other hairpins
novel_lenNOK_cloningHIGH_multiarm_5varHIGH_loopOverlap (5 loci)
sblock727 [novel_lenNOK_cloningHIGH_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.237 | no | no | 0.26/0.53 | 18/25/0.61 | 0.0 0.0 2.2 | 0.0 0.5 1.2 | 6 2 24 | 0 0 0 | 2 1 4 | 0 0 0 | 2 29 24 | 31 3 -19 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.47 0.16 0.37 | 5 2 3 | 51 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------AGCCAUC----------------------------------------- | 15 | novel | |||
| seed | ---------------------------------------------------------CAGAGUG----------------------------------- | 9 | novel | |||
| seed | -------------------------------------------------AGAGCCA------------------------------------------- | 8 | novel | |||
| seed | ---UCAGAGU----------------------------------------------------------------------------------------- | 7 | novel | |||
| seed | ------------------------------------------GUGUCUU-------------------------------------------------- | 2 | novel | |||
| seed | -------------------------------------------------------AUCAGAG------------------------------------- | 2 | novel | |||
| seed | ------------------------------AGUGCGG-------------------------------------------------------------- | 2 | novel | |||
| seed | ----CAGAGUU---------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------GCCAUCA---------------------------------------- | 1 | novel | |||
| seed | -CUUCAGA------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------GUCUUAG------------------------------------------------ | 1 | novel | |||
| seed | --------------------------------------------------GAGCCAU------------------------------------------ | 1 | novel | |||
| seed | ----------------------------------------------CUUAGAG---------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S2 | T4S1 | T5S1 | |||
| --------------------------------------------------GAGCCATCAGAGTGAGCATGA---------------------------- | 21 | 3 | - | - | 11 | |
| --------------------------------------------------------TCAGAGTGAGCATGATAAG------------------------ | 19 | - | - | - | 7 | |
| ------------------------------------------------TAGAGCCATCAGAGTGAGCATGA---------------------------- | 23 | - | - | 1 | 6 | |
| --TTCAGAGTTTCTTTTGTTA------------------------------------------------------------------------------ | 19 | - | - | - | 6 | |
| -----------------------------------------TGTGTCTTAGAGCCATCAGAG------------------------------------- | 21 | - | - | - | 2 | |
| ------------------------------------------------------CATCAGAGTGAGCATGATA-------------------------- | 19 | - | - | - | 2 | |
| -----------------------------TAGTGCGGGTTTTGTGTCT--------------------------------------------------- | 19 | - | - | - | 1 | |
| --TTCAGAGTTTCTTTTGTTAAGC--------------------------------------------------------------------------- | 22 | - | - | - | 1 | |
| --------------------------------------------------------TCAGAGTGAGCATGATAAGCCTG-------------------- | 23 | - | - | - | 1 | |
| ---------------------------------------------TCTTAGAGCCATCAGAGTGAG--------------------------------- | 21 | 1 | - | - | - | |
| CCTTCAGAGTTTCTTTTGT-------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| --------------------------------------------------------TCAGAGTGAGCATGATAA------------------------- | 18 | - | - | 1 | - | |
| ------------------------------------------------TAGAGCCATCAGAGTGAGCA------------------------------- | 20 | - | 1 | - | - | |
| ---------------------------------------------------AGCCATCAGAGTGAGCATGA---------------------------- | 20 | - | - | - | 1 | |
| --------------------------------------------------GAGCCATCAGAGTGAGCAT------------------------------ | 19 | - | - | - | 1 | |
| ---TCAGAGTTTCTTTTGTTAAG---------------------------------------------------------------------------- | 20 | 1 | - | - | - | |
| -------------------------------------------------AGAGCCATCAGAGTGAGCATGA---------------------------- | 22 | - | - | - | 1 | |
| -------------------------------------------TGTCTTAGAGCCATCAGAGTGAGCA------------------------------- | 25 | - | - | - | 1 | |
| -----------------------------TAGTGCGGGTTTTGTGTCTT-------------------------------------------------- | 20 | - | - | - | 1 | |
| rat | ccTTCAGAGTTTCTTTTGTTAagcttccatagtgcgggttttgtgtctTAGAGCCATCAGAGTGAGCATGATAAGcctgtgctgagcagcaccaggaac | |||||
| *************************************************************************************************** | ||||||
