other hairpins
novel_lenNOK_gcHIGH_shortStem_randfoldOK (5 loci)
block520906 [novel_lenNOK_gcHIGH_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 1.00/1.00 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 24 | 3arm | 1 | nd | 0.18 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------CGGCGCC---------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----------------------------------------------------------------------------------CCGGCGCCCCGGGGCGGG | 18 | 1 | |
| rat | tcccggcagaggggcgccgaactcaacgggcccttcgggcacttccgccgagctctcggctcggttcgtgtccggggcggggCCGGCGCCCCGGGGCGGG | ||
| **************************************************************************************************** | |||
| rat | .(((.((...(((((((((..(((.....((((..(((((((....(((((((.....)))))))..))))))))))))))..)))))))))...))))) | 1.000 -63.90 |
| rat | chromosome:16:10156637:10156736:-1 | intergenic ## {Repeats: GC_rich 1 29 -1 class=Low_complexity,GC_rich 1 19 -1 class=Low_complexity} ## {SimpF: oe = 1.00 -1 CpG, -1 Eponine} |
novel_lenNOK_multiarm_5varHIGH_nonpairedHIGH_bulgeHIGH (5 loci)
block1411589 [novel_lenNOK_multiarm_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.533 | no | no | 0.60/0.68 | 18/20/0.40 | 0.0 2.0 | 0.0 1.0 | 1 4 | 0 0 | 1 3 | 0 0 | 31 10 | -18 1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.42 0.40 | 4 4 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------UCGCAGG------------------------- | 2 | novel | ||
| seed | --------------------------------CUGCCUC------------------------------ | 1 | novel | ||
| seed | ----------------------------------------CAGGGAC---------------------- | 1 | novel | ||
| seed | ------------------------------------------GGGACUA-------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S2 | T4S1 | T4S2 | |||
| ------------------------------------CTCGCAGGGACTACGAACCT------------- | 20 | - | 2 | - | |
| -------------------------------GCTGCCTCGCAGGGACTAC------------------- | 19 | - | - | 1 | |
| -----------------------------------------AGGGACTACGAACCTGGG---------- | 18 | - | - | 1 | |
| ---------------------------------------GCAGGGACTACGAACCTG------------ | 18 | 1 | - | - | |
| rat | actggagcctcagctgagtggcatgtcagagGCTGCCTCGCAGGGACTACGAACCTGGGctagaaaagt | ||||
| ********************************************************************* | |||||
| rat | (((..((((.(((....((((..(((..((((...)))))))....))))....))))))).....))) | 0.550 -18.30 | |||
| rat | chromosome:3:137162580:137162648:-1 | intergenic |
block1470083 [novel_lenNOK_multiarm_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.140 | no | no | 0.33/0.58 | 18/24/0.50 | 2.0 0.0 | 2.0 0.0 | 5 1 | 0 0 | 2 1 | 0 0 | 28 40 | 2 -9 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.37 0.42 | 4 5 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------AGCAAAA--------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------GUGUAGC------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------AGUGUCA--------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------AUGUGUA--------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ----------------------------------TAGCAAAAGTGTCATGGGC---------------------------------------------------------- | 19 | - | 2 | |
| ------------------------------TGTGTAGCAAAAGTGTCATG------------------------------------------------------------- | 20 | - | 2 | |
| ----------------------------------------AAGTGTCATGGGCCTTGGCAGGAG----------------------------------------------- | 24 | - | 1 | |
| ----------------------------AATGTGTAGCAAAAGTGT----------------------------------------------------------------- | 18 | 1 | - | |
| rat | ggattgcatttaattacaataagacagtAATGTGTAGCAAAAGTGTCATGGGCCTTGGCAGGAGcccccacttctgaagtcagtgctggcttctttgtggttatctattct | |||
| *************************************************************************************************************** | ||||
| rat | ((((......(((((((((.(((.(((((.((.....((.(((((....((((((.....)).)))).))))).))....)).))))).)))..)))))))))...)))). | 0.900 -29.30 | ||
| rat | chromosome:3:76965762:76965872:1 | intergenic |
