other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (5 loci)
sblock716 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.045 | no | no | 0.53/0.58 | 19/22/0.58 | 0.0 0.0 1.4 | 0.0 0.0 0.3 | 1 1 10 | 0 0 0 | 1 1 3 | 0 0 0 | 2 14 0 | 9 -3 15 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.42 0.53 0.42 | 6 5 4 | 12 | 3 | -16 | 0 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------GAAUCAG------------ | 4 | novel | ||
| seed | -------------------------------------------------------CUGAAUC-------------- | 4 | novel | ||
| seed | ----------------------------------------------------------AAUCAGA----------- | 2 | novel | ||
| seed | ---------------GCACUGA------------------------------------------------------ | 1 | novel | ||
| seed | ---CCUUCAG------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T5S1 | |||
| --------------------------------------------------------TGAATCAGAAGGGGAGCCCT | 20 | - | 1 | 3 | |
| ------------------------------------------------------TCTGAATCAGAAGGGGAGCCCT | 22 | - | - | 3 | |
| ---------------------------------------------------------GAATCAGAAGGGGAGCCCT | 19 | 1 | - | 1 | |
| --TCCTTCAGTCAGTGCACTG------------------------------------------------------- | 19 | - | - | 1 | |
| --------------TGCACTGATGAGTGGCTGC------------------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------------TCTGAATCAGAAGGGGAGC--- | 19 | - | - | 1 | |
| rat | acTCCTTCAGTCAGTGCACTGATGAGTGGCTGCtggcccgccctcatttcctccTCTGAATCAGAAGGGGAGCCCT | ||||
| **************************************************************************** | |||||
| rat | .(((((((..((((......((((((.(((.........))))))))).......))))....)))))))...... | 0.940 -25.52 | |||
| rat | chromosome:1:129001011:129001086:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap (5 loci)
block845181 [novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.30/0.47 | 19/22/0.43 | 0.0 1.0 | 0.0 0.0 | 5 6 | 0 0 | 4 1 | 0 0 | 23 7 | -18 -6 | 5arm_loop_3arm 3arm_loop | 23 23 | nd nd | 0.63 0.30 | 10 3 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------CCACUGU-------------------------- | 8 | novel | |||
| seed | -------------------------------CCAAGGA------------------- | 3 | novel | |||
| seed | -----------------------------GUCCAAG--------------------- | 3 | novel | |||
| len | cloning frequencies | |||||
| T3S2 | T4S1 | T4S2 | T5S1 | |||
| -----------------------TCCACTGTCCAAGGACTTT--------------- | 19 | 1 | 1 | 1 | 5 | |
| ----------------------------TGTCCAAGGACTTTTATATTGT------- | 22 | - | - | - | 3 | |
| ------------------------------TCCAAGGACTTTTATATTGT------- | 20 | - | - | - | 3 | |
| rat | aggacctccagtgtgtcagtaccTCCACTGTCCAAGGACTTTTATATTGTaggacct | |||||
| ********************************************************* | ||||||
| rat | (((.(((.(((((((..(((.(((..........))))))..))))))).))).))) | 0.970 -16.20 | ||||
| rat | chromosome:1:50585404:50585460:-1 | intergenic |
block845212 [novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.30/0.47 | 19/22/0.43 | 0.0 1.0 | 0.0 0.0 | 5 6 | 0 0 | 4 1 | 0 0 | 23 7 | -18 -6 | 5arm_loop_3arm 3arm_loop | 23 23 | nd nd | 0.63 0.30 | 10 3 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------CCACUGU-------------------------- | 8 | novel | |||
| seed | -------------------------------CCAAGGA------------------- | 3 | novel | |||
| seed | -----------------------------GUCCAAG--------------------- | 3 | novel | |||
| len | cloning frequencies | |||||
| T3S2 | T4S1 | T4S2 | T5S1 | |||
| -----------------------TCCACTGTCCAAGGACTTT--------------- | 19 | 1 | 1 | 1 | 5 | |
| ----------------------------TGTCCAAGGACTTTTATATTGT------- | 22 | - | - | - | 3 | |
| ------------------------------TCCAAGGACTTTTATATTGT------- | 20 | - | - | - | 3 | |
