other hairpins
novel_lenNOK_cloningOK_5varHIGH_loopOverlap_randfoldOK (5 loci)
block712786 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.42/0.50 | 19/23/0.69 | 2.6 | 2.4 | 14 | 0 | 2 | 0 | 34 | -20 | 3arm_loop | 1 | nd | 0.13 | 2 | 16 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------CAGAGAG------------------------------------------------- | 6 | novel | |
| seed | -----------------------------------------------------------CCCUUCA------------------------------------------------------ | 6 | novel | |
| seed | ---------------------------------------------------------------UCAGAGA-------------------------------------------------- | 4 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------------------------------TCCCTTCAGAGAGTCAAGCACA---------------------------------------- | 22 | - | 6 | |
| ---------------------------------------------------------------TCAGAGAGTCAAGCACAATTCCT---------------------------------- | 23 | - | 5 | |
| --------------------------------------------------------------TTCAGAGAGTCAAGCACAA--------------------------------------- | 19 | 1 | 3 | |
| ---------------------------------------------------------------TCAGAGAGTCAAGCACAAT-------------------------------------- | 19 | - | 1 | |
| rat | acgttgcctgctctgtcttcctggcttgtcattgaggtggacaaattgtgcttgactcTCCCTTCAGAGAGTCAAGCACAATTCCTacctaatcctctgagcaacagagcaaaagcaatg | |||
| ************************************************************************************************************************ | ||||
| rat | .((((((.((((((((.......((((.......((((((...(((((((((((((((((......))))))))))))))))).))))))........)))).))))))))...)))))) | 0.950 -55.16 | ||
| rat | chromosome:18:63559388:63559507:-1 | intergenic |
novel_lenNOK_cloningOK_Multihit_loopOverlap_nonpairedHIGH (5 loci)
block846509 [novel_lenNOK_cloningOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.428 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 16 | -3 | 3arm_loop | 40 | nd | 0.33 | 2 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------CAGUGCA-------------------------- | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| --------------------------------------TCAGTGCATGACAAGGTT---------------- | 18 | 4 | 1 | 4 | 3 | |
| rat | gcagctcagggagtgtgcttagtatgtgccccattgctTCAGTGCATGACAAGGTTactctgcaggagtagc | |||||
| ************************************************************************ | ||||||
| ---------------------------------------------------------------------------------- | ENSRNOT00000044862 ENSRNOG00000032704 | |||||
| rat | ((.((((..((((((..(((..(((((((............)))))))..)))..))))))....)))).)) | 0.840 -19.50 | ||||
| rat | chromosome:1:51330255:51330326:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000044862|ENSRNOG00000032704 ## ENSRNOG00000032704|protein_coding|| |
block1993332 [novel_lenNOK_cloningOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.50/0.56 | 18/20/0.07 | 0.3 | 0.2 | 10 | 0 | 2 | 0 | 5 | -5 | 3arm_loop | 15 | nd | 0.39 | 3 | 14 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------CACAGUC---------------- | 9 | novel | |
| seed | --------------------------------ACAGUCU--------------- | 4 | novel | |
| seed | ---------------------------------CAGUCUA-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------------------ACACAGTCTACAGCCATGG----- | 19 | 1 | 5 | |
| -------------------------------CACAGTCTACAGCCATGG----- | 18 | 3 | 1 | |
| ------------------------------ACACAGTCTACAGCCATG------ | 18 | 2 | 1 | |
| --------------------------------ACAGTCTACAGCCATGGATC-- | 20 | - | 1 | |
| rat | tggatccacacagtctaaagccatggatccACACAGTCTACAGCCATGGatcca | |||
| ****************************************************** | ||||
| rat | .(((((((...........((..(((((.......)))))..))..))))))). | 0.500 -12.72 | ||
| rat | chromosome:6:6255623:6255676:1 | intergenic ## {Repeats: trf 1162 1184 0 class=trf} |
block1993340 [novel_lenNOK_cloningOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.50/0.56 | 18/20/0.07 | 0.3 | 0.2 | 10 | 0 | 2 | 0 | 5 | -5 | 3arm_loop | 15 | nd | 0.39 | 3 | 14 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------CACAGUC---------------- | 9 | novel | |
| seed | --------------------------------ACAGUCU--------------- | 4 | novel | |