sblock11556 [novel_lenNOK_multiarm_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.528 | no | no | 0.60/0.68 | 18/22/0.44 | 6.4 0.0 0.0 | 6.4 0.0 0.0 | 7 1 1 | 0 0 0 | 6 1 1 | 0 0 0 | 14 33 37 | 1 -4 -6 | 5arm 5arm_loop 3arm_loop | 2 2 2 | nd nd nd | 0.44 0.47 0.50 | 4 5 5 | 9 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | --------------------------AGGGAGA---------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -------------------------------------------------UGCGUGA----------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------GCUCUGG-------------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------GGGUCGC-------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------UCGCGUU----------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------UGGGUCG--------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------GCGUUAG--------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------GGGAGAC--------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S2 | |||
| --------------------CGCGTTAGGGAGACGCTCTGGT------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | |
| --------------------------AGGGAGACGCTCTGGTCC----------------------------------------------------------- | 18 | - | - | 1 | - | - | - | - | - | |
| -------------------------TAGGGAGACGCTCTGGTCCGGT-------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | |
| ---------------------------------CGCTCTGGTCCGGTTGTGC--------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | |
| --------------TTGGGTCGCGTTAGGGAGAC--------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| ------------------------------------------------GTGCGTGAGAGGAGGAGA------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | |
| ---------------TGGGTCGCGTTAGGGAGAC--------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | - | |
| -------------------------TAGGGAGACGCTCTGGTCCGG--------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | |
| ------------------GTCGCGTTAGGGAGACGC------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| rat | ggcttcagacgcttTTGGGTCGCGTTAGGGAGACGCTCTGGTCCGGTTGTGCGTGAGAGGAGGAGAgcccagcgccacagcgacccggagagggatggcggcc | |||||||||
| ******************************************************************************************************* | ||||||||||
| ----------------------------------------------------------------------------------------------------------------- | ENSRNOT00000060621 ENSRNOG00000005578 Btbd15 | |||||||||
| rat | (((((((.....(((((((((((.....((....(((((..(((..((......))..)))..)))))......))...))))))))))).....))).)))) | 0.920 -37.50 | ||||||||
| rat | chromosome:8:30972504:30972606:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000060621|ENSRNOG00000005578 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000060619|ENSRNOG00000005578 ## ENSRNOG00000005578|protein_coding|Btbd15|Zinc finger and BTB domain-containing protein 44 (BTB/POZ domain- containing protein 15). [Source:UniProtKB/Swiss-Prot;Acc:Q3SWU4] ## {SimpF: oe = 0.84 -1 CpG} |
sblock7501 [novel_lenNOK_multiarm_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.118 | no | no | 0.39/0.56 | 18/22/0.40 | 0.0 3.2 | 0.0 1.0 | 1 4 | 0 0 | 1 4 | 0 0 | 35 19 | -4 7 | 5arm_loop_3arm 3arm | 2 2 | nd nd | 0.44 0.33 | 4 4 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------AUGUUGG----------------------------- | 2 | novel | |||
| seed | -------------------------------------------------------------AGCAGAA----------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------GCAGAAU---------------------------------- | 1 | novel | |||
| seed | ------------------------------------CGCCUGA------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S2 | |||
| ------------------------------------------------------------------AATGTTGGGGGATGACGG------------------- | 18 | 1 | 1 | - | - | |
| -----------------------------------TCGCCTGAGAAATTGTTA-------------------------------------------------- | 18 | - | - | - | 1 | |
| ------------------------------------------------------------CAGCAGAATGTTGGGGGATGAC--------------------- | 22 | - | - | 1 | - | |
| -------------------------------------------------------------AGCAGAATGTTGGGGGATGAC--------------------- | 21 | - | - | - | 1 | |
| rat | cggcagcctcccacaatcctcggagtcccgcccctTCGCCTGAGAAATTGTTAaatcgctCAGCAGAATGTTGGGGGATGACGGgaagtgtttttgttggcga | |||||
| ******************************************************************************************************* | ||||||
| rat | ((.((((....(((..(((.((..(((((.((..(((..(((((..(((....)))..)))))..)))....)))))))..))))).))).....)))).)). | 0.990 -35.40 | ||||
| rat | chromosome:3:52000893:52000995:-1 | intergenic |
sblock9834 [novel_lenNOK_multiarm_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.436 | no | no | 0.44/0.67 | 18/20/0.38 | 0.0 1.3 1.0 | 0.0 0.7 0.2 | 1 3 4 | 0 0 0 | 1 2 4 | 0 0 0 | 24 16 4 | -4 6 19 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.39 0.45 0.33 | 4 5 4 | 8 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------------CCGUCAU----------------- | 2 | novel | |||||
