------CTCTGTAAAAGCCTTTCAG------------------------ | 19 | - | - | - | - | - | - | 1 | |
| ---------------------------CTGTAAAAGCCTTTCAGCA---------------------- | 19 | - | - | - | - | - | - | 1 | |
| rat | tgacttagcttggtggcctcTGGACCTCTGTAAAAGCCTTTCAGCAGCCAGAAaataaggccaagtca | ||||||||
| ******************************************************************** | |||||||||
| rat | .(((((.((((..((((..(((((...((.....))...)))))..)))).......)))).))))). | 0.990 -19.00 | |||||||
| rat | chromosome:20:5525546:5525613:-1 | intergenic |
block1487671 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.439 | no | no | 0.43/0.65 | 18/26/0.44 | 1.9 | 0.7 | 25 | 0 | 8 | 0 | 43 | -20 | 3arm_loop | 1 | nd | 0.68 | 11 | 66 | 8 | 0 | 4 |
| reads | miRBase family seed | |||||||||
| seed | -------------------------------------------------CCCAUCC-------------------------------------------------------------- | 20 | novel | |||||||
| seed | ------------------------------------------------------CCUCUAA--------------------------------------------------------- | 16 | novel | |||||||
| seed | ---------------------------------------------------------CUAAAGC------------------------------------------------------ | 10 | novel | |||||||
| seed | -----------------------------------------------------------AAAGCCU---------------------------------------------------- | 8 | novel | |||||||
| seed | ------------------------------------------------UCCCAUC--------------------------------------------------------------- | 4 | novel | |||||||
| seed | ---------------------------------------------UCCUCCC------------------------------------------------------------------ | 3 | novel | |||||||
| seed | --------------------------------------------------------------GCCUUUG------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------------------------CUCUAAA-------------------------------------------------------- | 1 | novel | |||||||
| seed | --------------------------------------------------------------------GGAAGCC------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------------UAAAGCC----------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------AUCCUCU----------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| -----------------------------------------------------TCCTCTAAAGCCTTTGGAAG--------------------------------------------- | 20 | - | - | 1 | 1 | - | - | - | 12 | |
| --------------------------------------------------------TCTAAAGCCTTTGGAAGCC------------------------------------------- | 19 | - | - | - | - | - | - | - | 9 | |
| ------------------------------------------------TCCCATCCTCTAAAGCCTTTGGAAG--------------------------------------------- | 25 | - | - | 1 | - | - | - | 1 | 4 | |
| ------------------------------------------------TCCCATCCTCTAAAGCCTT--------------------------------------------------- | 19 | - | - | - | - | 1 | 1 | 1 | 2 | |
| ------------------------------------------------TCCCATCCTCTAAAGCCTTTGGA----------------------------------------------- | 23 | - | 1 | 1 | - | - | - | - | 2 | |
| ----------------------------------------------------------TAAAGCCTTTGGAAGCCGC----------------------------------------- | 19 | 1 | - | - | - | - | - | - | 2 | |
| --------------------------------------------TTCCTCCCATCCTCTAAAG------------------------------------------------------- | 19 | 1 | 1 | - | - | - | - | - | 1 | |
| -----------------------------------------------CTCCCATCCTCTAAAGCCT---------------------------------------------------- | 19 | - | - | 1 | - | - | - | 1 | 1 | |
| ----------------------------------------------------------TAAAGCCTTTGGAAGCCGCCGTGA------------------------------------ | 24 | - | 1 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------TAAAGCCTTTGGAAGCCGCCGTGAG----------------------------------- | 25 | - | 1 | - | - | - | - | - | 1 | |
| ------------------------------------------------TCCCATCCTCTAAAGCCTTT-------------------------------------------------- | 20 | - | - | - | - | - | - | - | 2 | |
| -----------------------------------------------------TCCTCTAAAGCCTTTGGAAGCC------------------------------------------- | 22 | 1 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------TCCCATCCTCTAAAGCCTTTGGAA---------------------------------------------- | 24 | - | - | - | - | - | - | - | 2 | |