| rat | ........((((((..((((..((((....((..(((((((.(((((((.((....)).)))...))))...)))))))..))))))))))..)))))) | 0.980 -26.70 | ||||
| rat | chromosome:1:129003595:129003693:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK (5 loci)
sblock4210 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.47/0.58 | 18/23/0.68 | 0.0 0.0 | 0.7 1.0 | 6 36 | 0 0 | 2 4 | 0 0 | 14 13 | 5 10 | 5arm 3arm | 1 1 | nd nd | 0.10 0.27 | 2 3 | 76 | 4 | 0 | 2 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------GUACCAC--------------------------- | 63 | novel | |||
| seed | ---------------CUGUGUU------------------------------------------------------------------ | 9 | novel | |||
| seed | -------------------------------------------------------UACCACU-------------------------- | 3 | novel | |||
| seed | -----------------------------------------------------UGUACCA---------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T2S2 | T4S2 | |||
| -----------------------------------------------------TGTACCACTGCCAAACCAGCCA------------- | 22 | - | 8 | 19 | - | |
| -----------------------------------------------------TGTACCACTGCCAAACCA----------------- | 18 | 1 | 9 | 4 | - | |
| -----------------------------------------------------TGTACCACTGCCAAACCAGCCAT------------ | 23 | - | 5 | 3 | 1 | |
| -----------------------------------------------------TGTACCACTGCCAAACCAG---------------- | 19 | - | 5 | 1 | - | |
| --------------ACTGTGTTGGTAGTGGTCTG------------------------------------------------------ | 20 | - | 4 | 1 | - | |
| -----------------------------------------------------TGTACCACTGCCAAACCAGCC-------------- | 21 | - | - | 4 | - | |
| -----------------------------------------------------TGTACCACTGCCAAACCAGC--------------- | 20 | - | 2 | 1 | - | |
| --------------ACTGTGTTGGTAGTGGTC-------------------------------------------------------- | 18 | - | - | 2 | - | |
| ------------------------------------------------------GTACCACTGCCAAACCAGCCAT------------ | 22 | - | 1 | - | - | |
| ----------------------------------------------------CTGTACCACTGCCAAACCAGCCA------------- | 23 | - | - | 1 | - | |
| --------------ACTGTGTTGGTAGTGGTCTGGT---------------------------------------------------- | 22 | - | 1 | - | - | |
| --------------ACTGTGTTGGTAGTGGTCT------------------------------------------------------- | 19 | - | 1 | - | - | |
| ------------------------------------------------------GTACCACTGCCAAACCAGC--------------- | 19 | - | 1 | - | - | |
| ------------------------------------------------------GTACCACTGCCAAACCAGCCA------------- | 21 | - | - | 1 | - | |
| rat | ggactgttggtgtgactgtgttggtagtggtctggtgtcaccagaggccggacTGTACCACTGCCAAACCAGCCAtaccaatagtctc | |||||
| **************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004174 ENSRNOG00000003119 Gc | |||||
| rat | ((((((((((((((.(((..((((((((((((((((.((....)).)))))).....))))))))))..))).)))))))))))))). | 1.000 -52.30 | ||||
| rat | chromosome:14:20195359:20195446:1 | Same_strand|Intronic_coding|ENSRNOT00000004174|ENSRNOG00000003119 ## ENSRNOG00000003119|protein_coding|Gc|Vitamin D-binding protein precursor (DBP) (Group-specific component) (Gc-globulin) (VDB). [Source:UniProtKB/Swiss-Prot;Acc:P04276] |
sblock645 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.44/0.53 | 18/23/0.65 | 0.0 0.0 0.0 | 0.0 0.0 1.4 | 1 1 882 | 0 0 0 | 1 1 5 | 0 0 0 | 26 32 23 | 11 0 7 | 5arm 3arm 3arm | 4 8 9 | nd nd nd | 0.22 0.10 0.15 | 2 1 1 | 1083 | 5 | -3 | 2 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------------------GUAUAAC------------------------------------- | 1066 | novel | ||||
| seed | -----------------------------------------------------------------------UAACCAA---------------------------------- | 8 | novel | ||||
| seed | ---------------------------------------------------------------------UAUAACC------------------------------------ | 6 | novel | ||||
| seed | ------------------------------------------------------------------GGGUAUA--------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------GUCCUGG-------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------GUCAGGC------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T5S2 | |||
| -------------------------------------------------------------------GGTATAACCAAAGCCCGACTGA----------------------- | 22 | 139 | 288 | - | 1 | - | |
| -------------------------------------------------------------------GGTATAACCAAAGCCCGAC-------------------------- | 19 | 193 | 131 | 1 | - | 1 | |