| rat | aggacctccagtgtgtcagtaccTCCACTGTCCAAGGACTTTTATATTGTaggacct | |||||
| ********************************************************* | ||||||
| rat | (((.(((.(((((((..(((.(((..........))))))..))))))).))).))) | 0.970 -16.20 | ||||
| rat | chromosome:1:50587012:50587068:-1 | intergenic |
block961652 [novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.30/0.47 | 19/22/0.43 | 0.0 1.0 | 0.0 0.0 | 5 6 | 0 0 | 4 1 | 0 0 | 19 3 | -18 -6 | 5arm_loop_3arm 3arm_loop | 23 23 | nd nd | 0.63 0.30 | 10 3 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------CCACUGU---------------------- | 8 | novel | |||
| seed | -------------------------GUCCAAG----------------- | 3 | novel | |||
| seed | ---------------------------CCAAGGA--------------- | 3 | novel | |||
| len | cloning frequencies | |||||
| T3S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------TCCACTGTCCAAGGACTTT----------- | 19 | 1 | 1 | 1 | 5 | |
| --------------------------TCCAAGGACTTTTATATTGT--- | 20 | - | - | - | 3 | |
| ------------------------TGTCCAAGGACTTTTATATTGT--- | 22 | - | - | - | 3 | |
| rat | cctccagtgtgtcagtaccTCCACTGTCCAAGGACTTTTATATTGTagg | |||||
| ************************************************* | ||||||
| rat | (((.(((((((..(((.(((..........))))))..))))))).))) | 0.970 -12.10 | ||||
| rat | chromosome:1:51024774:51024822:1 | intergenic |
block963511 [novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.30/0.47 | 19/22/0.43 | 0.0 1.0 | 0.0 0.0 | 5 6 | 0 0 | 4 1 | 0 0 | 23 7 | -18 -6 | 5arm_loop_3arm 3arm_loop | 23 23 | nd nd | 0.63 0.30 | 10 3 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------CCACUGU-------------------------- | 8 | novel | |||
| seed | -------------------------------CCAAGGA------------------- | 3 | novel | |||
| seed | -----------------------------GUCCAAG--------------------- | 3 | novel | |||
| len | cloning frequencies | |||||
| T3S2 | T4S1 | T4S2 | T5S1 | |||
| -----------------------TCCACTGTCCAAGGACTTT--------------- | 19 | 1 | 1 | 1 | 5 | |
| ----------------------------TGTCCAAGGACTTTTATATTGT------- | 22 | - | - | - | 3 | |
| ------------------------------TCCAAGGACTTTTATATTGT------- | 20 | - | - | - | 3 | |
| rat | aggacctccagtgtgtcagtaccTCCACTGTCCAAGGACTTTTATATTGTaggacct | |||||
| ********************************************************* | ||||||
| ------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||||
| ------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||||
| rat | (((.(((.(((((((..(((.(((..........))))))..))))))).))).))) | 0.970 -16.20 | ||||
| rat | chromosome:1:51820917:51820973:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_coding|ENSRNOT00000048246|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1674 [novel_lenNOK_cloningOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.656 | no | no | 0.35/0.61 | 18/24/0.42 | 0.0 0.0 0.0 1.0 0.5 | 0.3 0.0 0.0 2.4 0.3 | 3 1 1 8 11 | 0 0 0 0 0 | 2 1 1 2 1 | 0 0 0 0 0 | 2 12 15 29 5 | 29 21 18 -4 30 | 5arm 5arm 5arm 5arm_loop 3arm | 38 38 38 38 40 | nd nd nd nd nd | 0.40 0.56 0.44 0.15 0.26 | 3 4 4 1 2 | 26 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------GGGUGUU------------------------------------------------------------------------------- | 7 | novel | ||
| seed | ---------------------------------------------------------------------------------------------UGACUAG---------------- | 7 | novel | ||
| seed | --------------------------------------------------------------------------------------------UUGACUA----------------- | 5 | novel | ||
| seed | ---GGUGUGU---------------------------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | ----------------GCUUUGU--------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------------------------UUUGACU------------------ | 1 | novel | ||