| -----------------------------------------------CTCCCATCCTCTAAAGCC----------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------TGGAAGCCGCCGTGAGTTCCCCAGTC------------------------- | 26 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------CATCCTCTAAAGCCTTTGGAA---------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------CCTCTAAAGCCTTTGGAA---------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------TAAAGCCTTTGGAAGCCGCC---------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------AGCCTTTGGAAGCCGCCGTGAGTTCC------------------------------- | 26 | 1 | - | - | - | - | - | - | - | |
| ------------------------------------------------TCCCATCCTCTAAAGCCTTTGG------------------------------------------------ | 22 | - | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------TCTAAAGCCTTTGGAAGC-------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------CTAAAGCCTTTGGAAGCCGCCGTGA------------------------------------ | 25 | - | - | - | - | - | - | - | 1 | |
| rat | cacgtaagatgcagtcagtgagtcacagagagctcttctgtcccttccTCCCATCCTCTAAAGCCTTTGGAAGCCgccgtgagttccccagtcagatgcactgaaacactttcatgtg | |||||||||
| ********************************************************************************************************************** | ||||||||||
| rat | ((((((((.((...((((((.(((((...((((((....((..(((((....................)))))..))...))))))....))..))).))))))..)))))..))))) | 0.990 -26.75 | ||||||||
| rat | chromosome:3:115212904:115213021:1 | intergenic |
block1751061 [novel_lenNOK_cloningHIGH_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.325 | no | no | 0.50/0.63 | 18/26/0.48 | 1.2 | 0.0 | 59 | 0 | 8 | 0 | 14 | -24 | 3arm | 2 | nd | 0.45 | 4 | 165 | 8 | 0 | 9 |
| reads | miRBase family seed | |||||||||
| seed | ------------------------CCGAUGC------------------------------- | 64 | novel | |||||||
| seed | -----------------------------GCCCAGA-------------------------- | 29 | novel | |||||||
| seed | ---------------GACUUCU---------------------------------------- | 24 | novel | |||||||
| seed | ----------------------CUCCGAU--------------------------------- | 21 | novel | |||||||
| seed | -----------------------------------AUGAUGC-------------------- | 6 | novel | |||||||
| seed | -------------------------------------GAUGCAG------------------ | 5 | novel | |||||||
| seed | --------------------------------CAGAUGA----------------------- | 3 | novel | |||||||
| seed | -------------------------CGAUGCC------------------------------ | 2 | novel | |||||||
| seed | ---------------------------AUGCCCA---------------------------- | 2 | novel | |||||||
| seed | ----------------------------UGCCCAG--------------------------- | 2 | novel | |||||||
| seed | ----------------ACUUCUC--------------------------------------- | 2 | novel | |||||||
| seed | -------------CUGACUU------------------------------------------ | 1 | novel | |||||||
| seed | ----------------------------------------GCAGACA--------------- | 1 | novel | |||||||
| seed | -----------------CUUCUCU-------------------------------------- | 1 | novel | |||||||
| seed | ------------------------------CCCAGAU------------------------- | 1 | novel | |||||||
| seed | -------------------UCUCUCC------------------------------------ | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------TCCGATGCCCAGATGATGCAGACAG-------------- | 25 | 2 | 2 | - | 1 | 2 | - | 45 | - | |
| ----------------------------TGCCCAGATGATGCAGACAG-------------- | 20 | 2 | 1 | - | - | - | - | 14 | - | |
| ---------------------TCTCCGATGCCCAGATGATG--------------------- | 20 | - | - | - | - | - | - | 13 | - | |
| --------------TGACTTCTCTCCGATGCCCAGATGA----------------------- | 25 | 1 | - | - | - | 1 | - | 8 | - | |
| --------------TGACTTCTCTCCGATGCCCAGA-------------------------- | 22 | - | 1 | - | - | - | - | 6 | - | |
| ----------------------------TGCCCAGATGATGCAGACA--------------- | 19 | - | - | - | - | - | - | 6 | - | |
| ----------------------------TGCCCAGATGATGCAGACAGCCCC---------- | 24 | - | - | - | - | - | - | 6 | - | |
| --------------TGACTTCTCTCCGATGCCC----------------------------- | 19 | 2 | - | - | - | - | - | 3 | - | |
