other hairpins
novel_lenNOK_multiarm_DicerNOK_mirtron_randfoldOK (5 loci)
sblock9822 [novel_lenNOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.47/0.68 | 19/20/0.33 | 0.0 0.0 | 0.0 0.5 | 1 2 | 0 0 | 1 2 | 0 0 | 21 17 | 22 13 | 5arm 3arm | 1 1 | 59 0 | 0.37 0.15 | 5 2 | 3 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------------GUACUGU----------------------------- | 2 | novel | ||
| seed | ----------------------GGGAAGG--------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T3S2 | |||
| ---------------------GGGGAAGGGGCAGGTTGCT---------------------------------------------------------------------------- | 19 | - | 1 | - | |
| -------------------------------------------------------------------------------TGTACTGTGACCTGTCCTAG----------------- | 20 | - | - | 1 | |
| -------------------------------------------------------------------------------TGTACTGTGACCTGTCCTA------------------ | 19 | 1 | - | - | |
| rat | cgggggagatgctgggcacttGGGGAAGGGGCAGGTTGCTgatacattgtgacatagacttggaaacagttggtaatagTGTACTGTGACCTGTCCTAGggtgacccaggacctgc | ||||
| ******************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000045413 ENSRNOG00000031475 Col16a1 | ||||
| rat | ((((.......((((((((((......((((((((((((...((((((((.((...(((.((....))))).)).))))))))..)))))))))))).))))).)))))..)))). | 1.000 -49.00 | |||
| rat | chromosome:5:149122421:149122536:1 | Same_strand|Boundary_non-coding|ENSRNOT00000042491|ENSRNOG00000031475 ## Same_strand|Intronic_coding|ENSRNOT00000045413|ENSRNOG00000031475 ## ENSRNOG00000031475|protein_coding|Col16a1|Col16a1 protein. [Source:UniProtKB/TrEMBL;Acc:Q568Y4] |
novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK (5 loci)
sblock4034 [novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.38/0.50 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 3 | 9 10 | 5arm 3arm | 1 1 | nd nd | 0.10 0.17 | 2 3 | 2 | 2 | 1 | -3 |
| reads | miRBase family seed | |||
| seed | -GUGAUCU-------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------GGAGCAC------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| -------------------------------------------TGGAGCACCACAAAGATC--- | 18 | 1 | - | |
| AGTGATCTTTGTGTTTTCCAC------------------------------------------- | 21 | - | 1 | |
| rat | AGTGATCTTTGTGTTTTCCACcttgttctgctttagaccaaggTGGAGCACCACAAAGATCaca | |||
| **************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003050 ENSRNOG00000002227 Kit | |||
| rat | .((((((((((((..((((((((((.((((...)))).))))))))))...)))))))))))). | 1.000 -36.60 | ||
| rat | chromosome:14:34983116:34983179:-1 | Same_strand|Intronic_coding|ENSRNOT00000003050|ENSRNOG00000002227 ## ENSRNOG00000002227|protein_coding|Kit|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog [Source:RefSeq_peptide;Acc:NP_071600] |
sblock4217 [novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.44/0.61 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 14 19 | 5arm 3arm | 1 1 | nd nd | 0.17 0.41 | 2 3 | 2 | 1 | 4 | 0 |
| reads | miRBase family seed | ||
| seed | -ACCCUAC----------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------AACCUUU---------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| AACCCTACAGGCTGGGAG------------------------------------------------------- | 18 | 1 | |
| -------------------------------------------------------GAACCTTTAGTTGGGTTC | 18 | 1 | |
| rat | AACCCTACAGGCTGGGAGcagggactgggcaggtaactgcaagttctttgttcttGAACCTTTAGTTGGGTTC | ||
| ************************************************************************* | |||
| rat | (((((.(((((..(((((((((((((..((((....)))).))).))))))))))...)))...)).))))). | 0.990 -28.60 |
| rat | chromosome:14:36610132:36610204:1 | intergenic |