| seed | -----------------------------------------------------CUGAAGC-------------------------- | 2 | novel | |||||
| seed | -------------------------GGCCUCU------------------------------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------------UGAGCUG------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------------------------CGUCAUG---------------- | 1 | novel | |||||
| seed | -----------------------------------------------------------------UCAUGAA-------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| -------------------------------------------------------------GCCGTCATGAAAAGTACTCC----- | 20 | - | - | - | - | 1 | 1 | |
| ----------------------------------------------------GCTGAAGCCGCCGTCATG---------------- | 18 | - | - | 2 | - | - | - | |
| ----------------------------------------------------------------GTCATGAAAAGTACTCCC---- | 18 | 1 | - | - | - | - | - | |
| --------------------------------------------------------------CCGTCATGAAAAGTACTCC----- | 19 | - | - | 1 | - | - | - | |
| ------------------------TGGCCTCTCTGGATCCTG-------------------------------------------- | 18 | - | - | - | 1 | - | - | |
| ------------------------------------------------CTGAGCTGAAGCCGCCGTCA------------------ | 20 | - | 1 | - | - | - | - | |
| rat | ggcggaggcttgtgattgactcccTGGCCTCTCTGGATCCTGgtcctgCTGAGCTGAAGCCGCCGTCATGAAAAGTACTCCCgccc | |||||||
| ************************************************************************************** | ||||||||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000017740 ENSRNOG00000013255 Dnajc8 | |||||||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000014919 ENSRNOG00000010396 NP_001101380.1 | |||||||
| rat | (((((((((((.....((((....(((((((...((((....))))....))).....))))..))))....)))).)))).))). | 0.890 -28.10 | ||||||
| rat | chromosome:5:152507971:152508056:1 | Opposite_strand|Intronic_coding|ENSRNOT00000017740|ENSRNOG00000013255 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000046741|ENSRNOG00000010396 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000014919|ENSRNOG00000010396 ## ENSRNOG00000013255|protein_coding|Dnajc8|DnaJ (Hsp40) homolog, subfamily C, member 8 Gene [Source:MGI (curated);Acc:Dnajc8-006] ## ENSRNOG00000010396|protein_coding|NP_001101380.1|eyes absent 3 homolog [Source:RefSeq_peptide;Acc:NP_001101380] |
novel_lenNOK_multiarm_DicerNOK_mirtron_randfoldOK (5 loci)
sblock12026 [novel_lenNOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.58/0.63 | 19/24/0.50 | 0.0 0.5 0.0 | 0.0 2.0 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 8 13 11 | 29 21 27 | 5arm 3arm 3arm | 1 1 2 | 80 2 0 | 0.26 0.16 0.30 | 2 1 5 | 4 | 4 | -8 | -1 |
| reads | miRBase family seed | |||||
| seed | ---------UGCCGGG------------------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------GAGAGCC---------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------------------UGAGAGC----------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------------------------CCUUCUC----------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S2 | T4S1 | T5S2 | |||
| ---------------------------------------------------------------------------------------GCCTTCTCTTGCCCTCACAG----------- | 20 | - | - | 1 | - | |
| ---------------------------------------------------------------------------------CTGAGAGCCTTCTCTTGCCCTCAC------------- | 24 | 1 | - | - | - | |
| ----------------------------------------------------------------------------------TGAGAGCCTTCTCTTGCCC----------------- | 19 | - | - | - | 1 | |
| --------GTGCCGGGCAAGTGAAGTG------------------------------------------------------------------------------------------- | 19 | - | 1 | - | - | |
| rat | tactcagaGTGCCGGGCAAGTGAAGTGgctctgtgagtccctagggtccgggtctcgaaggggaccatgtaagcaccaggaCTGAGAGCCTTCTCTTGCCCTCACAGcctcaaagtgg | |||||
| ********************************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>> | ENSRNOT00000018467 ENSRNOG00000013013 Tle3 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>> | ENSRNOT00000050105 ENSRNOG00000013013 Tle3 | |||||
| rat | ((((..(((.((.(((((((.(((..((((((...(((((...((((...((((((....))))))......)).)).))))).))))))))).))))))).....)))))..)))). | 0.960 -51.10 | ||||
| rat | chromosome:8:65487462:65487579:1 | Same_strand|Intronic_coding|ENSRNOT00000018467|ENSRNOG00000013013 ## ENSRNOG00000013013|protein_coding|Tle3|Transducin-like enhancer protein 3 (rTLE3). [Source:UniProtKB/Swiss-Prot;Acc:Q9JIT3] |