| ------------------------------------TGATGCAGACAGCCCCACCTCAG--- | 23 | - | - | 1 | - | - | 1 | 2 | - | |
| -----------------------TCCGATGCCCAGATGATGCA------------------- | 20 | - | - | - | - | - | - | 4 | - | |
| -----------------------TCCGATGCCCAGATGATGC-------------------- | 19 | - | - | - | - | - | - | 3 | - | |
| ---------------------TCTCCGATGCCCAGATGATGCAGA----------------- | 24 | 1 | - | - | - | - | - | 2 | - | |
| ---------------------------ATGCCCAGATGATGCAGACA--------------- | 20 | - | - | - | - | - | - | 2 | - | |
| -----------------------TCCGATGCCCAGATGATGCAGA----------------- | 22 | - | - | - | - | - | - | 2 | - | |
| -----------------------TCCGATGCCCAGATGATGCAGAC---------------- | 23 | - | - | - | - | - | - | 2 | - | |
| --------------------------GATGCCCAGATGATGCAGACAG-------------- | 22 | - | - | - | - | - | - | 2 | - | |
| --------------TGACTTCTCTCCGATGCC------------------------------ | 18 | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------GATGATGCAGACAGCCCCACCTCA---- | 24 | - | - | - | - | - | - | 2 | - | |
| ---------------------TCTCCGATGCCCAGATGATGCAG------------------ | 23 | - | - | - | - | - | - | 2 | - | |
| ----------------------------------GATGATGCAGACAGCCCCACC------- | 21 | - | - | - | - | - | - | 2 | - | |
| ----------------------------------GATGATGCAGACAGCCCCAC-------- | 20 | - | - | - | - | - | - | 1 | - | |
| ------------------TTCTCTCCGATGCCCAGATGATG--------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| -----------------------------GCCCAGATGATGCAGACAG-------------- | 19 | - | - | - | - | - | - | 1 | - | |
| -------------------------------CCAGATGATGCAGACAGCC------------ | 19 | - | - | - | - | - | - | 1 | - | |
| ---------------GACTTCTCTCCGATGCCCAGATGA----------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------GATGATGCAGACAGCCCCACCTCAG--- | 25 | - | - | - | - | - | - | 1 | - | |
| ---------------------TCTCCGATGCCCAGATGAT---------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------CCGATGCCCAGATGATGCAGACA--------------- | 23 | - | - | - | - | - | - | 1 | - | |
| ------------------------CCGATGCCCAGATGATGCAGACAG-------------- | 24 | - | - | - | - | - | - | - | 1 | |
| ------------------------------------TGATGCAGACAGCCCCACCT------ | 20 | - | - | - | - | - | - | 1 | - | |
| ---------------------TCTCCGATGCCCAGATGATGCAGAC---------------- | 25 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------TGCAGACAGCCCCACCTCA---- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------TCTGACTTCTCTCCGATGCCCAGA-------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| ---------------------TCTCCGATGCCCAGATGA----------------------- | 18 | 1 | - | - | - | - | - | - | - | |
| -------------------------------CCAGATGATGCAGACAGCCCCACCTC----- | 26 | - | - | - | - | - | - | 1 | - | |
| ---------------GACTTCTCTCCGATGCCCAG--------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| ----------------ACTTCTCTCCGATGCCCAGATGA----------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| -------------------------------CCAGATGATGCAGACAGCCC----------- | 20 | 1 | - | - | - | - | - | - | - | |
| -----------------------TCCGATGCCCAGATGATGCAGACA--------------- | 24 | - | - | - | - | - | - | 1 | - | |
| rat | ggtttgtggccatctgacttctcTCCGATGCCCAGATGATGCAGACAGccccacctcagcca | |||||||||
| ************************************************************** | ||||||||||
| rat | ((((((.(((..((((...(((((.........))).))..))))..))).))....)))). | 0.580 -14.40 | ||||||||
| rat | chromosome:5:79240314:79240375:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_5varHIGH_loopOverlap (5 loci)
block450886 [novel_lenNOK_cloningHIGH_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.166 | no | no | 0.33/0.61 | 18/25/0.17 | 2.5 1.2 | 0.0 1.2 | 2 69 | 0 0 | 2 10 | 0 0 | 22 34 | 6 -8 | 5arm 5arm_loop_3arm | 2 2 | nd nd | 0.21 0.26 | 2 2 | 109 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------------UUGUCUA------------------------------------------------------------------------- | 42 | novel | |||||||||
| seed | ------------------------------------------GUCUAGG----------------------------------------------------------------------- | 30 | novel | |||||||||
