miR-Intess: classification

other hairpins

novel_lenNOK_multiarm_DicerOK_shortStem (5 loci)

sblock8924 [novel_lenNOK_multiarm_DicerOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.754	no	no	0.42/0.78	18/19/0.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	4 3	6 19	5arm 3arm	1 1	28 20	0.17 0.32	1 3	2	2	2	1

		reads	miRBase family seed
seed	-----CCGCUGG--------------------------------------------------------------	1	novel
seed	-----------------------------------------------------GAGACAA--------------	1	novel
		len	cloning frequencies
			T1S1	T4S2
	----------------------------------------------------TGAGACAAAGTTGTGAGTC---	19	-	1
	----GCCGCTGGCAGTCTGGGC----------------------------------------------------	18	1	-
rat	gcgaGCCGCTGGCAGTCTGGGCttgcgcgtcaggtgagggaggagagaaggtTGAGACAAAGTTGTGAGTCcgt
	**************************************************************************
	........................>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000016217 ENSRNOG00000012100 Ssbp1
rat	(((.(((((.(((.((((.(((((.(((.....)))............))))).))))...)))))).)).)))	0.580 -15.52

rat

chromosome:4:68026617:68026690:1

novel_lenNOK_multiarm_loopOverlap_randfoldOK_bulgeHIGH (5 loci)

block852700 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.50/0.67	18/18/0.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	18 23	-4 -9	5arm_loop_3arm 5arm_loop_3arm	2 2	nd nd	0.33 0.28	4 4	2	2	na	na

		reads	miRBase family seed
seed	------------------------GGGGGUG-------------------------------	1	novel
seed	-------------------UUUUUGG------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T4S1
	------------------CTTTTTGGGGGTGGGAAA--------------------------	18	1	-
	-----------------------TGGGGGTGGGAAATCCCC---------------------	18	-	1
rat	gggttattttggttatttCTTTTTGGGGGTGGGAAATCCCCccaaaatatttgaacctggct
	**************************************************************
rat	.(((((....((((......(((((((((.((....)))))))))))......)))))))))	0.990 -20.30

rat

chromosome:1:64890434:64890495:-1

intergenic

block981421 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.44/0.55	18/20/0.33	0.0 0.0	0.0 1.0	1 2	0 0	1 2	0 0	41 45	-4 -10	5arm_loop_3arm 5arm_loop_3arm	1 1	nd nd	0.33 0.25	4 4	3	2	na	na

		reads	miRBase family seed
seed	----------------------------------------------AAGGUGG-----------------------------------------------------------	2	novel
seed	------------------------------------------GUUUAAG---------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1	T3S2
	-----------------------------------------GGTTTAAGGTGGTAGACT-----------------------------------------------------	18	-	1
	---------------------------------------------TAAGGTGGTAGACTTGCC-------------------------------------------------	18	-	1
	---------------------------------------------TAAGGTGGTAGACTTGCCCC-----------------------------------------------	20	1	-
rat	agcccatttaatccctgaaggagctgtgatctggccactttGGTTTAAGGTGGTAGACTTGCCCCtttcaatcaaggttgctttgtacatggactcaactggaggggtggct
	****************************************************************************************************************
rat	((((......((((((..((((((((((((..(((.(((((((((.((((.((((....))))))))..))))))))).)))..)).))))).)))..))..))))))))))	1.000 -40.70

rat

chromosome:1:87411876:87411987:1

intergenic

block2640277 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.74/0.78	18/19/0.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	10 17	-4 -10	5arm_loop_3arm 5arm_loop_3arm	1 1	nd nd	0.21 0.39	4 4	2	2	na	na

		reads	miRBase family seed
seed	------------------CCCCCCC----------------------------------	1	novel
seed	-----------GGGGUUU-----------------------------------------	1	novel
		len	cloning frequencies
			T1S2	T3S2
	----------TGGGGTTTCCCCCCCCCCA------------------------------	19	1	-
	-----------------TCCCCCCCCCCAGGGGAA------------------------	18	-	1
rat	tttaaatttaTGGGGTTTCCCCCCCCCCAGGGGAAagggtaaactccctgtctattaga
	***********************************************************
rat	...........((((((((((((((....))))...))).)))))))............	0.930 -19.00