sblock4717 [novel_lenNOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.58/0.61 | 18/20/0.33 | 0.0 0.0 | 0.0 1.0 | 1 2 | 0 0 | 1 2 | 0 0 | 3 7 | 5 5 | 5arm 3arm | 2 2 | 35 1 | 0.21 0.35 | 3 4 | 3 | 3 | -1 | -3 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------GAAGAGC------------------- | 2 | novel | ||
| seed | ----UCUGCCA---------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S1 | T5S1 | |||
| ---TTCTGCCATGGGTACAGCC----------------------------------------- | 19 | - | 1 | - | |
| ------------------------------------TGAAGAGCTGGACCCCTG--------- | 18 | - | - | 1 | |
| ------------------------------------TGAAGAGCTGGACCCCTGCA------- | 20 | 1 | - | - | |
| rat | gggTTCTGCCATGGGTACAGCCagtcctctgggaacTGAAGAGCTGGACCCCTGCAggatctg | ||||
| *************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> | ENSRNOT00000032888 ENSRNOG00000023534 RGD1311565 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> | ENSRNOT00000032896 ENSRNOG00000023534 RGD1311565 | ||||
| rat | (((((((((...((((.((((((((((....))).)))....)))).))))..))))))))). | 1.000 -29.50 | |||
| rat | chromosome:16:18424201:18424263:-1 | Same_strand|Intronic_coding|ENSRNOT00000032896|ENSRNOG00000023534 ## ENSRNOG00000023534|protein_coding|RGD1311565|similar to 2410004L22Rik protein (RGD1311565), mRNA [Source:RefSeq_dna;Acc:NM_001024971] |
sblock7255 [novel_lenNOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.67/0.78 | 18/21/0.33 | 0.0 0.5 | 0.0 2.0 | 1 2 | 0 0 | 1 1 | 0 0 | 14 10 | 12 12 | 5arm 3arm | 1 1 | 52 2 | 0.11 0.10 | 1 2 | 3 | 1 | -3 | 2 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------UCGCCCU----------------------- | 1 | novel |
| seed | ---------------CGGGUGG---------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------CUCGCCC------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| -------------------------------------------------------------CTCGCCCTCACTCACCCTTGC---------- | 21 | 1 | |
| ------------------------------------------------------------CCTCGCCCTCACTCACCC-------------- | 18 | 1 | |
| --------------CCGGGTGGGTGGGTGGTG------------------------------------------------------------ | 18 | 1 | |
| rat | cccgagaccctcgcCCGGGTGGGTGGGTGGTGacgggcgtgccggaaccggcgcgctaacCCTCGCCCTCACTCACCCTTGCagcccaacgg | ||
| ******************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>> | ENSRNOT00000000637 ENSRNOG00000000529 Pim1 | ||
| rat | .(((.....((.((..(((((((((((.(((((.((((((((((....))))))))...)).))))))))))))))))..)))).....))) | 0.950 -52.50 |
| rat | chromosome:20:7817849:7817940:1 | Same_strand|Intronic_coding|ENSRNOT00000000637|ENSRNOG00000000529 ## ENSRNOG00000000529|protein_coding|Pim1|Proto-oncogene serine/threonine-protein kinase Pim-1 (EC 2.7.11.1). [Source:UniProtKB/Swiss-Prot;Acc:P26794] ## {SimpF: oe = 0.80 0 CpG} |
sblock9531 [novel_lenNOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.50/0.53 | 19/20/0.33 | 0.0 0.0 | 0.0 0.5 | 1 2 | 0 0 | 1 2 | 0 0 | 16 26 | 8 4 | 5arm 3arm | 1 1 | 54 4 | 0.16 0.05 | 1 1 | 3 | 3 | -4 | -2 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------UCACAGA-------------------------------------- | 2 | novel | ||
| seed | -----------------UGGGGUU--------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------TTCACAGAGTTCTCCACCCT-------------------------- | 20 | - | - | 1 | |
| -----------------------------------------------------------------TTCACAGAGTTCTCCACCC--------------------------- | 19 | 1 | - | - | |
| ----------------ATGGGGTTGGAAGGACTTG---------------------------------------------------------------------------- | 19 | - | 1 | - | |
| rat | tagagcctgagatcagATGGGGTTGGAAGGACTTGtgaaggtgtcattccgtctgcccagccatcTTCACAGAGTTCTCCACCCTttagggtcttcaaaactccaggtcta | ||||
| *************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000049358 ENSRNOG00000031431 Cdca8 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000048293 ENSRNOG00000031431 Cdca8 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000040572 ENSRNOG00000031431 Cdca8 | ||||
| rat | ((((.(((((((((....((((.(((.((((((((((((((((..................)))))))))).)))))))))))))....))))).........)))))))) | 1.000 -40.17 | |||
| rat | chromosome:5:144253186:144253296:-1 | Same_strand|Intronic_coding|ENSRNOT00000040572|ENSRNOG00000031431 ## ENSRNOG00000031431|protein_coding|Cdca8|cell division cycle associated 8 Gene [Source:MGI (curated);Acc:Cdca8-002] |
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