| seed | -----------------------------------ACUGGUU------------------------------------------------------------------------------ | 8 | novel | |||||||||
| seed | -------------------------------------------UCUAGGG---------------------------------------------------------------------- | 7 | novel | |||||||||
| seed | ---------------------------------------GUUGUCU-------------------------------------------------------------------------- | 7 | novel | |||||||||
| seed | --------------------------------------GGUUGUC--------------------------------------------------------------------------- | 5 | novel | |||||||||
| seed | -----------------------------------------UGUCUAG------------------------------------------------------------------------ | 5 | novel | |||||||||
| seed | -----------------------------------------------GGGUUGG------------------------------------------------------------------ | 2 | novel | |||||||||
| seed | -----------------------UUACUGU------------------------------------------------------------------------------------------ | 1 | novel | |||||||||
| seed | ------------------------------------CUGGUUG----------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------GUUUUUG------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------GTTGTCTAGGGTTGGCGTT-------------------------------------------------------------- | 19 | 3 | 2 | 9 | 3 | 1 | 1 | 6 | 9 | 4 | 4 | |
| -----------------------------------------TGTCTAGGGTTGGCGTTGA------------------------------------------------------------ | 19 | 5 | 2 | 4 | 2 | - | 1 | 1 | 3 | 7 | 5 | |
| ----------------------------------GACTGGTTGTCTAGGGTTG------------------------------------------------------------------- | 19 | - | - | 3 | - | - | - | - | - | 4 | 1 | |
| ------------------------------------------GTCTAGGGTTGGCGTTGAAG---------------------------------------------------------- | 20 | - | 2 | - | - | - | - | - | 2 | 1 | 2 | |
| --------------------------------------GGTTGTCTAGGGTTGGCGTT-------------------------------------------------------------- | 20 | 2 | - | 2 | - | - | - | - | - | 2 | - | |
| ----------------------------------------TTGTCTAGGGTTGGCGTT-------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | 1 | 1 | - | |
| -------------------------------------TGGTTGTCTAGGGTTGGCGTT-------------------------------------------------------------- | 21 | - | - | - | 2 | - | - | - | - | - | 1 | |
| ----------------------------------------TTGTCTAGGGTTGGCGTTGA------------------------------------------------------------ | 20 | - | - | - | 1 | - | - | - | 1 | - | - | |
| ----------------------------------------------AGGGTTGGCGTTGAAGCC-------------------------------------------------------- | 18 | 2 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------ACTGGTTGTCTAGGGTTGG------------------------------------------------------------------ | 19 | - | - | 1 | - | - | - | - | - | - | - | |
| --------------------------------------GGTTGTCTAGGGTTGGCG---------------------------------------------------------------- | 18 | - | - | 1 | - | - | - | - | - | - | - | |
| -------------------------------------TGGTTGTCTAGGGTTGGC----------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------TGTTTTTGACTGGTTGTCT-------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | - | - | |
| ----------------------TTTACTGTTTTTGACTGGTTGTCT-------------------------------------------------------------------------- | 24 | - | - | - | 1 | - | - | - | - | - | - | |
| -------------------------------------TGGTTGTCTAGGGTTGGCGTTGAAG---------------------------------------------------------- | 25 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | caaattatatgtttattttaagtttactgtttttGACTGGTTGTCTAGGGTTGGCGTTGAagcctggacattgtaatcctgtctgtaagcccagtgctcttaattgagtatgggaattga | |||||||||||
| ************************************************************************************************************************ | ||||||||||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000013408 ENSRNOG00000010063 Htr2a | |||||||||||
| rat | (((.((.((((((((..(((((..(((((..((((((.((.((((((((.((.......)).)))))))).......)).)))...)))..)))))..))))).)))))))).)).))). | 0.470 -27.80 | ||||||||||