| -------------------------------------------------------------------GGTATAACCAAAGCCCGACT------------------------- | 20 | 131 | 42 | - | - | - | |
| -------------------------------------------------------------------GGTATAACCAAAGCCCGACTG------------------------ | 21 | 59 | 27 | - | - | - | |
| -------------------------------------------------------------------GGTATAACCAAAGCCCGA--------------------------- | 18 | 17 | 19 | - | - | - | |
| -------------------------------------------------------------------GGTATAACCAAAGCCCGACTGAA---------------------- | 23 | 7 | 10 | - | - | - | |
| ----------------------------------------------------------------------ATAACCAAAGCCCGACTGA----------------------- | 19 | 1 | 4 | - | - | - | |
| --------------------------------------------------------------------GTATAACCAAAGCCCGACTGA----------------------- | 21 | 2 | 1 | - | - | - | |
| ----------------------------------------------------------------------ATAACCAAAGCCCGACTG------------------------ | 18 | 2 | 1 | - | - | - | |
| --------------------------------------------------------------------GTATAACCAAAGCCCGAC-------------------------- | 18 | 2 | 1 | - | - | - | |
| ------------------------------------------------------------GGTCCTGGGTATAACCAAAG-------------------------------- | 20 | - | 1 | - | - | - | |
| -----------------------------------------------------------------TGGGTATAACCAAAGCCCGAC-------------------------- | 21 | - | 1 | - | - | - | |
| --------------------------AGTCAGGCTACTGGTTAT-------------------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| rat | atttgtctgcacagagacatctgatcagtcaggctactggttattttccaggacttatccggtcctgGGTATAACCAAAGCCCGACTGAatagtgttaaatgaaagaagagt | ||||||
| **************************************************************************************************************** | |||||||
| rat | ((((.(((...((..((((.(((.((((((.((((..(((((((..(((((((((.....))))))))).))))))).)))).)))))).)))))))...))..))).)))) | 0.960 -46.20 | |||||
| rat | chromosome:1:115313661:115313772:-1 | intergenic |
sblock6922 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.57/0.67 | 18/25/0.62 | 0.0 0.3 | 0.4 0.6 | 17 23 | 0 0 | 6 6 | 0 0 | 23 22 | 5 5 | 5arm 3arm | 1 1 | nd nd | 0.25 0.19 | 2 2 | 55 | 7 | 0 | 2 |
| reads | miRBase family seed | ||||||||
| seed | ------------------------UGUAGAC--------------------------------------------------------------------------- | 25 | novel | ||||||
| seed | ---------------------------------------------------------------ACCUCCC------------------------------------ | 18 | novel | ||||||
| seed | ----------------------------------------------------------------CCUCCCU----------------------------------- | 12 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| -----------------------CTGTAGACAGCACTGGGGC---------------------------------------------------------------- | 19 | 5 | 2 | - | 2 | 2 | 1 | 1 | |
| --------------------------------------------------------------CACCTCCCTGCCTGTCTCATC----------------------- | 21 | 3 | 4 | - | - | - | - | - | |
| -----------------------CTGTAGACAGCACTGGGGCT--------------------------------------------------------------- | 20 | 4 | 1 | - | - | - | - | 2 | |
| --------------------------------------------------------------CACCTCCCTGCCTGTCTCATCA---------------------- | 22 | 3 | 3 | - | - | - | - | - | |
| ---------------------------------------------------------------ACCTCCCTGCCTGTCTCATCA---------------------- | 21 | - | 1 | - | 2 | - | - | 2 | |
| ---------------------------------------------------------------ACCTCCCTGCCTGTCTCATC----------------------- | 20 | - | 1 | - | - | - | 2 | 2 | |
| --------------------------------------------------------------CACCTCCCTGCCTGTCTCA------------------------- | 19 | 2 | 1 | 1 | - | - | - | - | |
| ---------------------------------------------------------------ACCTCCCTGCCTGTCTCA------------------------- | 18 | 1 | 1 | - | - | - | - | - | |
| -----------------------CTGTAGACAGCACTGGGGCTG-------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | 1 | |
| -----------------------CTGTAGACAGCACTGGGGCTGGAG----------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------CACCTCCCTGCCTGTCTC-------------------------- | 18 | - | - | - | - | - | - | 1 | |
| -----------------------CTGTAGACAGCACTGGGGCTGGAGA---------------------------------------------------------- | 25 | 1 | - | - | - | - | - | - | |
| -----------------------CTGTAGACAGCACTGGGGCTGGA------------------------------------------------------------ | 23 | - | - | - | - | 1 | - | - | |