| seed | ---------------------------------CAGUCUA-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------------------ACACAGTCTACAGCCATGG----- | 19 | 1 | 5 | |
| -------------------------------CACAGTCTACAGCCATGG----- | 18 | 3 | 1 | |
| ------------------------------ACACAGTCTACAGCCATG------ | 18 | 2 | 1 | |
| --------------------------------ACAGTCTACAGCCATGGATC-- | 20 | - | 1 | |
| rat | tggatccacacagtctaaagccatggatccACACAGTCTACAGCCATGGatcca | |||
| ****************************************************** | ||||
| rat | .(((((((...........((..(((((.......)))))..))..))))))). | 0.500 -12.72 | ||
| rat | chromosome:6:6256134:6256187:1 | intergenic ## {Repeats: trf 651 673 0 class=trf} |
block1993341 [novel_lenNOK_cloningOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.50/0.56 | 18/20/0.07 | 0.3 | 0.2 | 10 | 0 | 2 | 0 | 5 | -5 | 3arm_loop | 15 | nd | 0.39 | 3 | 14 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------CACAGUC---------------- | 9 | novel | |
| seed | --------------------------------ACAGUCU--------------- | 4 | novel | |
| seed | ---------------------------------CAGUCUA-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------------------ACACAGTCTACAGCCATGG----- | 19 | 1 | 5 | |
| -------------------------------CACAGTCTACAGCCATGG----- | 18 | 3 | 1 | |
| ------------------------------ACACAGTCTACAGCCATG------ | 18 | 2 | 1 | |
| --------------------------------ACAGTCTACAGCCATGGATC-- | 20 | - | 1 | |
| rat | tggatccacacagtctaaagccatggatccACACAGTCTACAGCCATGGatcca | |||
| ****************************************************** | ||||
| rat | .(((((((...........((..(((((.......)))))..))..))))))). | 0.500 -12.72 | ||
| rat | chromosome:6:6256341:6256394:1 | intergenic ## {Repeats: trf 444 466 0 class=trf} |
block1993342 [novel_lenNOK_cloningOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.50/0.56 | 18/20/0.07 | 0.3 | 0.2 | 10 | 0 | 2 | 0 | 5 | -5 | 3arm_loop | 15 | nd | 0.39 | 3 | 14 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------CACAGUC---------------- | 9 | novel | |
| seed | --------------------------------ACAGUCU--------------- | 4 | novel | |
| seed | ---------------------------------CAGUCUA-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------------------ACACAGTCTACAGCCATGG----- | 19 | 1 | 5 | |
| -------------------------------CACAGTCTACAGCCATGG----- | 18 | 3 | 1 | |
| ------------------------------ACACAGTCTACAGCCATG------ | 18 | 2 | 1 | |
| --------------------------------ACAGTCTACAGCCATGGATC-- | 20 | - | 1 | |
| rat | tggatccacacagtctaaagccatggatccACACAGTCTACAGCCATGGatcca | |||
| ****************************************************** | ||||
| rat | .(((((((...........((..(((((.......)))))..))..))))))). | 0.500 -12.72 | ||
| rat | chromosome:6:6256341:6256394:1 | intergenic ## {Repeats: trf 421 443 0 class=trf} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH (5 loci)
sblock11742 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.059 | no | no | 0.30/0.50 | 18/22/0.40 | 0.3 0.0 0.0 2.5 | 1.1 0.0 0.0 0.8 | 7 1 1 6 | 0 0 0 0 | 4 1 1 4 | 0 0 0 0 | 18 32 42 0 | 13 3 -8 18 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.44 0.33 0.32 0.27 | 5 4 4 4 | 15 | 6 | 11 | 12 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------------------------------------CCACUGU------------- | 5 | novel | |||||
| seed | --------------------ACAUUUA------------------------------------------------------------------------ | 5 | novel | |||||
| seed | -------------------------------------------CAGAGAG------------------------------------------------- | 1 | novel | |||||
| seed | -------------------GACAUUU------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------CAUUUAG----------------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------------------CUACCAC---------------- | 1 | novel | |||||
| seed | ---------------------------------CCUGUUC----------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T5S2 | |||
| ------------------------------------------------------------------------------ACCACTGTTTTCAAGAAGG-- | 19 | - | - | - | 1 | - | 1 | |
| ------------------------------------------------------------------------------ACCACTGTTTTCAAGAAGGCC | 21 | 1 | - | - | 1 | - | - | |
| -------------------GACATTTAGTATATCCTGT------------------------------------------------------------- | 19 | 2 | - | - | - | - | - | |
