other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_nonpairedHIGH (5 loci)
sblock386 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.064 | no | no | 0.21/0.37 | 19/22/0.20 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 4 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 10 25 13 5 | 11 8 20 28 | 5arm 3arm 3arm 3arm | 1 3 23 23 | nd nd nd nd | 0.32 0.47 0.47 0.42 | 3 3 6 3 | 10 | 2 | 10 | 1 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------AACAAAA------------------------ | 5 | novel | |
| seed | ----------------------------------------------------------------------ACAAAAU----------------------- | 1 | novel | |
| seed | -----------CAGAUUU---------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------CUGUUCU------------------------------------ | 1 | miR-26b* | |
| seed | -----------------------------------------------------------------------------AUAAUCU---------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------CAAAAUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------TAACAAAATATAATCTGGT------------- | 19 | 1 | 4 | |
| --------------------------------------------------------TCTGTTCTTCTTTAACAAA------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------AACAAAATATAATCTGGTT------------ | 19 | - | 1 | |
| ----------------------------------------------------------------------ACAAAATATAATCTGGTTTC---------- | 20 | - | 1 | |
| ----------CCAGATTTGTCTTGAGTTGAAA-------------------------------------------------------------------- | 22 | - | 1 | |
| ----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC----- | 19 | - | 1 | |
| rat | cagcatttgcccagatttgtcttgagttgaaagccaaagtcgatgcttttgacttttctgttcttcttTAACAAAATATAATCTGGTttcaggtcactgt | |||
| **************************************************************************************************** | ||||
| rat | (((.(((((.((((((((((...(((..(((....((((((((.....))))))))....)))..)))..))))......))))))...)))))..))). | 0.740 -21.70 | ||
| rat | chromosome:1:50838597:50838696:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK (5 loci)
sblock1417 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.21/0.47 | 19/23/0.31 | 0.0 0.0 0.0 0.7 0.0 | 0.0 0.0 0.0 0.7 0.0 | 1 1 1 6 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 10 27 26 11 5 | 16 2 7 18 28 | 5arm 5arm 3arm 3arm 3arm | 22 25 25 25 25 | nd nd nd nd nd | 0.41 0.21 0.37 0.47 0.42 | 4 2 2 6 4 | 13 | 2 | 16 | 20 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------AACAAAA------------------------ | 5 | novel | |
| seed | ------------------------------------------------------------------------CUAACAA-------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------------------AUAAUCU---------------- | 1 | novel | |
| seed | -----------UUGCCCA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------GAGUUGA---------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------CAAAAUA---------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------ACAAAAU----------------------- | 1 | novel | |
| seed | -------------------------------------------------------------UCCGUUC------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------------------------------------------TAACAAAATATAATCTGGT------------- | 19 | 1 | 4 | |
| -----------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT----------- | 23 | - | 2 | |
| ----------TTTGCCCAGGTTTGTCTTGAGT------------------------------------------------------------------------- | 22 | - | 1 | |
| ------------------------------------------------------------TTCCGTTCTTCTCTAACAA-------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------------ACAAAATATAATCTGGTTTC---------- | 20 | - | 1 | |
| ---------------------------TGAGTTGAAGGCCAAAGTC----------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------AACAAAATATAATCTGGTT------------ | 19 | - | 1 | |
| ---------------------------------------------------------------------------------TATAATCTGGTTTCAGGTC----- | 19 | - | 1 | |
| rat | cagttctgcctttgcccaggtttgtcttgagttgaaggccaaagtcgatgcttttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactgt | |||
| ********************************************************************************************************* | ||||
| rat | ((((...((((....((((((((((...(((..(((((..((((((((.....)))))))).)).)))..)))..))))......))))))....)))).)))). | 1.000 -28.20 | ||
| rat | chromosome:1:51064931:51065035:1 | intergenic |
sblock9582 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.56/0.64 | 18/22/0.66 | 0.0 0.0 | 0.0 1.6 | 6 17 | 0 0 | 3 7 | 0 0 | 24 5 | 4 24 | 5arm 3arm | 14 17 | nd nd | 0.23 0.09 | 2 1 | 44 | 8 | 21 | 21 |