| rat | ggctcagctggagcaagctgatgCTGTAGACAGCACTGGGGCTggagatgcgcatcctttccCACCTCCCTGCCTGTCTCATCAttggcttgttcacatggggtca | ||||||||
| ********************************************************************************************************** | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000000689 ENSRNOG00000000568 Slc29a3 | ||||||||
| rat | (((((...((((((((((..(((.((.((((((((..((((..(((((.........)))))..))))..))).))))))).)))..)))))))).))..))))). | 1.000 -47.30 | |||||||
| rat | chromosome:20:28056627:28056732:-1 | Same_strand|Intronic_coding|ENSRNOT00000000689|ENSRNOG00000000568 ## ENSRNOG00000000568|protein_coding|Slc29a3|Equilibrative nucleoside transporter 3 (Solute carrier family 29 member 3). [Source:UniProtKB/Swiss-Prot;Acc:Q80WK7] |
sblock788 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.47/0.62 | 18/23/0.02 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 861 | 0 0 0 | 1 1 10 | 0 0 0 | 10 42 15 | 18 -9 19 | 5arm 3arm_loop 3arm | 1 1 2 | nd nd nd | 0.22 0.53 0.33 | 2 8 3 | 1006 | 10 | -4 | -5 |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------------------------------------------------GCUGGUG------------------------- | 1004 | miR-138 | |||||||||
| seed | ------------------------------------------------UUUUGUU----------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------UUCCCAA------------------------------------------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------------AGCTGGTGTTGTAGGCTG--------------- | 18 | 262 | 599 | 1 | 2 | 15 | 5 | 1 | 2 | 4 | 2 | |
| ---------------------------------------------------------------------------AGCTGGTGTTGTAGGCTGG-------------- | 19 | 34 | 57 | - | - | - | 1 | 1 | - | 1 | - | |
| ---------------------------------------------------------------------------AGCTGGTGTTGTAGGCTGGG------------- | 20 | 2 | 10 | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------------------AGCTGGTGTTGTAGGCTGGGG------------ | 21 | 3 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------AGCTGGTGTTGTAGGCTGGGGAG---------- | 23 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------TTTCCCAACCTCCATCCC-------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------TTTTTGTTCCCTGGTTCCC------------------------------------------ | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | cttccgctcctttcccaacctccatcccggaactccctgggctgggctttttgttccctggttcccaggcagtgcAGCTGGTGTTGTAGGCTGgggagggggcggagg | |||||||||||
| ************************************************************************************************************ | ||||||||||||
| rat | (((((((((((((((((.(((.((..((((.(((.(((((((((((..........)))))..)))))).)))....))))...)).))).))))))))))))))))) | 0.980 -59.20 | ||||||||||
| rat | chromosome:1:134310312:134310419:-1 | intergenic |
sblock7785 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.39/0.50 | 18/22/0.07 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.2 0.0 | 1 1 133 2 | 0 0 0 0 | 1 1 10 2 | 0 0 0 0 | 22 39 29 14 | 17 1 9 25 | 5arm 5arm 3arm 3arm | 1 1 2 2 | nd nd nd nd | 0.32 0.33 0.42 0.28 | 3 2 3 2 | 180 | 10 | 7 | 8 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------------------------------AGGAGCU---------------------------------------- | 167 | miR-28/708 | |||||||||
| seed | ---------------------------------------------------------------------UAAGGAG------------------------------------------ | 9 | novel | |||||||||
| seed | ---------------------------------------------------------------------------------------AGGAGUU------------------------ | 2 | novel | |||||||||
| seed | ----------------------------------------GGAGCUC----------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------UGGAGCU---------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------AAGGAGCTCACAGTCTAA------------------------------ | 18 | 10 | 5 | 10 | 14 | 14 | 11 | 10 | 18 | 13 | 10 | |
| ----------------------------------------------------------------------AAGGAGCTCACAGTCTAAG----------------------------- | 19 | 2 | 2 | 2 | 8 | 7 | 2 | 3 | 8 | 2 | 5 | |
| --------------------------------------------------------------------CTAAGGAGCTCACAGTCT-------------------------------- | 18 | - | 2 | 1 | 1 | 1 | 1 | 1 | - | - | 1 | |
| ----------------------------------------------------------------------AAGGAGCTCACAGTCTAAGGA--------------------------- | 21 | - | 1 | - | 2 | 1 | - | 1 | - | 1 | - | |
| ----------------------------------------------------------------------AAGGAGCTCACAGTCTAAGG---------------------------- | 20 | - | - | 1 | - | - | - | 1 | - | 2 | - | |
