other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH (5 loci)
sblock861 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.199 | no | no | 0.46/0.53 | 19/26/0.58 | 1.2 0.1 0.0 | 0.2 0.0 0.0 | 4 7 1 | 0 0 0 | 1 4 1 | 0 0 0 | 10 11 1 | 1 11 16 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.23 0.32 0.28 | 5 4 4 | 12 | 5 | 12 | 0 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------------------------ACCAUGG----------------------- | 6 | novel | ||||
| seed | -----------CAGUGAU---------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------------------------------------------------------------CCAUGGC---------------------- | 1 | novel | ||||
| seed | ---------------------------------------------------------------------GGCUCAC------------------ | 1 | novel | ||||
| seed | ----------------AUUGUGA----------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------TACCATGGCTCACTCCTTGA----------- | 20 | 2 | 1 | - | 2 | 1 | |
| ----------TCAGTGATTGTGACAGAGACAGGACT---------------------------------------------------------- | 26 | - | - | - | 3 | - | |
| ---------------GATTGTGACAGAGACAGGAC----------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| --------------------------------------------------------------------TGGCTCACTCCTTGATTTCACACTC- | 25 | - | - | 1 | - | - | |
| ----------------------------------------------------------------ACCATGGCTCACTCCTTGA----------- | 19 | - | - | - | 1 | - | |
| rat | aagagtgtagTCAGTGATTGTGACAGAGACAGGACTaaactcagcaccaccctagccccactgTACCATGGCTCACTCCTTGATTTCACACTCt | ||||||
| ********************************************************************************************** | |||||||
| rat | .(((((((((((((((((((((((((.....((.(((...............)))))...))))..))))).)))))....))))..))))))) | 0.620 -19.16 | |||||
| rat | chromosome:1:184353792:184353885:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_bulgeHIGH (5 loci)
sblock1429 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.37/0.58 | 18/23/0.41 | 0.0 3.0 0.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 0.0 | 2 3 1 1 8 12 | 0 0 0 0 0 0 | 1 2 1 1 2 1 | 0 0 0 0 0 0 | 2 8 23 45 26 16 | 28 16 6 -13 0 14 | 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 27 31 | nd nd nd nd nd nd | 0.37 0.53 0.38 0.44 0.30 0.58 | 4 10 4 7 6 10 | 32 | 2 | 11 | 10 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| seed | ------------------------AUUGUGG--------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------TATTGTGGTAGGGTGTCTGTG-------------------------------------------------------------- | 21 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggtgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.710 -30.15 | ||
| rat | chromosome:1:51121795:51121900:1 | intergenic |
sblock363 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.37/0.58 | 18/23/0.41 | 0.0 3.0 0.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 0.0 | 2 3 1 1 8 12 | 0 0 0 0 0 0 | 1 2 1 1 2 1 | 0 0 0 0 0 0 | 2 8 23 45 26 16 | 28 16 6 -13 0 14 | 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 27 31 | nd nd nd nd nd nd | 0.37 0.53 0.38 0.44 0.30 0.58 | 4 10 4 7 6 10 | 32 | 2 | 11 | 10 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| seed | ------------------------AUUGUGG--------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------TATTGTGGTAGGGTGTCTGTG-------------------------------------------------------------- | 21 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggtgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.710 -30.15 | ||
| rat | chromosome:1:50784237:50784342:-1 | intergenic |
sblock366 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.37/0.58 | 18/23/0.41 | 0.0 3.0 0.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 0.0 | 2 3 1 1 8 12 | 0 0 0 0 0 0 | 1 2 1 1 2 1 | 0 0 0 0 0 0 | 2 8 23 45 26 16 | 28 16 6 -13 0 14 | 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 27 31 | nd nd nd nd nd nd | 0.37 0.53 0.38 0.44 0.30 0.58 | 4 10 4 7 6 10 | 32 | 2 | 11 | 10 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| seed | ------------------------AUUGUGG--------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------TATTGTGGTAGGGTGTCTGTG-------------------------------------------------------------- | 21 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggtgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.710 -30.15 | ||
| rat | chromosome:1:50786052:50786157:-1 | intergenic |