| reads | miRBase family seed | |||||||||
| seed | -----------------------------------------------------------------------------------GGGUCCU------------------- | 34 | novel | |||||||
| seed | -------------------------GGGUCCU----------------------------------------------------------------------------- | 9 | novel | |||||||
| seed | ----------------------------------------------------------------------------------UGGGUCC-------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | |||
| ----------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCAT-------- | 19 | - | - | - | - | 2 | 8 | - | - | |
| ----------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGCC----- | 22 | - | - | - | - | 4 | 5 | - | - | |
| ----------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATG------- | 20 | 2 | 1 | - | - | 2 | 2 | - | 1 | |
| ------------------------TGGGTCCTTCAGGAGTCATGCC--------------------------------------------------------------- | 22 | - | - | 2 | - | 1 | 4 | - | - | |
| ----------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCA--------- | 18 | - | - | - | - | 1 | 2 | 1 | - | |
| ----------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGC------ | 21 | - | - | - | 1 | 1 | 1 | - | - | |
| ---------------------------------------------------------------------------------CTGGGTCCTTCAGGGGTCATG------- | 21 | - | - | - | - | - | 1 | - | - | |
| ------------------------TGGGTCCTTCAGGAGTCATGC---------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | |
| ------------------------TGGGTCCTTCAGGAGTCA------------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | - | |
| rat | gcatggtaggtccctgtggggcccTGGGTCCTTCAGGAGTCATGCCgggtaatgagaagcatggtaggtccctgtggggcccTGGGTCCTTCAGGGGTCATGCCgggta | |||||||||
| ************************************************************************************************************* | ||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000023143 ENSRNOG00000017037 RGD1560468_predicted | |||||||||
| rat | ((.(((((((((((((.(((((((.((((((..((((..((.(((((.((........)).)))))))..))))..)))))).))))))).)))))))).))))).)). | 1.000 -62.40 | ||||||||
| rat | chromosome:5:157735236:157735344:-1 | Same_strand|Intronic_coding|ENSRNOT00000023143|ENSRNOG00000017037 ## ENSRNOG00000017037|protein_coding|RGD1560468_predicted| ## {Repeats: trf 409 431 0 class=trf,trf 524 546 0 class=trf,trf 466 489 0 class=trf} |
sblock9583 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.56/0.64 | 18/22/0.66 | 0.0 0.0 | 0.0 1.6 | 6 17 | 0 0 | 3 7 | 0 0 | 25 4 | 4 24 | 5arm 3arm | 14 17 | nd nd | 0.23 0.09 | 2 1 | 44 | 8 | 21 | 21 |
| reads | miRBase family seed | |||||||||
| seed | ------------------------------------------------------------------------------------GGGUCCU------------------ | 34 | novel | |||||||
| seed | --------------------------GGGUCCU---------------------------------------------------------------------------- | 9 | novel | |||||||
| seed | -----------------------------------------------------------------------------------UGGGUCC------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | |||
| -----------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCAT------- | 19 | - | - | - | - | 2 | 8 | - | - | |
| -----------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGCC---- | 22 | - | - | - | - | 4 | 5 | - | - | |
| -----------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATG------ | 20 | 2 | 1 | - | - | 2 | 2 | - | 1 | |
| -------------------------TGGGTCCTTCAGGAGTCATGCC-------------------------------------------------------------- | 22 | - | - | 2 | - | 1 | 4 | - | - | |
| -----------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCA-------- | 18 | - | - | - | - | 1 | 2 | 1 | - | |
| -----------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGC----- | 21 | - | - | - | 1 | 1 | 1 | - | - | |
| -------------------------TGGGTCCTTCAGGAGTCA------------------------------------------------------------------ | 18 | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------------------------CTGGGTCCTTCAGGGGTCATG------ | 21 | - | - | - | - | - | 1 | - | - | |
| -------------------------TGGGTCCTTCAGGAGTCATGC--------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | |
| rat | agcatggtaggtccctgtggggcccTGGGTCCTTCAGGAGTCATGCCgggtaatgagaagcatggtaggtccctgtggggcccTGGGTCCTTCAGGGGTCATGCCgggt | |||||||||