| --------------------------------------------------------------------------------------AAGGAGTTCACAGTCTAT-------------- | 18 | - | - | 1 | - | 1 | - | - | - | - | - | |
| ----------------------ATGGAGCTCACAGTCTATG----------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------------AAGGAGCTCACAGTCTAAGGAG-------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | - | |
| --------------------------------------------------------------------CTAAGGAGCTCACAGTCTAA------------------------------ | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------TGGAGCTCACAGTCTAAG------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | cagtctaaggagctcatagtttatggagctcacagtctatggagctcacagtctaagaagctcacagtctAAGGAGCTCACAGTCTAAGgagttcacagtctatggagctcatagtct | |||||||||||
| ********************************************************************************************************************** | ||||||||||||
| rat | .((.(((..((((((((((....((((((((..((.((...((((((..((.((..((...))..)).))...))))))..)).))...)))))).))..))))).))))).))).)) | 1.000 -39.20 | ||||||||||
| rat | chromosome:3:159598487:159598604:-1 | intergenic ## {Repeats: trf 65 83 0 class=trf,trf 18 36 0 class=trf,trf 81 100 0 class=trf,trf 30 54 0 class=trf} |
novel_lenNOK_cloningHIGH_multiarm_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH (5 loci)
block844365 [novel_lenNOK_cloningHIGH_multiarm_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.21/0.45 | 18/24/0.11 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 73 7 | 0 0 0 | 1 5 3 | 0 0 0 | 26 25 10 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.84 | 6 11 13 | 118 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------ACAACAG------------------------------------ | 88 | novel | ||||
| seed | ---------------------------------------------------GAAAUAU---------------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------AAGCCUA--------------------- | 5 | novel | ||||
| seed | -------------------------------------UCAAAUA------------------------------------------ | 4 | novel | ||||
| seed | ---------------------------------AGAGUCA---------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------CAAAUAC----------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------AUACAAC-------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------AGUCAAA-------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------AUAAGCC----------------------- | 1 | novel | ||||
| seed | ---------------------------------------------AACAGUG---------------------------------- | 1 | novel | ||||
| seed | ---------------------------GACAACA---------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------CAGAGUC----------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------CAACAGU----------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GUCAAAU------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------GAGUCAA--------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------TACAACAGTGAAATATAAG------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------------------TGAAATATAAGCCTACTCCTAAGA------------ | 24 | - | - | - | - | 5 | |
| ------------------------------------GTCAAATACAACAGTGAAA------------------------------- | 19 | - | - | - | - | 4 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATC---------- | 19 | 1 | - | - | - | 2 | |
| ----------------------------------------AATACAACAGTGAAATATA--------------------------- | 19 | - | - | - | - | 2 | |
| ------------------------------------------TACAACAGTGAAATATAA-------------------------- | 18 | 1 | - | - | - | 1 | |
| ----------------------------------GAGTCAAATACAACAGTGA--------------------------------- | 19 | - | - | - | 1 | 1 | |
| -------------------------------------TCAAATACAACAGTGAAAT------------------------------ | 19 | - | - | - | - | 2 | |
| --------------------------------CAGAGTCAAATACAACAGTGAAA------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------------ACAGAGTCAAATACAACAGTGAAA------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------------ACAACAGTGAAATATAAGC------------------------ | 19 | - | - | - | - | 1 | |
| ------------------------------------------TACAACAGTGAAATATAAGCC----------------------- | 21 | - | - | - | - | 1 | |
| --------------------------------------------CAACAGTGAAATATAAGCCT---------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCC--------- | 20 | - | - | - | 1 | - | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCCA-------- | 21 | 1 | - | - | - | - | |