sblock384 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.112 | no | no | 0.37/0.58 | 18/23/0.37 | 0.0 1.5 0.0 0.0 0.0 | 0.5 1.0 0.0 0.0 0.0 | 2 2 1 8 12 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 2 8 45 26 16 | 28 20 -13 0 14 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 31 | nd nd nd nd nd | 0.37 0.53 0.44 0.30 0.58 | 4 10 7 6 10 | 30 | 2 | -2 | -2 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggaagggcatctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.980 -30.15 | ||
| rat | chromosome:1:50838177:50838282:-1 | intergenic |
sblock433 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.105 | no | no | 0.37/0.58 | 18/23/0.58 | 0.0 1.5 0.0 0.0 0.0 | 0.5 1.0 0.0 0.0 0.0 | 2 2 1 1 8 | 0 0 0 0 0 | 1 2 1 1 2 | 0 0 0 0 0 | 2 8 16 45 26 | 28 20 16 -13 0 | 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop | 23 27 27 27 27 | nd nd nd nd nd | 0.37 0.53 0.67 0.44 0.30 | 4 10 10 7 6 | 19 | 2 | -14 | -7 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| seed | -----------------GACCAAU---------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| ----------------GGACCAATATTGTGGTAA------------------------------------------------------------------------ | 18 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtaaggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGcaagacctttacgggcgatggaagtc | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..((((((((..........(((..(((.(((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.870 -31.45 | ||
| rat | chromosome:1:51403861:51403966:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_nonpairedHIGH (5 loci)
sblock1515 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.21/0.47 | 19/23/0.30 | 0.0 0.0 0.7 | 0.0 0.0 0.7 | 1 1 6 | 0 0 0 | 1 1 2 | 0 0 0 | 10 27 16 | 16 2 18 | 5arm 5arm 3arm | 22 25 25 | nd nd nd | 0.32 0.32 0.32 | 4 4 2 | 10 | 2 | 12 | 16 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------AACAAAA----------------------------- | 5 | novel | |
| seed | ------------------------------------------------------------------------CUAACAA------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------------------------------ACAAAAU---------------------------- | 1 | novel | |
| seed | -----------UUGCCCA-------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------GAGUUGA--------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------------------------------------------TAACAAAATATAATCTGGT------------------ | 19 | 1 | 4 | |
| -----------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT---------------- | 23 | - | 2 | |
| ----------TTTGCCCAGGTTTGTCTTGAGT------------------------------------------------------------------------------ | 22 | - | 1 | |
| ---------------------------TGAGTTGAAGGCCAAAGTC---------------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------AACAAAATATAATCTGGTT----------------- | 19 | - | 1 | |
| rat | cagttcagcatttgcccaggtttgtcttgagttgaaggccaaagtcgatgcttttgacttttctgttcttcTCTAACAAAATATAATCTGGTTTaaggtcgctgtgaact | |||
| ************************************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | |||
| rat | .((((((((((((..((((((((((.(((....((((..(((((((((.....)))))))...))..)))).....))).))).)))))))....)))).)))..))))) | 0.990 -28.30 | ||
| rat | chromosome:1:51653079:51653188:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
sblock1575 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.563 | no | no | 0.32/0.47 | 19/19/0.00 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 5 1 1 1 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 18 28 22 5 0 | 6 2 8 25 30 | 5arm 3arm 3arm 3arm 3arm | 17 21 23 23 23 | nd nd nd nd nd | 0.32 0.37 0.37 0.37 0.44 | 3 4 4 3 6 | 10 | 2 | -2 | -3 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------GCCUUUG--------------------------------------- | 6 | novel | |
| seed | -------------------------------------------------------------------------------GGUCUGG----------- | 1 | novel | |
| seed | -------------------CUAUUUU----------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------GCCAUGG---------------- | 1 | novel | |
| seed | ---------------------------------------------------------GCAGAAG--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------------------TGCCTTTGCAGAAGGAAGT---------------------------- | 19 | 1 | 5 | |
| ------------------------------------------------------------------------------TGGTCTGGTTATAATTTTG | 19 | - | 1 | |
| --------------------------------------------------------TGCAGAAGGAAGTAGGATG---------------------- | 19 | - | 1 | |
| ------------------CCTATTTTGTGCTGTCTTG------------------------------------------------------------ | 19 | - | 1 | |