| ************************************************************************************************************* | ||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000023143 ENSRNOG00000017037 RGD1560468_predicted | |||||||||
| rat | .((.(((((((((((((.(((((((.((((((..((((..((.(((((.((........)).)))))))..))))..)))))).))))))).)))))))).))))).)) | 1.000 -62.00 | ||||||||
| rat | chromosome:5:157735580:157735688:-1 | Same_strand|Intronic_coding|ENSRNOT00000023143|ENSRNOG00000017037 ## ENSRNOG00000017037|protein_coding|RGD1560468_predicted| ## {Repeats: trf 752 775 0 class=trf,trf 809 832 0 class=trf,trf 696 719 0 class=trf,trf 867 889 0 class=trf,trf 640 663 0 class=trf} |
sblock9587 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.56/0.64 | 18/22/0.66 | 0.0 0.0 | 0.0 1.6 | 6 17 | 0 0 | 3 7 | 0 0 | 23 4 | 4 23 | 5arm 3arm | 14 17 | nd nd | 0.27 0.14 | 2 1 | 44 | 8 | 20 | 20 |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------------------------------------------GGGUCCU------------------ | 34 | novel | |||||||
| seed | ------------------------GGGUCCU--------------------------------------------------------------------------- | 9 | novel | |||||||
| seed | --------------------------------------------------------------------------------UGGGUCC------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | |||
| --------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCAT------- | 19 | - | - | - | - | 2 | 8 | - | - | |
| --------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGCC---- | 22 | - | - | - | - | 4 | 5 | - | - | |
| --------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATG------ | 20 | 2 | 1 | - | - | 2 | 2 | - | 1 | |
| -----------------------TGGGTCCTTCAGGAGTCATGCC------------------------------------------------------------- | 22 | - | - | 2 | - | 1 | 4 | - | - | |
| --------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCA-------- | 18 | - | - | - | - | 1 | 2 | 1 | - | |
| --------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGC----- | 21 | - | - | - | 1 | 1 | 1 | - | - | |
| -------------------------------------------------------------------------------CTGGGTCCTTCAGGGGTCATG------ | 21 | - | - | - | - | - | 1 | - | - | |
| -----------------------TGGGTCCTTCAGGAGTCATGC-------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | |
| -----------------------TGGGTCCTTCAGGAGTCA----------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | - | |
| rat | gcatggtaggtccctgtggggccTGGGTCCTTCAGGAGTCATGCCgggtaatgagaagcatggtaggtccctgtggggccTGGGTCCTTCAGGGGTCATGCCgggt | |||||||||
| ********************************************************************************************************** | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000023143 ENSRNOG00000017037 RGD1560468_predicted | |||||||||
| rat | ((.(((((((((((((.((((((..(((((..((((..((.(((((.((........)).)))))))..))))..)))))..)))))).)))))))).))))).)) | 1.000 -59.70 | ||||||||
| rat | chromosome:5:157736205:157736310:-1 | Same_strand|Intronic_coding|ENSRNOT00000023143|ENSRNOG00000017037 ## ENSRNOG00000017037|protein_coding|RGD1560468_predicted| ## {Repeats: trf 1434 1457 0 class=trf,trf 1491 1513 0 class=trf} |
sblock9589 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.56/0.64 | 18/22/0.66 | 0.0 0.0 | 0.0 1.6 | 6 17 | 0 0 | 3 7 | 0 0 | 23 4 | 4 23 | 5arm 3arm | 14 17 | nd nd | 0.27 0.14 | 2 1 | 44 | 8 | 20 | 20 |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------------------------------------------GGGUCCU------------------ | 34 | novel | |||||||
| seed | ------------------------GGGUCCU--------------------------------------------------------------------------- | 9 | novel | |||||||
| seed | --------------------------------------------------------------------------------UGGGUCC------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | |||
| --------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCAT------- | 19 | - | - | - | - | 2 | 8 | - | - | |
| --------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGCC---- | 22 | - | - | - | - | 4 | 5 | - | - | |
| --------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATG------ | 20 | 2 | 1 | - | - | 2 | 2 | - | 1 | |
| -----------------------TGGGTCCTTCAGGAGTCATGCC------------------------------------------------------------- | 22 | - | - | 2 | - | 1 | 4 | - | - | |
| --------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCA-------- | 18 | - | - | - | - | 1 | 2 | 1 | - | |
| --------------------------------------------------------------------------------TGGGTCCTTCAGGGGTCATGC----- | 21 | - | - | - | 1 | 1 | 1 | - | - | |