| seed | --------------------------------------UCGGGAG----------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------UAUGCUU------------------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S1 | T5S1 | |||
| --------------------------------------------------------------------------------------------TTGACTAGCCTTATGATCA----- | 19 | - | - | 6 | |
| -----------------------------TGGGTGTTGTCGGGAGTGTC------------------------------------------------------------------- | 20 | - | - | 3 | |
| -----------------------------TGGGTGTTGTCGGGAGTGTCCTG---------------------------------------------------------------- | 23 | - | - | 3 | |
| -------------------------------------------------------------------------------------------TTTGACTAGCCTTATGATC------ | 19 | - | - | 3 | |
| --TGGTGTGTATGTATGCTTT----------------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| -------------------------------------------------------------------------------------------TTTGACTAGCCTTATGATCA----- | 20 | - | - | 2 | |
| ---------------TGCTTTGTTCACTGTGGG----------------------------------------------------------------------------------- | 18 | - | - | 1 | |
| ------------GTATGCTTTGTTCACTGT-------------------------------------------------------------------------------------- | 18 | - | - | 1 | |
| -------------------------------------GTCGGGAGTGTCCTGAAA------------------------------------------------------------- | 18 | - | - | 1 | |
| --TGGTGTGTATGTATGCTTTG---------------------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| ------------------------------------------------------------------------------------------CTTTGACTAGCCTTATGATC------ | 20 | - | - | 1 | |
| --------------------------------------------------------------------------------------------TTGACTAGCCTTATGATC------ | 18 | - | - | 1 | |
| -----------------------------TGGGTGTTGTCGGGAGTGTCCTGA--------------------------------------------------------------- | 24 | - | 1 | - | |
| rat | tctggtgtgtatgtatgctttgttcactgTGGGTGTTGTCGGGAGTGTCCTGaaaagaagaagggcatgcccaatgactctttgcttcctcTTTGACTAGCCTTATGATCAtagag | ||||
| ******************************************************************************************************************** | |||||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | ||||
| rat | (((.(((..((((...(((..((.((....(((.((.((((((.(((((((..........))))))).)))...))).....)).)))....)))).)))..))))..)))))). | 0.550 -26.30 | |||
| rat | chromosome:1:52816449:52816564:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (5 loci)
block42702 [novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.180 | no | no | 0.44/0.60 | 18/26/0.11 | 1.9 | 1.1 | 19 | 0 | 6 | 0 | 0 | -25 | 3arm | 3 | nd | 0.39 | 6 | 19 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------CAGAACU------------- | 8 | novel | |||||
| seed | ---------------------------------------AGAACUG------------ | 3 | novel | |||||
| seed | -------------------------------------ACAGAAC-------------- | 2 | novel | |||||
| seed | ----------------------------------GACACAG----------------- | 2 | novel | |||||
| seed | -----------------------------UUUCAGA---------------------- | 2 | novel | |||||
| seed | ------------------------------------CACAGAA--------------- | 1 | novel | |||||
| seed | -----------------------------------ACACAGA---------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S2 | |||
| -------------------------------------ACAGAACTGACAACACCC--- | 18 | - | 1 | 1 | 3 | 1 | - | |
| ---------------------------------AGACACAGAACTGACAAC------- | 18 | 1 | - | - | 1 | - | - | |
| ------------------------------------CACAGAACTGACAACACCC--- | 19 | - | - | - | - | 1 | 1 | |
| --------------------------------------CAGAACTGACAACACCCG-- | 18 | - | 1 | - | 1 | - | - | |
| ----------------------------CTTTCAGACACAGAACTGACAACACC---- | 26 | - | - | - | 2 | - | - | |