| rat | chromosome:15:55479672:55479791:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000013408|ENSRNOG00000010063 ## ENSRNOG00000010063|protein_coding|Htr2a|5-hydroxytryptamine receptor 2A (5-HT-2A) (Serotonin receptor 2A) (5- HT-2). [Source:UniProtKB/Swiss-Prot;Acc:P14842] |
block1094202 [novel_lenNOK_cloningHIGH_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.335 | no | no | 0.42/0.58 | 18/24/0.58 | 1.0 1.6 0.0 | 2.2 1.4 0.0 | 4 57 1 | 0 0 0 | 2 3 1 | 0 0 0 | 42 38 32 | -15 -22 2 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.61 0.43 0.26 | 7 5 2 | 74 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------CCUACAA------------------------------------------------------ | 39 | novel | ||
| seed | -------------------------------------------------------ACAAAGA--------------------------------------------------- | 28 | novel | ||
| seed | ----------------------------------------------CAACCUC------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------CCUCAAC--------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------AAAGAUG------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------AAGAUGU------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------------AACCUCC----------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------GUGACCU------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------------TACAAAGATGTGACCTCAC---------------------------------------- | 19 | - | - | 15 | |
| ------------------------------------------------------TACAAAGATGTGACCTCACTG-------------------------------------- | 21 | - | - | 12 | |
| ---------------------------------------------------TCCTACAAAGATGTGACCT------------------------------------------- | 19 | 1 | 1 | 9 | |
| ---------------------------------------------------TCCTACAAAGATGTGACCTCACTG-------------------------------------- | 24 | - | - | 10 | |
| ---------------------------------------------------TCCTACAAAGATGTGACCTCAC---------------------------------------- | 22 | 2 | - | 6 | |
| ---------------------------------------------------TCCTACAAAGATGTGACCTC------------------------------------------ | 20 | - | - | 5 | |
| ---------------------------------------------TCAACCTCCTACAAAGATGTGAC--------------------------------------------- | 23 | - | - | 2 | |
| ---------------------------------------------------TCCTACAAAGATGTGACCTCACT--------------------------------------- | 23 | - | - | 2 | |
| ---------------------------------------------------TCCTACAAAGATGTGACCTCA----------------------------------------- | 21 | - | - | 2 | |
| ------------------------------------------------------TACAAAGATGTGACCTCACTGC------------------------------------- | 22 | - | - | 1 | |
| --------------------------------------------------------------TGTGACCTCACTGCTGGTG-------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------ACCTCAACCTCCTACAAAGA--------------------------------------------------- | 20 | - | 1 | - | |
| ---------------------------------------------------------AAAGATGTGACCTCACTGC------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------TCCTACAAAGATGTGACC-------------------------------------------- | 18 | - | - | 1 | |
| ----------------------------------------------CAACCTCCTACAAAGATGT------------------------------------------------ | 19 | - | - | 1 | |
| --------------------------------------------------------CAAAGATGTGACCTCACTG-------------------------------------- | 19 | - | - | 1 | |
| rat | gcccctgatctgaggaaagaagccttgggtgtcagtcagtgaacctcaaccTCCTACAAAGATGTGACCTCACTGctggtgctggagtttttcatgcttctctggacagtgcc | ||||
| ***************************************************************************************************************** | |||||
| rat | ((..(((.((((((((..((((.(((.((..((((.((((((...(((...((.......))..)))..))))))))))..)).)))..))))....))))).)))))).)). | 1.000 -32.50 | |||
| rat | chromosome:20:5563085:5563197:1 | intergenic |
block1094203 [novel_lenNOK_cloningHIGH_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.770 | no | no | 0.41/0.68 | 18/26/0.47 | 0.0 0.0 2.4 | 0.5 0.0 4.3 | 2 3 30 | 0 0 0 | 1 1 6 | 0 0 0 | 40 46 22 | -8 -16 -5 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 2 | nd nd nd | 0.55 0.36 0.22 | 7 7 2 | 58 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------------------------------GCUUCUC----------------------------------------- | 18 | novel | |||||