| --------------------ACATTTAGTATATCCTGTTC----------------------------------------------------------- | 20 | 1 | - | - | - | - | - | |
| -------------------GACATTTAGTATATCCTGTT------------------------------------------------------------ | 20 | - | 1 | - | - | - | - | |
| --------------------------------TCCTGTTCTCACAGAGAG------------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------------ACCACTGTTTTCAAGAAG--- | 18 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------------ACTACCACTGTTTTCAAGAAGG-- | 22 | - | - | - | 1 | - | - | |
| -------------------GACATTTAGTATATCCTG-------------------------------------------------------------- | 18 | - | - | 1 | - | - | - | |
| ------------------------------------------ACAGAGAGAATAGTAGTTC-------------------------------------- | 19 | - | - | - | 1 | - | - | |
| ------------------CGACATTTAGTATATCCT--------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| -------------------GACATTTAGTATATCCTGTTC----------------------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| rat | tgctctttcacttgctaaCGACATTTAGTATATCCTGTTCTCACAGAGAGAATAGTAGTTCttttggttcaggttACTACCACTGTTTTCAAGAAGGCC | |||||||
| *************************************************************************************************** | ||||||||
| rat | .((.(((...((((..((((.....(((((...((((..((....((((((((....))))))))))..)))).)))))....))))..))))))))). | 0.930 -22.50 | ||||||
| rat | chromosome:8:69445256:69445354:-1 | intergenic |
sblock11757 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.058 | no | no | 0.32/0.63 | 18/25/0.13 | 1.5 0.0 0.0 0.8 0.0 | 0.5 0.0 0.0 0.6 0.0 | 4 1 4 5 1 | 0 0 0 0 0 | 2 1 1 2 1 | 0 0 0 0 0 | 15 22 31 19 13 | 17 6 6 14 24 | 5arm 5arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.25 0.28 0.26 0.30 0.26 | 4 6 3 3 2 | 15 | 2 | -1 | -5 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------GAGUCAC------------------------------------------ | 4 | novel | |
| seed | ----------------------------------------------------------------------------GACAUUA------------------------------ | 4 | novel | |
| seed | ------------------GGCAUGC---------------------------------------------------------------------------------------- | 3 | novel | |
| seed | -----------------------GCUUAGG----------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------GGGGCAU------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------------------------------------UCAUGAC---------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------AGGACAC------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------------TGAGTCACTTCATGACATT------------------------------- | 19 | - | 4 | |
| ---------------------------------------------------------------------------TGACATTAGGACACACCGC------------------- | 19 | 1 | 3 | |
| -----------------GGGCATGCTTAGGTATGAA----------------------------------------------------------------------------- | 19 | 1 | 1 | |
| -----------------------------------------------------------------------TTCATGACATTAGGACACAC---------------------- | 20 | - | 1 | |
| ---------------TGGGGCATGCTTAGGTATGA------------------------------------------------------------------------------ | 20 | - | 1 | |
| -----------------GGGCATGCTTAGGTATGA------------------------------------------------------------------------------ | 18 | 1 | - | |
| ---------------------------------------------------------------------------------TAGGACACACCGCGTCCCA------------- | 19 | - | 1 | |
| ----------------------TGCTTAGGTATGAAATAATAGACTC------------------------------------------------------------------ | 25 | - | 1 | |
| rat | tgggcacactgggagtggggcatgcttaggtatgaaataatagactcaaaaggtttcccaagaTGAGTCACTTCATGACATTAGGACACACCGCgtcccaaaataaaaagcct | |||
| ***************************************************************************************************************** | ||||
| rat | .((((....(((((((((....(((((((.((((((......((((((...((....))....))))))..))))))...))))).))..)))).))))).........)))) | 0.930 -29.92 | ||
| rat | chromosome:8:72056655:72056767:-1 | intergenic |
sblock6697 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.390 | no | no | 0.47/0.60 | 18/25/0.40 | 3.8 5.2 | 7.8 4.4 | 5 5 | 0 0 | 2 1 | 0 0 | 5 11 | 11 0 | 5arm 3arm | 1 1 | nd nd | 0.28 0.47 | 5 5 | 10 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------CACAGAU---------------------- | 2 | novel | |