| -----------------------------------ACACAGAACTGACAACACC---- | 19 | - | - | - | 1 | - | - | |
| -------------------------------------ACAGAACTGACAACACCCGC- | 20 | - | - | - | - | - | 1 | |
| -------------------------------------ACAGAACTGACAACACCCG-- | 19 | - | - | - | 1 | - | - | |
| --------------------------------------CAGAACTGACAACACCCGCC | 20 | - | - | - | - | 1 | - | |
| ----------------------------------GACACAGAACTGACAACAC----- | 19 | - | - | - | 1 | - | - | |
| rat | gcggttccgctccgttcttcttcacagtCTTTCAGACACAGAACTGACAACACCCGCC | |||||||
| ********************************************************** | ||||||||
| rat | ((((......((.(((((........(((.....)))..))))).))......)))). | 0.920 -10.60 | ||||||
| rat | chromosome:10:90676744:90676801:-1 | intergenic |
block96107 [novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.180 | no | no | 0.44/0.60 | 18/26/0.11 | 1.9 | 1.1 | 19 | 0 | 6 | 0 | 0 | -25 | 3arm | 3 | nd | 0.39 | 6 | 19 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------CAGAACU------------- | 8 | novel | |||||
| seed | ---------------------------------------AGAACUG------------ | 3 | novel | |||||
| seed | -------------------------------------ACAGAAC-------------- | 2 | novel | |||||
| seed | ----------------------------------GACACAG----------------- | 2 | novel | |||||
| seed | -----------------------------UUUCAGA---------------------- | 2 | novel | |||||
| seed | ------------------------------------CACAGAA--------------- | 1 | novel | |||||
| seed | -----------------------------------ACACAGA---------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S2 | |||
| -------------------------------------ACAGAACTGACAACACCC--- | 18 | - | 1 | 1 | 3 | 1 | - | |
| ---------------------------------AGACACAGAACTGACAAC------- | 18 | 1 | - | - | 1 | - | - | |
| ------------------------------------CACAGAACTGACAACACCC--- | 19 | - | - | - | - | 1 | 1 | |
| --------------------------------------CAGAACTGACAACACCCG-- | 18 | - | 1 | - | 1 | - | - | |
| ----------------------------CTTTCAGACACAGAACTGACAACACC---- | 26 | - | - | - | 2 | - | - | |
| -----------------------------------ACACAGAACTGACAACACC---- | 19 | - | - | - | 1 | - | - | |
| -------------------------------------ACAGAACTGACAACACCCGC- | 20 | - | - | - | - | - | 1 | |
| -------------------------------------ACAGAACTGACAACACCCG-- | 19 | - | - | - | 1 | - | - | |
| --------------------------------------CAGAACTGACAACACCCGCC | 20 | - | - | - | - | 1 | - | |
| ----------------------------------GACACAGAACTGACAACAC----- | 19 | - | - | - | 1 | - | - | |
| rat | gcggttccgctccgttcttcttcacagtCTTTCAGACACAGAACTGACAACACCCGCC | |||||||
| ********************************************************** | ||||||||
| rat | ((((......((.(((((........(((.....)))..))))).))......)))). | 0.920 -10.60 | ||||||
| rat | chromosome:10:90682397:90682454:1 | intergenic |
block96111 [novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.180 | no | no | 0.44/0.60 | 18/26/0.11 | 1.9 | 1.1 | 19 | 0 | 6 | 0 | 0 | -25 | 3arm | 3 | nd | 0.39 | 6 | 19 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------CAGAACU------------- | 8 | novel | |||||
| seed | ---------------------------------------AGAACUG------------ | 3 | novel | |||||
| seed | -------------------------------------ACAGAAC-------------- | 2 | novel | |||||
| seed | ----------------------------------GACACAG----------------- | 2 | novel | |||||
| seed | -----------------------------UUUCAGA---------------------- | 2 | novel | |||||
| seed | ------------------------------------CACAGAA--------------- | 1 | novel | |||||
| seed | -----------------------------------ACACAGA---------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S2 | |||