| -------------------------------------------------------------------------------CTGGGTCCTTCAGGGGTCATG------ | 21 | - | - | - | - | - | 1 | - | - | |
| -----------------------TGGGTCCTTCAGGAGTCATGC-------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | |
| -----------------------TGGGTCCTTCAGGAGTCA----------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | - | |
| rat | gcatggtaggtccctgtggggccTGGGTCCTTCAGGAGTCATGCCgggtaatgagaagcatggtaggtccctgtggggccTGGGTCCTTCAGGGGTCATGCCgggt | |||||||||
| ********************************************************************************************************** | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000023143 ENSRNOG00000017037 RGD1560468_predicted | |||||||||
| rat | ((.(((((((((((((.((((((..(((((..((((..((.(((((.((........)).)))))))..))))..)))))..)))))).)))))))).))))).)) | 1.000 -59.70 | ||||||||
| rat | chromosome:5:157736607:157736712:-1 | Same_strand|Intronic_coding|ENSRNOT00000023143|ENSRNOG00000017037 ## ENSRNOG00000017037|protein_coding|RGD1560468_predicted| ## {Repeats: trf 1778 1800 0 class=trf,trf 1893 1915 0 class=trf,trf 1836 1859 0 class=trf} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (5 loci)
sblock10307 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.435 | no | no | 0.44/0.65 | 18/22/0.31 | 0.0 0.0 0.0 0.0 0.0 3.3 | 0.0 0.0 0.0 0.0 0.0 2.9 | 1 1 2 1 1 7 | 0 0 0 0 0 0 | 1 1 1 1 1 4 | 0 0 0 0 0 0 | 12 16 26 31 23 0 | 2 -6 -12 -17 -3 9 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm_loop 3arm | 2 2 2 2 2 2 | nd nd nd nd nd nd | 0.44 0.59 0.44 0.61 0.50 0.44 | 4 7 8 8 3 5 | 13 | 7 | -17 | 0 |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------GCAGGUG--------------- | 2 | novel | ||||||
| seed | ---------------------------ACAUCUC-------------------------------------------- | 2 | novel | ||||||
| seed | --------------------------------------------------GGGACAG--------------------- | 2 | novel | ||||||
| seed | -------------------------------------------------------------UGUUCAG---------- | 1 | novel | ||||||
| seed | -------------CCGGCCA---------------------------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------CUGAUGU--------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------GGUGUUC------------ | 1 | novel | ||||||
| seed | --------------------------------UCCUUUC--------------------------------------- | 1 | novel | ||||||
| seed | -----------------CCAAGAA------------------------------------------------------ | 1 | novel | ||||||
| seed | -----------------------------------------------------ACAGCAG------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------GACATCTCCTTTCTGATG---------------------------------- | 18 | - | - | - | - | - | 2 | - | |
| -------------------------------------------------------AGCAGGTGTTCAGTGCCCCC--- | 20 | - | - | - | - | 2 | - | - | |
| ----------------------------------------------------GACAGCAGGTGTTCAGTGC------- | 19 | - | - | 1 | - | - | - | - | |
| -------------------------------------------------AGGGACAGCAGGTGTTCAG---------- | 19 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------AGGGACAGCAGGTGTTCAGTG-------- | 21 | - | - | 1 | - | - | - | - | |
| ------------TCCGGCCAAGAACAGACA------------------------------------------------ | 18 | - | 1 | - | - | - | - | - | |
| -------------------------------------TCTGATGTAGTGAGGGAC----------------------- | 18 | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------AGGTGTTCAGTGCCCCCA-- | 18 | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------GTGTTCAGTGCCCCCAAA | 18 | - | 1 | - | - | - | - | - | |
| -------------------------------CTCCTTTCTGATGTAGTG----------------------------- | 18 | 1 | - | - | - | - | - | - | |
| ----------------GCCAAGAACAGACATCTCCTTT---------------------------------------- | 22 | - | - | - | 1 | - | - | - | |
| rat | tggcttctgaagTCCGGCCAAGAACAGACATCTCCTTTCTGATGTAGTGAGGGACAGCAGGTGTTCAGTGCCCCCAAA | ||||||||
| ****************************************************************************** | |||||||||
| >>>>>>>................................................................................. | ENSRNOT00000054613 ENSRNOG00000036506 U1 | ||||||||
| rat | .(((..(((((..((..((....((..(((((........))))).))...))......))..))))).)))...... | 0.810 -19.70 | |||||||
| rat | chromosome:6:75038117:75038194:1 | intergenic |