sblock5090 [novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.36/0.43 | 21/25/0.33 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 0 3 | 37 20 | 5arm 3arm | 2 7 | nd nd | 0.48 0.24 | 7 2 | 3 | 1 | 0 | -11 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------GGCUCUA-------------------- | 2 | novel |
| seed | -GGUAUCC---------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------------------------------------TGGCTCTAGATCTTATAGTAATCTG--- | 25 | 2 | |
| TGGTATCCAAGTCTTGGTTCT--------------------------------------------------------------------------------------------- | 21 | 1 | |
| rat | TGGTATCCAAGTCTTGGTTCTatccctgatctgggtggagcttgggatggaaggacttgctcctcgaagcctttctccctggcttaTGGCTCTAGATCTTATAGTAATCTGctt | ||
| ****************************************************************************************************************** | |||
| rat | ........((((...((((((((....(((((((((.(((((.((((.((((((.(((........))))))))))))).)))))...)).)))))))..)))).)))).)))) | 0.680 -38.50 |
| rat | chromosome:17:20489047:20489160:-1 | intergenic |
sblock5188 [novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.33/0.44 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 3 | 11 2 | 5arm 3arm | 1 1 | nd nd | 0.28 0.06 | 3 1 | 2 | 2 | -6 | -6 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------UUUGUGG------------- | 1 | novel | |
| seed | -GAGGUAG------------------------------------------------------- | 1 | let-7a/7b/7c/7d/7e/7f/7i/miR-98 | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ------------------------------------------ATTTGTGGTTTTGGGATT--- | 18 | 1 | - | |
| TGAGGTAGTTCTAAGAGG--------------------------------------------- | 18 | - | 1 | |
| rat | TGAGGTAGTTCTAAGAGGtcctcagatggcttgggttttttcATTTGTGGTTTTGGGATTacc | |||
| *************************************************************** | ||||
| rat | ...(((((((((((((...((.(((((((...........))))))).))))))))))))))) | 1.000 -19.90 | ||
| rat | chromosome:17:66738037:66738099:-1 | intergenic |
sblock7509 [novel_lenNOK_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.61/0.62 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 0 | 3 14 | 5arm 3arm | 1 1 | nd nd | 0.24 0.29 | 3 2 | 2 | 2 | 10 | 4 |
| reads | miRBase family seed | |||
| seed | -----AGGCUGA----------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------CCACAGC---------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| -----------------------------------------------------TCCACAGCCTAGGGAGTG | 18 | 1 | - | |
| ----CAGGCTGAGGAAGCAGACCAC---------------------------------------------- | 21 | - | 1 | |
| rat | ctgcCAGGCTGAGGAAGCAGACCACtttctagcctaaacaaagtggaggagtcTCCACAGCCTAGGGAGTG | |||
| *********************************************************************** | ||||
| rat | ((.((((((((.(((.((...(((((((...........)))))))....)).))).)))))).)).)).. | 0.930 -26.70 | ||
| rat | chromosome:3:58375323:58375393:-1 | intergenic |
novel_lenNOK_multiarm_DicerOK_shortStem (5 loci)
sblock10854 [novel_lenNOK_multiarm_DicerOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.722 | no | no | 0.28/0.44 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 3 0 | 7 14 | 5arm 3arm | 1 1 | nd nd | 0.28 0.35 | 3 2 | 2 | 1 | 3 | 3 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------AAACAAC---------- | 1 | novel |
| seed | ----GGAAUGU----------------------------------------------------- | 1 | miR-1/206 |
| len | cloning frequencies | ||
| T1S1 | |||
| ---TGGAATGTTTCCTTGGCT------------------------------------------- | 18 | 1 | |
| ----------------------------------------------TAAACAACAAACTTAGGT | 18 | 1 | |