| seed | -----------GCUUGUG------------------------------------------------------------------------ | 2 | novel | |
| seed | ------GGGUUGC----------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------AGGCCAG-------------------------------- | 2 | novel | |
| seed | ---------------GUGUGAG-------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------CAGCAGC---------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------------------------------------GCACAGATTGGATGAGAGT----------- | 19 | - | 2 | |
| --------------------------------------------------CAGGCCAGCAGCACAGATT--------------------- | 19 | - | 1 | |
| --------------TGTGTGAGGAGAGGTAGAG--------------------------------------------------------- | 19 | - | 1 | |
| ----------TGCTTGTGTGAGGAGAGGTAGAGA-------------------------------------------------------- | 24 | - | 1 | |
| -----TGGGTTGCTTGTGTGAGGAGAGGT------------------------------------------------------------- | 24 | - | 1 | |
| ------------------------------------------------------CCAGCAGCACAGATTGGATGAG-------------- | 22 | - | 1 | |
| --------------------------------------------------CAGGCCAGCAGCACAGATTG-------------------- | 20 | - | 1 | |
| ----------TGCTTGTGTGAGGAGAGGTAGAGAA------------------------------------------------------- | 25 | 1 | - | |
| -----TGGGTTGCTTGTGTGAGG------------------------------------------------------------------- | 18 | - | 1 | |
| rat | agtgtTGGGTTGCTTGTGTGAGGAGAGGTAGAGAAaggcaggagtggagaCAGGCCAGCAGCACAGATTGGATGAGAGTaggccccactc | |||
| ****************************************************************************************** | ||||
| rat | ((((..(((((((((((((..................((.((..((....))..)).)).)))))...........))))).))))))). | 0.450 -20.41 | ||
| rat | chromosome:20:5504800:5504889:-1 | intergenic |
sblock7971 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.512 | no | no | 0.26/0.45 | 18/24/0.54 | 1.5 2.0 0.0 | 1.5 3.6 0.0 | 2 10 1 | 0 0 0 | 1 2 1 | 0 0 0 | 2 10 7 | 22 7 20 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.42 0.27 0.58 | 8 4 7 | 13 | 2 | -6 | -6 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------CACCACU------------------------- | 5 | novel | |
| seed | ---------------------------------------------------------------CUUCCUC------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------------CCUCACC---------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------ACCACUA------------------------ | 1 | novel | |
| seed | ---GAUGAAU------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------GAAUAAA---------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------ACUAUGA------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------UCCUCAC----------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| --------------------------------------------------------------------TCACCACTACTATGAAGATAATC---------- | 23 | - | 3 | |
| --------------------------------------------------------------------TCACCACTACTATGAAGAT-------------- | 19 | 1 | 1 | |
| -----TGAATAAATGGTCTTTAAG----------------------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------TCCTCACCACTACTATGAAGA--------------- | 21 | - | 1 | |
| ---------------------------------------------------------------------CACCACTACTATGAAGAT-------------- | 18 | - | 1 | |
| --GGATGAATAAATGGTCTTT-------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------TCTTCCTCACCACTACTATGAAGA--------------- | 24 | - | 1 | |
| ---------------------------------------------------------------------------TACTATGAAGATAATCGGC------- | 19 | - | 1 | |
| ----------------------------------------------------------------TTCCTCACCACTACTATGAAGA--------------- | 22 | - | 1 | |
| --------------------------------------------------------------TCTTCCTCACCACTACTATG------------------- | 20 | - | 1 | |
| rat | aaGGATGAATAAATGGTCTTTAAGtggtattggaaatatgcccacatcatgacactgttcccTCTTCCTCACCACTACTATGAAGATAATCGGCcatgctt | |||
| ***************************************************************************************************** | ||||
| rat | (((.(((........(((((((((((((...((((........(((.........)))......))))..))))))....))))))).......))).))) | 0.580 -17.30 | ||
| rat | chromosome:3:76942498:76942598:1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31078 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.