| seed | --------------------------------------------------------CAUGCUU-------------------------------------------- | 14 | novel | |||||
| seed | -------------------------------------------------------UCAUGCU--------------------------------------------- | 10 | novel | |||||
| seed | -------------------------------------------------------------------GGACAGU--------------------------------- | 4 | novel | |||||
| seed | -----------------------------------------------GGAGUUU----------------------------------------------------- | 3 | novel | |||||
| seed | -----------------------------------------------------------------CUGGACA----------------------------------- | 3 | novel | |||||
| seed | ------------------------------------------------------UUCAUGC---------------------------------------------- | 3 | novel | |||||
| seed | -----------------------------------------GGUGCUG----------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------------------AUGCUUC------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------TCATGCTTCTCTGGACAGT--------------------------------- | 19 | 1 | - | - | 1 | 4 | - | |
| ----------------------------------------------------------TGCTTCTCTGGACAGTGCCC----------------------------- | 20 | 1 | - | - | - | 4 | - | |
| ------------------------------------------------------TTCATGCTTCTCTGGACAGTGCCCTC--------------------------- | 26 | 1 | - | - | - | 3 | - | |
| ------------------------------------------------------------------TGGACAGTGCCCTCCCCTC---------------------- | 19 | - | 1 | 1 | - | 2 | - | |
| ----------------------------------------------------------TGCTTCTCTGGACAGTGCCCTCCCC------------------------ | 25 | 3 | - | - | - | - | - | |
| ------------------------------------------------------TTCATGCTTCTCTGGACAGTG-------------------------------- | 21 | - | 1 | - | - | 2 | - | |
| ----------------------------------------------TGGAGTTTTTCATGCTTCTCTG--------------------------------------- | 22 | - | - | - | - | 3 | - | |
| ----------------------------------------------------------TGCTTCTCTGGACAGTGCC------------------------------ | 19 | - | - | - | - | 3 | - | |
| ----------------------------------------------------------TGCTTCTCTGGACAGTGCCCTCC-------------------------- | 23 | - | - | - | - | 3 | - | |
| -------------------------------------------------------TCATGCTTCTCTGGACAGTGCCC----------------------------- | 23 | - | - | - | - | 2 | - | |
| ----------------------------------------------------------TGCTTCTCTGGACAGTGC------------------------------- | 18 | 2 | - | - | - | - | - | |
| -------------------------------------------------------TCATGCTTCTCTGGACAGTGCCCTCC-------------------------- | 26 | 1 | - | 1 | - | - | - | |
| -------------------------------------------------------TCATGCTTCTCTGGACAGTG-------------------------------- | 20 | 2 | - | - | - | - | - | |
| -----------------------------------------------------TTTCATGCTTCTCTGGACAGTG-------------------------------- | 22 | - | 1 | - | - | - | - | |
| ------------------------------------------------------TTCATGCTTCTCTGGACAGT--------------------------------- | 20 | - | 1 | - | - | - | - | |
| -----------------------------------------------------TTTCATGCTTCTCTGGACAG---------------------------------- | 20 | - | - | - | - | 1 | - | |
| -------------------------------------------------------TCATGCTTCTCTGGACAG---------------------------------- | 18 | - | - | - | - | 1 | - | |
| -----------------------------------------------------TTTCATGCTTCTCTGGAC------------------------------------ | 18 | 1 | - | - | - | - | - | |
| --------------------------------------------------------CATGCTTCTCTGGACAGTGCCCTCC-------------------------- | 25 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------TCTGGACAGTGCCCTCCCCT----------------------- | 20 | - | - | - | - | 1 | - | |