| --------------------------------------------------TGAAATATAAGCCTACTC------------------ | 18 | 1 | - | - | - | - | |
| --------------------------TGACAACAGAGTCAAATAC----------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------------AGTCAAATACAACAGTGAA-------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------TATAAGCCTACTCCTAAGA------------ | 19 | - | - | - | - | 1 | |
| ---------------------------------AGAGTCAAATACAACAGTGA--------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------------------CAGAGTCAAATACAACAGTGA--------------------------------- | 21 | - | - | - | - | 1 | |
| rat | tacaacctgtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatacgttgt | ||||||
| ************************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||||||
| rat | .(((((.(((..(((..(((((((((((((......))))..)))))))))....................)))...))).))))) | 0.400 -18.45 | |||||
| rat | chromosome:1:50180147:50180232:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
block844885 [novel_lenNOK_cloningHIGH_multiarm_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.21/0.45 | 18/24/0.11 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 73 7 | 0 0 0 | 1 5 3 | 0 0 0 | 26 25 10 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.84 | 6 11 13 | 118 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------ACAACAG------------------------------------ | 88 | novel | ||||
| seed | ---------------------------------------------------GAAAUAU---------------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------AAGCCUA--------------------- | 5 | novel | ||||
| seed | -------------------------------------UCAAAUA------------------------------------------ | 4 | novel | ||||
| seed | ---------------------------------AGAGUCA---------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------CAAAUAC----------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------AUACAAC-------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------AGUCAAA-------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------AUAAGCC----------------------- | 1 | novel | ||||
| seed | ---------------------------------------------AACAGUG---------------------------------- | 1 | novel | ||||
| seed | ---------------------------GACAACA---------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------CAGAGUC----------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------CAACAGU----------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GUCAAAU------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------GAGUCAA--------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------TACAACAGTGAAATATAAG------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------------------TGAAATATAAGCCTACTCCTAAGA------------ | 24 | - | - | - | - | 5 | |
| ------------------------------------GTCAAATACAACAGTGAAA------------------------------- | 19 | - | - | - | - | 4 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATC---------- | 19 | 1 | - | - | - | 2 | |
| ----------------------------------------AATACAACAGTGAAATATA--------------------------- | 19 | - | - | - | - | 2 | |
| ------------------------------------------TACAACAGTGAAATATAA-------------------------- | 18 | 1 | - | - | - | 1 | |
| ----------------------------------GAGTCAAATACAACAGTGA--------------------------------- | 19 | - | - | - | 1 | 1 | |
| -------------------------------------TCAAATACAACAGTGAAAT------------------------------ | 19 | - | - | - | - | 2 | |
| --------------------------------CAGAGTCAAATACAACAGTGAAA------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------------ACAGAGTCAAATACAACAGTGAAA------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------------ACAACAGTGAAATATAAGC------------------------ | 19 | - | - | - | - | 1 | |
| ------------------------------------------TACAACAGTGAAATATAAGCC----------------------- | 21 | - | - | - | - | 1 | |
| --------------------------------------------CAACAGTGAAATATAAGCCT---------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCC--------- | 20 | - | - | - | 1 | - | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCCA-------- | 21 | 1 | - | - | - | - | |
| --------------------------------------------------TGAAATATAAGCCTACTC------------------ | 18 | 1 | - | - | - | - | |
| --------------------------TGACAACAGAGTCAAATAC----------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------------AGTCAAATACAACAGTGAA-------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------TATAAGCCTACTCCTAAGA------------ | 19 | - | - | - | - | 1 | |