sblock10308 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.435 | no | no | 0.44/0.65 | 18/22/0.31 | 0.0 0.0 0.0 0.0 0.0 3.3 | 0.0 0.0 0.0 0.0 0.0 2.9 | 1 1 2 1 1 7 | 0 0 0 0 0 0 | 1 1 1 1 1 4 | 0 0 0 0 0 0 | 12 16 26 31 23 0 | 2 -6 -12 -17 -3 9 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm_loop 3arm | 2 2 2 2 2 2 | nd nd nd nd nd nd | 0.44 0.59 0.44 0.61 0.50 0.44 | 4 7 8 8 3 5 | 13 | 7 | -17 | 0 |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------GCAGGUG--------------- | 2 | novel | ||||||
| seed | ---------------------------ACAUCUC-------------------------------------------- | 2 | novel | ||||||
| seed | --------------------------------------------------GGGACAG--------------------- | 2 | novel | ||||||
| seed | -------------------------------------------------------------UGUUCAG---------- | 1 | novel | ||||||
| seed | -------------CCGGCCA---------------------------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------CUGAUGU--------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------GGUGUUC------------ | 1 | novel | ||||||
| seed | --------------------------------UCCUUUC--------------------------------------- | 1 | novel | ||||||
| seed | -----------------CCAAGAA------------------------------------------------------ | 1 | novel | ||||||
| seed | -----------------------------------------------------ACAGCAG------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------GACATCTCCTTTCTGATG---------------------------------- | 18 | - | - | - | - | - | 2 | - | |
| -------------------------------------------------------AGCAGGTGTTCAGTGCCCCC--- | 20 | - | - | - | - | 2 | - | - | |
| ----------------------------------------------------GACAGCAGGTGTTCAGTGC------- | 19 | - | - | 1 | - | - | - | - | |
| -------------------------------------------------AGGGACAGCAGGTGTTCAG---------- | 19 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------AGGGACAGCAGGTGTTCAGTG-------- | 21 | - | - | 1 | - | - | - | - | |
| ------------TCCGGCCAAGAACAGACA------------------------------------------------ | 18 | - | 1 | - | - | - | - | - | |
| -------------------------------------TCTGATGTAGTGAGGGAC----------------------- | 18 | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------AGGTGTTCAGTGCCCCCA-- | 18 | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------GTGTTCAGTGCCCCCAAA | 18 | - | 1 | - | - | - | - | - | |
| -------------------------------CTCCTTTCTGATGTAGTG----------------------------- | 18 | 1 | - | - | - | - | - | - | |
| ----------------GCCAAGAACAGACATCTCCTTT---------------------------------------- | 22 | - | - | - | 1 | - | - | - | |
| rat | tggcttctgaagTCCGGCCAAGAACAGACATCTCCTTTCTGATGTAGTGAGGGACAGCAGGTGTTCAGTGCCCCCAAA | ||||||||
| ****************************************************************************** | |||||||||
| >>>>>>>................................................................................. | ENSRNOT00000052524 ENSRNOG00000036505 U1 | ||||||||
| rat | .(((..(((((..((..((....((..(((((........))))).))...))......))..))))).)))...... | 0.810 -19.70 | |||||||
| rat | chromosome:6:75039367:75039444:1 | intergenic |
sblock3399 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.054 | no | no | 0.45/0.58 | 19/24/0.45 | 1.5 0.0 5.4 | 3.0 0.0 6.4 | 2 2 7 | 0 0 0 | 2 1 3 | 0 0 0 | 1 24 0 | 28 6 25 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.32 0.50 0.32 | 3 11 4 | 11 | 4 | 18 | 13 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------------------------------------UCCACAC---------------- | 2 | novel | |||
| seed | -------------------------GGUAAUC-------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------------------------------------GCUCAGU------------------------- | 2 | novel | |||
| seed | -----AGGACAG---------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------------------------------------------CCACACG--------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------------CAGUCUU---------------------- | 1 | novel | |||
| seed | --CAGAGGA------------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------------------------------CUUCCAC------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| ----------------------------------------------------------------------------------------------TTCCACACGGCCTTTAAAG----- | 19 | 1 | - | - | 1 | |
| ------------------------TGGTAATCAGCAGGAAATCGAGAG---------------------------------------------------------------------- | 24 | - | - | - | 2 | |
| -------------------------------------------------------------------------------------TGCTCAGTCTTCCACACGG-------------- | 19 | 1 | - | - | 1 | |
| ----------------------------------------------------------------------------------------TCAGTCTTCCACACGGCCTTTA-------- | 22 | - | 1 | - | - | |