| ----------------------------------------TGGTGCTGGAGTTTTTCAT------------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| ----------------------------------------TGGTGCTGGAGTTTTTCATG----------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| ------------------------------------------------------TTCATGCTTCTCTGGACAGTGCCC----------------------------- | 24 | - | - | - | - | 1 | - | |
| ------------------------------------------------------TTCATGCTTCTCTGGACAG---------------------------------- | 19 | - | 1 | - | - | - | - | |
| -------------------------------------------------------TCATGCTTCTCTGGACAGTGCCCTC--------------------------- | 25 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------TGCTTCTCTGGACAGTGCCCTCCC------------------------- | 24 | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------TCTGGACAGTGCCCTCCCCTC---------------------- | 21 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------TCTGGACAGTGCCCTCCCC------------------------ | 19 | - | 1 | - | - | - | - | |
| ----------------------------------------------------------TGCTTCTCTGGACAGTGCCCT---------------------------- | 21 | - | - | - | - | 1 | - | |
| rat | cagtgaacctcaacctcctacaaagatgtgacctcactgctggtgcTGGAGTTTTTCATGCTTCTCTGGACAGTGCCCTCCCCTCggtggtagcaacaaggcaaact | |||||||
| *********************************************************************************************************** | ||||||||
| rat | .(((...(((....((.((((...((...((...(((((((((....(((((.......))))).)))).)))))...))...)).)))).)).....)))...))) | 0.410 -21.90 | ||||||
| rat | chromosome:20:5563121:5563227:1 | intergenic |
sblock7137 [novel_lenNOK_cloningHIGH_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.561 | no | no | 0.39/0.74 | 18/25/0.41 | 1.4 2.8 1.0 0.0 0.0 2.0 | 2.0 2.4 3.0 0.0 4.1 0.0 | 5 29 2 1 22 8 | 0 0 0 0 0 0 | 2 5 2 1 7 1 | 0 0 0 0 0 0 | 13 39 28 21 11 2 | 15 -15 3 18 21 32 | 5arm 3arm_loop 3arm 3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.27 0.32 0.42 0.50 0.40 0.26 | 2 6 4 4 3 3 | 96 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -----------------------------------------------------------------------------------GACAGAC---------------------------- | 34 | novel | |||||||
| seed | -------------------------------------------------------------GAGUCCA-------------------------------------------------- | 22 | novel | |||||||
| seed | -----------------------------------------------------ACUUCCU---------------------------------------------------------- | 14 | novel | |||||||
| seed | --------------------------------------------------------UCCUUGA------------------------------------------------------- | 4 | novel | |||||||
| seed | ----------------------------------------------------------------------------------------------CUUUAGC----------------- | 4 | novel | |||||||
| seed | --------------------------------------------------------------------------------------------------AGCCGUG------------- | 4 | novel | |||||||
| seed | ----------------CAAACAG----------------------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | -------------------------------------------GGUGCCA-------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -------------------------------------------------------------------AACAGCA-------------------------------------------- | 1 | miR-21* | |||||||
| seed | --------------AUCAAAC------------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------AGCUUGA------------------------------------------------------------------------------------------ | 1 | novel | |||||||
| seed | ------------------------------------------------------------UGAGUCC--------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------------------------------------CCUUGAG------------------------------------------------------ | 1 | novel | |||||||
| seed | ----------------------------------------------GCCAAAU----------------------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------------------------------AUACUUC------------------------------------------------------------ | 1 | novel | |||||||
| seed | --------------------------------------------------------------------------------CCUGACA------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------------------CCAACAG---------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------TGAGTCCAACAGCATCTTG--------------------------------------- | 19 | - | - | - | 1 | - | - | 19 | - | |