| ---------------------------------AGAGTCAAATACAACAGTGA--------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------------------CAGAGTCAAATACAACAGTGA--------------------------------- | 21 | - | - | - | - | 1 | |
| rat | tacaacctgtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatacgttgt | ||||||
| ************************************************************************************** | |||||||
| rat | .(((((.(((..(((..(((((((((((((......))))..)))))))))....................)))...))).))))) | 0.400 -18.45 | |||||
| rat | chromosome:1:50355849:50355934:-1 | intergenic |
block962712 [novel_lenNOK_cloningHIGH_multiarm_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.21/0.45 | 18/24/0.11 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 73 7 | 0 0 0 | 1 5 3 | 0 0 0 | 26 25 10 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.84 | 6 11 13 | 118 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------ACAACAG------------------------------------ | 88 | novel | ||||
| seed | ---------------------------------------------------GAAAUAU---------------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------AAGCCUA--------------------- | 5 | novel | ||||
| seed | -------------------------------------UCAAAUA------------------------------------------ | 4 | novel | ||||
| seed | ---------------------------------AGAGUCA---------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------CAAAUAC----------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------AUACAAC-------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------AGUCAAA-------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------AUAAGCC----------------------- | 1 | novel | ||||
| seed | ---------------------------------------------AACAGUG---------------------------------- | 1 | novel | ||||
| seed | ---------------------------GACAACA---------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------CAGAGUC----------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------CAACAGU----------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GUCAAAU------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------GAGUCAA--------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------TACAACAGTGAAATATAAG------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------------------TGAAATATAAGCCTACTCCTAAGA------------ | 24 | - | - | - | - | 5 | |
| ------------------------------------GTCAAATACAACAGTGAAA------------------------------- | 19 | - | - | - | - | 4 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATC---------- | 19 | 1 | - | - | - | 2 | |
| ----------------------------------------AATACAACAGTGAAATATA--------------------------- | 19 | - | - | - | - | 2 | |
| ------------------------------------------TACAACAGTGAAATATAA-------------------------- | 18 | 1 | - | - | - | 1 | |
| ----------------------------------GAGTCAAATACAACAGTGA--------------------------------- | 19 | - | - | - | 1 | 1 | |
| -------------------------------------TCAAATACAACAGTGAAAT------------------------------ | 19 | - | - | - | - | 2 | |
| --------------------------------CAGAGTCAAATACAACAGTGAAA------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------------ACAGAGTCAAATACAACAGTGAAA------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------------ACAACAGTGAAATATAAGC------------------------ | 19 | - | - | - | - | 1 | |
| ------------------------------------------TACAACAGTGAAATATAAGCC----------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCC--------- | 20 | - | - | - | 1 | - | |
| --------------------------------------------CAACAGTGAAATATAAGCCT---------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCCA-------- | 21 | 1 | - | - | - | - | |
| --------------------------------------------------TGAAATATAAGCCTACTC------------------ | 18 | 1 | - | - | - | - | |
| --------------------------TGACAACAGAGTCAAATAC----------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------------AGTCAAATACAACAGTGAA-------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------TATAAGCCTACTCCTAAGA------------ | 19 | - | - | - | - | 1 | |
| ---------------------------------AGAGTCAAATACAACAGTGA--------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------------------CAGAGTCAAATACAACAGTGA--------------------------------- | 21 | - | - | - | - | 1 | |
| rat | tacaacctgtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatacgttgt | ||||||