| rat | cttTGGAATGTTTCCTTGGCTctgagactcgagtgacagattttgcTAAACAACAAACTTAGGT | ||
| **************************************************************** | |||
| rat | (((.((..((((...(((((((((..((....))..))))....)))))..))))..)).))). | 0.910 -9.80 |
| rat | chromosome:7:77519586:77519649:-1 | intergenic |
sblock12241 [novel_lenNOK_multiarm_DicerOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.029 | no | no | 0.39/0.42 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 3 | 21 30 | 5arm 3arm | 1 1 | nd nd | 0.11 0.32 | 2 3 | 2 | 2 | 2 | 2 |
| reads | miRBase family seed | |||
| seed | -----GGGGGUU------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------UGUCAAA-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ---------------------------------------------------------------------------------ATGTCAAAGTGCCTCTATC--- | 19 | - | 1 | |
| ----TGGGGGTTGTTGATTTTA--------------------------------------------------------------------------------- | 18 | 1 | - | |
| rat | ggctTGGGGGTTGTTGATTTTAttctttagtgttctagaattaaattggactggttttaggtggagatggaataaaatgaaATGTCAAAGTGCCTCTATCgtc | |||
| ******************************************************************************************************* | ||||
| rat | (((.(((((((..(((((((((((((.......((((((((((........)))))))))).......)))))))).......)))))...)))))))..))) | 0.990 -25.55 | ||
| rat | chromosome:9:80674701:80674803:-1 | intergenic |
sblock4348 [novel_lenNOK_multiarm_DicerOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.069 | no | no | 0.44/0.46 | 18/24/0.67 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 2 0 | 11 10 | 5arm 3arm | 1 1 | nd nd | 0.17 0.39 | 2 8 | 3 | 2 | 1 | 3 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------CCUCAGG---------------- | 2 | novel | |
| seed | ---GAGUGUA------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| -----------------------------------------------------TCCTCAGGTACCTTGTCTTTTCTG | 24 | - | 2 | |
| --TGAGTGTATCTTCAGGAG--------------------------------------------------------- | 18 | 1 | - | |
| rat | aaTGAGTGTATCTTCAGGAGgccagccatagagacttgagaagctgtctgtccTCCTCAGGTACCTTGTCTTTTCTG | |||
| ***************************************************************************** | ||||
| rat | .(((((.((((((..((((((.(((..((((............))))))).)))))).)))))))))))........ | 1.000 -21.80 | ||
| rat | chromosome:15:225524:225600:-1 | intergenic |
sblock4541 [novel_lenNOK_multiarm_DicerOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.823 | no | no | 0.28/0.44 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 2 0 | 16 17 | 5arm 3arm | 1 1 | nd nd | 0.33 0.24 | 2 2 | 3 | 2 | 2 | 2 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------UAUGGCA---------- | 2 | novel | |
| seed | ---UGUAAGU----------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S2 | |||
| ---------------------------------------------------------CTATGGCACTCGTGAAAT | 18 | 1 | 1 | |
| --TTGTAAGTATGCTAAGAA------------------------------------------------------- | 18 | 1 | - | |
| rat | ttTTGTAAGTATGCTAAGAAaaaccgtgagatatatcgatgtgtatgcaagatccctCTATGGCACTCGTGAAAT | |||
| *************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000012788 ENSRNOG00000009288 Fgf14 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041551 ENSRNOG00000009288 Fgf14 | |||
| rat | (((((..(((..(((((((.......((..((((((....)))))).)).......))).)))))))..))))). | 0.840 -10.04 | ||
| rat | chromosome:15:109058339:109058413:-1 | Same_strand|Intronic_coding|ENSRNOT00000012788|ENSRNOG00000009288 ## ENSRNOG00000009288|protein_coding|Fgf14|Fibroblast growth factor 14 (FGF-14). [Source:UniProtKB/Swiss-Prot;Acc:Q8R5L7] |
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