| -------------------------------------------------------------------------TGCCATGGTCTGGTTATAA----- | 19 | - | 1 | |
| rat | ctgtgctgactgtccaagcctattttgtgctgtcttgcctgggaacttccTGCCTTTGCAGAAGGAAGTaggatgccatggtctggttataattttg | |||
| ************************************************************************************************* | ||||
| ---------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<< | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | .((((((((((((.....((((((((...((((...((..(((.....)))))....))))...)))))))).....)))))).))).)))...... | 0.850 -22.50 | ||
| rat | chromosome:1:52006151:52006247:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock236 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.21/0.47 | 19/20/0.10 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 4 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 22 25 13 5 | 1 7 19 27 | 5arm 3arm 3arm 3arm | 25 25 25 25 | nd nd nd nd | 0.32 0.47 0.32 0.32 | 4 5 2 3 | 10 | 2 | 14 | 14 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------AACAAAA------------------------ | 5 | novel | |
| seed | ----------------------------------------------------------------------ACAAAAU----------------------- | 1 | novel | |
| seed | -----------------------GAGUUGA---------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------CUGUUCU------------------------------------ | 1 | miR-26b* | |
| seed | -----------------------------------------------------------------------------AUAAUCU---------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------CAAAAUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------TAACAAAATATAATCTGGT------------- | 19 | 1 | 4 | |
| ----------------------TGAGTTGAAGGCCAAAGTC----------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TCTGTTCTTCTTTAACAAA------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------AACAAAATATAATCTGGTT------------ | 19 | - | 1 | |
| ----------------------------------------------------------------------ACAAAATATAATCTGGTTTC---------- | 20 | - | 1 | |
| ----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC----- | 19 | - | 1 | |
| rat | cagcatttgcccagatttgtcttgagttgaaggccaaagtcgttgcttttgacttttctgttcttcttTAACAAAATATAATCTGGTttcaggtcactgt | |||
| **************************************************************************************************** | ||||
| rat | (((.(((((.((((((((((.(((....((((..((((((((.......))))))...))..)))).....))).))).)))))))...)))))..))). | 0.790 -23.20 | ||
| rat | chromosome:1:50002800:50002899:-1 | intergenic |
sblock338 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.027 | no | no | 0.21/0.47 | 19/20/0.10 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 4 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 22 25 13 5 | 2 8 20 28 | 5arm 3arm 3arm 3arm | 25 25 25 25 | nd nd nd nd | 0.32 0.47 0.32 0.32 | 4 5 2 3 | 10 | 2 | 14 | 14 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------AACAAAA------------------------ | 5 | novel | |
| seed | ----------------------------------------------------------------------ACAAAAU----------------------- | 1 | novel | |
| seed | -----------------------GAGUUGA---------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------CUGUUCU------------------------------------ | 1 | miR-26b* | |
| seed | -----------------------------------------------------------------------------AUAAUCU---------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------CAAAAUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------TAACAAAATATAATCTGGT------------- | 19 | 1 | 4 | |
| ----------------------TGAGTTGAAGGCCAAAGTC----------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TCTGTTCTTCTTTAACAAA------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------AACAAAATATAATCTGGTT------------ | 19 | - | 1 | |
| ----------------------------------------------------------------------ACAAAATATAATCTGGTTTC---------- | 20 | - | 1 | |
| ----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC----- | 19 | - | 1 | |
| rat | cagcatttgcccagatttgtcttgagttgaaggccaaagtcgatgcttttgacttttctgttcttcttTAACAAAATATAATCTGGTttcaggtcactgt | |||
| **************************************************************************************************** | ||||
| rat | (((.(((((.((((((((((.(((....((((..(((((((((.....)))))))...))..)))).....))).))).)))))))...)))))..))). | 0.830 -24.80 | ||
| rat | chromosome:1:50587777:50587876:-1 | intergenic |
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