| ************************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | .(((((.(((..(((..(((((((((((((......))))..)))))))))....................)))...))).))))) | 0.400 -18.45 | |||||
| rat | chromosome:1:51537077:51537162:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block962761 [novel_lenNOK_cloningHIGH_multiarm_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.21/0.45 | 18/24/0.11 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 73 7 | 0 0 0 | 1 5 3 | 0 0 0 | 26 25 10 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.84 | 6 11 13 | 118 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------ACAACAG------------------------------------ | 88 | novel | ||||
| seed | ---------------------------------------------------GAAAUAU---------------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------AAGCCUA--------------------- | 5 | novel | ||||
| seed | -------------------------------------UCAAAUA------------------------------------------ | 4 | novel | ||||
| seed | ---------------------------------AGAGUCA---------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------CAAAUAC----------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------AUACAAC-------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------AGUCAAA-------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------AUAAGCC----------------------- | 1 | novel | ||||
| seed | ---------------------------------------------AACAGUG---------------------------------- | 1 | novel | ||||
| seed | ---------------------------GACAACA---------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------CAGAGUC----------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------CAACAGU----------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GUCAAAU------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------GAGUCAA--------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------TACAACAGTGAAATATAAG------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------------------TGAAATATAAGCCTACTCCTAAGA------------ | 24 | - | - | - | - | 5 | |
| ------------------------------------GTCAAATACAACAGTGAAA------------------------------- | 19 | - | - | - | - | 4 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATC---------- | 19 | 1 | - | - | - | 2 | |
| ----------------------------------------AATACAACAGTGAAATATA--------------------------- | 19 | - | - | - | - | 2 | |
| ------------------------------------------TACAACAGTGAAATATAA-------------------------- | 18 | 1 | - | - | - | 1 | |
| ----------------------------------GAGTCAAATACAACAGTGA--------------------------------- | 19 | - | - | - | 1 | 1 | |
| -------------------------------------TCAAATACAACAGTGAAAT------------------------------ | 19 | - | - | - | - | 2 | |
| --------------------------------CAGAGTCAAATACAACAGTGAAA------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------------ACAGAGTCAAATACAACAGTGAAA------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------------ACAACAGTGAAATATAAGC------------------------ | 19 | - | - | - | - | 1 | |
| ------------------------------------------TACAACAGTGAAATATAAGCC----------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCC--------- | 20 | - | - | - | 1 | - | |
| --------------------------------------------CAACAGTGAAATATAAGCCT---------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCCA-------- | 21 | 1 | - | - | - | - | |
| --------------------------------------------------TGAAATATAAGCCTACTC------------------ | 18 | 1 | - | - | - | - | |
| --------------------------TGACAACAGAGTCAAATAC----------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------------AGTCAAATACAACAGTGAA-------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------TATAAGCCTACTCCTAAGA------------ | 19 | - | - | - | - | 1 | |
| ---------------------------------AGAGTCAAATACAACAGTGA--------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------------------CAGAGTCAAATACAACAGTGA--------------------------------- | 21 | - | - | - | - | 1 | |
| rat | tacaacctgtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatacgttgt | ||||||
| ************************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | .(((((.(((..(((..(((((((((((((......))))..)))))))))....................)))...))).))))) | 0.400 -18.45 | |||||
| rat | chromosome:1:51538963:51539048:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
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