| -----------------------------------------------------------------------------------------------TCCACACGGCCTTTAAAGCAAGT | 23 | - | - | - | 1 | |
| -GCAGAGGACAGTGGTAGAT-------------------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| --------------------------------------------------------------------------------------------TCTTCCACACGGCCTTTAA------- | 19 | - | - | - | 1 | |
| ----GAGGACAGTGGTAGATATTCTG-------------------------------------------------------------------------------------------- | 22 | - | - | - | 1 | |
| rat | tGCAGAGGACAGTGGTAGATATTCTGGTAATCAGCAGGAAATCGAGAGgcccacattctagtgggtcacagctttgcatgcctgaTGCTCAGTCTTCCACACGGCCTTTAAAGCAAGT | |||||
| ********************************************************************************************************************** | ||||||
| rat | ((((((((...((((.(((....(((((.(((((((...........(((((((......)))))))...........))).)))))).)))))).))))....)))))...)))... | 0.550 -35.55 | ||||
| rat | chromosome:12:5608374:5608491:1 | intergenic |
sblock704 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.971 | no | no | 0.37/0.54 | 19/26/0.57 | 2.0 1.0 1.8 | 0.5 0.5 1.6 | 2 2 17 | 0 0 0 | 2 1 3 | 0 0 0 | 15 49 0 | 5 -8 34 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.47 0.63 0.68 | 4 5 7 | 21 | 3 | 0 | -22 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------------------------GAAGCAG------------------ | 9 | novel | ||
| seed | --------------------------------------------------------------------------------------------GCAGCAG--------------- | 3 | novel | ||
| seed | -----------------------------------------------------------------------------------------------GCAGCAA------------ | 3 | novel | ||
| seed | ---------------------------------------------GUAACUU-------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------AGGCAGA------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------AACUUGG------------------------------------------------------------ | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------UUGAAGC-------------------- | 1 | novel | ||
| seed | --------------------AGAAUCC--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------------------------AGCAGCA---------------- | 1 | miR-15b/16/195/322/497 | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| ----------------------------------------------------------------------------------------TGAAGCAGCAGCAATCCCAACAC--- | 23 | - | 1 | 2 | |
| ----------------------------------------------------------------------------------------TGAAGCAGCAGCAATCCCAACACTCA | 26 | - | - | 3 | |
| ----------------------------------------------------------------------------------------------AGCAGCAATCCCAACACTCA | 20 | - | - | 3 | |
| -------------------------------------------------------------------------------------------AGCAGCAGCAATCCCAACACTCA | 23 | - | - | 3 | |
| ----------------------------------------------------------------------------------------TGAAGCAGCAGCAATCCCAACACTC- | 25 | - | - | 2 | |
| ----------------------------------------------------------------------------------------TGAAGCAGCAGCAATCCCA------- | 19 | 1 | - | - | |
| ----------------------------------------------TAACTTGGAAAAATGGGCA------------------------------------------------- | 19 | - | - | 1 | |
| -------------------CAGAATCCGTAACACCCCA---------------------------------------------------------------------------- | 19 | 1 | - | - | |
| --------------------------------------------TGTAACTTGGAAAAATGGGC-------------------------------------------------- | 20 | - | - | 1 | |
| --------------------------------------------------------------------------------------TTTGAAGCAGCAGCAATCC--------- | 19 | - | - | 1 | |
| ---------------CAGGCAGAATCCGTAACACCCCAA--------------------------------------------------------------------------- | 24 | - | - | 1 | |
| ------------------------------------------------------------------------------------------AAGCAGCAGCAATCCCAACACTC- | 23 | - | - | 1 | |
| rat | gcatagacgtcaaggCAGGCAGAATCCGTAACACCCCAAgctctTGTAACTTGGAAAAATGGGCAttgtggaggaaagcacgcggtTTTGAAGCAGCAGCAATCCCAACACTCA | ||||
| ****************************************************************************************************************** | |||||
| rat | ((.......(((((((..((....(((...(((.((((...(((........)))....))))...)))...)))......)).))))))).......)).............. | 0.450 -20.44 | |||
| rat | chromosome:1:128997230:128997343:-1 | intergenic |
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