| -------------------------------------ACAGAACTGACAACACCC--- | 18 | - | 1 | 1 | 3 | 1 | - | |
| ---------------------------------AGACACAGAACTGACAAC------- | 18 | 1 | - | - | 1 | - | - | |
| ------------------------------------CACAGAACTGACAACACCC--- | 19 | - | - | - | - | 1 | 1 | |
| --------------------------------------CAGAACTGACAACACCCG-- | 18 | - | 1 | - | 1 | - | - | |
| ----------------------------CTTTCAGACACAGAACTGACAACACC---- | 26 | - | - | - | 2 | - | - | |
| -----------------------------------ACACAGAACTGACAACACC---- | 19 | - | - | - | 1 | - | - | |
| -------------------------------------ACAGAACTGACAACACCCGC- | 20 | - | - | - | - | - | 1 | |
| -------------------------------------ACAGAACTGACAACACCCG-- | 19 | - | - | - | 1 | - | - | |
| --------------------------------------CAGAACTGACAACACCCGCC | 20 | - | - | - | - | 1 | - | |
| ----------------------------------GACACAGAACTGACAACAC----- | 19 | - | - | - | 1 | - | - | |
| rat | gcggttccgctccgttcttcttcacagtCTTTCAGACACAGAACTGACAACACCCGCC | |||||||
| ********************************************************** | ||||||||
| rat | ((((......((.(((((........(((.....)))..))))).))......)))). | 0.920 -10.60 | ||||||
| rat | chromosome:10:90683982:90684039:1 | intergenic |
block1060953 [novel_lenNOK_cloningOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.052 | no | no | 0.42/0.52 | 19/26/0.53 | 8.6 | 9.7 | 17 | 0 | 6 | 0 | 0 | -9 | 5arm_loop_3arm | 1 | nd | 0.42 | 4 | 17 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------------ACCAUGG---------------------------------------- | 6 | novel | |||||
| seed | ---GGCUCAG----------------------------------------------------- | 2 | miR-24 | |||||
| seed | -AGGGCUC------------------------------------------------------- | 2 | novel | |||||
| seed | -------CAGUGAC------------------------------------------------- | 2 | novel | |||||
| seed | --------AGUGACU------------------------------------------------ | 1 | novel | |||||
| seed | ------UCAGUGA-------------------------------------------------- | 1 | novel | |||||
| seed | -----CUCAGUG--------------------------------------------------- | 1 | novel | |||||
| seed | ---------------UACCAUG----------------------------------------- | 1 | novel | |||||
| seed | -----------GACUUAC--------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------TACCATGGAATACCACTCC----------------------------- | 19 | - | - | 1 | 1 | - | 1 | |
| ------TCAGTGACTTACCATGGAA-------------------------------------- | 19 | - | - | - | - | 2 | - | |
| ---------------TACCATGGAATACCACTCCAGA-------------------------- | 22 | - | - | - | - | 2 | - | |
| AAGGGCTCAGTGACTTACCA------------------------------------------- | 20 | - | - | - | - | 2 | - | |
| --GGGCTCAGTGACTTACCATGGAA-------------------------------------- | 23 | - | - | - | - | 2 | - | |
| ---------------TACCATGGAATACCACTCCAGATGT----------------------- | 25 | - | - | - | - | 1 | - | |
| -----CTCAGTGACTTACCATGGA--------------------------------------- | 19 | - | - | - | - | 1 | - | |
| -------CAGTGACTTACCATGGAATACCACTC------------------------------ | 26 | - | - | - | - | 1 | - | |
| ----GCTCAGTGACTTACCATGGA--------------------------------------- | 20 | - | 1 | - | - | - | - | |
| ----------TGACTTACCATGGAATACCAC-------------------------------- | 21 | 1 | - | - | - | - | - | |
| --------------TTACCATGGAATACCACTCCAGA-------------------------- | 23 | - | - | - | 1 | - | - | |
| rat | AAGGGCTCAGTGACTTACCATGGAATACCACTCCAGATGTggtaacagccaggacgtagcctt | |||||||
| *************************************************************** | ||||||||
| rat | .((((((..((......((.(((..((((((.......))))))....)))))))..)))))) | 0.960 -18.50 | ||||||
| rat | chromosome:20:5522646:5522708:-1 | intergenic |
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