| ----------------------------------------------------------------------------------TGACAGACCTTTCTTTAGC----------------- | 19 | 2 | - | 1 | - | - | 3 | 5 | 2 | |
| ----------------------------------------------------TACTTCCTTGAGTCCAACAG---------------------------------------------- | 20 | - | 1 | - | - | - | - | 10 | - | |
| ----------------------------------------------------------------------------------TGACAGACCTTTCTTTAGCCGTGGT----------- | 25 | - | 1 | - | - | 1 | - | 6 | - | |
| -------------------------------------------------------------------------------------------------TAGCCGTGGTTGCCCGGGG-- | 19 | - | - | - | - | - | - | 4 | - | |
| ---------------------------------------------------------------------------------------------TCTTTAGCCGTGGTTGCCCGGGG-- | 23 | - | - | - | - | - | - | 4 | - | |
| ----------------------------------------------------------------------------------TGACAGACCTTTCTTTAGCCG--------------- | 21 | - | - | - | - | - | - | 2 | 1 | |
| ----------------------------------------------------------------------------------TGACAGACCTTTCTTTAG------------------ | 18 | - | - | - | - | - | 1 | 1 | 1 | |
| -------------------------------------------------------TTCCTTGAGTCCAACAGCA-------------------------------------------- | 19 | - | - | - | - | - | - | 3 | - | |
| ----------------------------------------------------------------------------------TGACAGACCTTTCTTTAGCC---------------- | 20 | - | - | - | - | 1 | - | 2 | - | |
| ---------------TCAAACAGCTTGAAAGTCCTG---------------------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------TGGTGCCAAATACTTCCTT--------------------------------------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------------------TGACAGACCTTTCTTTAGCCGTG------------- | 23 | 1 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------TACTTCCTTGAGTCCAACAGCATC------------------------------------------ | 24 | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------------------------TGAGTCCAACAGCATCTT---------------------------------------- | 18 | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------------------------------CAACAGCATCTTGCCCTGACAGAC---------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------TTGAGTCCAACAGCATCTTG--------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| ---------------TCAAACAGCTTGAAAGTCCT----------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| --------------------CAGCTTGAAAGTCCTGGGTCAG---------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------------TGACAGACCTTTCTTTAGCCGTGG------------ | 24 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------CCCTGACAGACCTTTCTT--------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------TCCAACAGCATCTTGCCCTG---------------------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| --------------------------------------------------AATACTTCCTTGAGTCCA-------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------TCCTTGAGTCCAACAGCATCT----------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------TACTTCCTTGAGTCCAACAGCA-------------------------------------------- | 22 | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------TTCCTTGAGTCCAACAGCATCT----------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------------TGACAGACCTTTCTTTAGCCGT-------------- | 22 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------TGCCAAATACTTCCTTGAGTCCAA------------------------------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| -------------CATCAAACAGCTTGAAAGTC------------------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| rat | tgcagggacggcacatcaaacagcttgaaagtcctgggtcagtggtgccaaaTACTTCCTTGAGTCCAACAGCATCTTGcccTGACAGACCTTTCTTTAGCCGTGGTtgcccggggca | |||||||||
| ********************************************************************************************************************** | ||||||||||
| rat | .((.(((.((((.......((.(((.(((((..(((((.(((.(((((.....((((....))))......)))))))))))....))..)))))...))).)).)))))))...)). | 0.680 -32.80 | ||||||||
| rat | chromosome:20:5540454:5540571:1 | intergenic |
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