rat

chromosome:9:100996301:100996359:1

intergenic ## {Repeats: dust 100996319 100996328 0 class=dust}

sblock3821 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.52/0.58	19/21/0.67	0.0 0.0	0.0 0.0	1 2	0 0	1 1	0 0	28 28	4 -5	5arm 3arm_loop	1 1	nd nd	0.26 0.43	4 4	3	2	na	na

		reads	miRBase family seed
seed	----------------------------------------------------CCCUGAC-----------------------------------------	2	novel
seed	-----------------------------CUGGCUG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2	T4S1
	---------------------------------------------------ACCCTGACTCTTTCTGACCAG----------------------------	21	-	2
	----------------------------CCTGGCTGGAACTGAGAGA-----------------------------------------------------	19	1	-
rat	ggaaaaatggatagcagcgttcagtgtgCCTGGCTGGAACTGAGAGAcctcACCCTGACTCTTTCTGACCAGtcccaggccacagctgtcccttctttcc
	****************************************************************************************************
rat	(((((...((...(((((.....(((.((((((((((....((((((..((.....)).))))))...))))..))))))))).))))).))...)))))	0.680 -36.70

rat

chromosome:13:103739431:103739530:-1

intergenic

sblock7799 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.58/0.68	19/19/0.00	0.0 0.0	0.0 0.0	2 1	0 0	1 1	0 0	0 37	33 -1	5arm 3arm	1 1	nd nd	0.26 0.32	5 4	3	2	na	na

		reads	miRBase family seed
seed	-GGAGUGU---------------------------------------------------------------------------------------------------------	2	miR-122
seed	----------------------------------------------------------GGGGUUG------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1	T5S2
	TGGAGTGTGTGACGGGTGT----------------------------------------------------------------------------------------------	19	2	-
	---------------------------------------------------------GGGGGTTGGCCTTGAGCCT-------------------------------------	19	-	1
rat	TGGAGTGTGTGACGGGTGTgtgtgtctgggtgtgcaggggtgtggcctccccatgctGGGGGTTGGCCTTGAGCCTtgaacacatcttggtcatcatacatatctgtgctgcc
	*****************************************************************************************************************
rat	.(((((.....(((((((((((((((.(((((((..(((((..((((.((((......))))..))))....)))))...))))))).))....)))))))))))))))).))	1.000 -48.30

rat

chromosome:3:168988538:168988650:-1

intergenic ## {Repeats: dust 168988632 168988651 0 class=dust,trf 1 12 0 class=trf}

novel_lenNOK_shortStem_5varHIGH_randfoldOK_bulgeHIGH (5 loci)

block648507 [novel_lenNOK_shortStem_5varHIGH_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.43/0.50	21/26/0.50	2.5	0.0	2	0	2	0	1	22	3arm	1	nd	0.27	4	2	2	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------------------AGUCAUG--------------	1	novel
seed	--------------------------------------------------------------------------------------------GCGCUAG-------------------	1	novel
		len	cloning frequencies
			T4S2	T5S1
	-------------------------------------------------------------------------------------------TGCGCTAGTCATGAAGGGACAAGTCT-	26	-	1
	------------------------------------------------------------------------------------------------TAGTCATGAAGGGACAAGTCT-	21	1	-
rat	caggttctctacaagagtagcgcccccaaaataaaggctctttggagaagaaaaccaaactctagaaccctggaggcttctcacagaacccTGCGCTAGTCATGAAGGGACAAGTCTg
	**********************************************************************************************************************
rat	((((.(((((.((.((.((((((...........(((...((((((((((.........((((((....)))))).)))))).))))..))))))))).)).)).)))))....))))	0.650 -37.00

rat

chromosome:17:20762275:20762392:1

intergenic

block1299791 [novel_lenNOK_shortStem_5varHIGH_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.70/0.89	18/20/0.50	2.0	1.0	2	0	2	0	1	33	3arm	2	nd	0.28	4	2	2	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------------AAAGCCC---------------	1	novel
seed	----------------------------------------------------------------------------------------------CCCCCUU-----------	1	novel
		len	cloning frequencies
			T3S1	T3S2
	---------------------------------------------------------------------------------------------GCCCCCTTGGGGGGGGGG-	18	1	-
	-----------------------------------------------------------------------------------------AAAAGCCCCCTTGGGGGGGG---	20	-	1
rat	ttctccctcttgggcttcttaatctcattgataagagaatgtaagagtgtctagcagacactccaggtcagttttattagtactaaaagAAAAGCCCCCTTGGGGGGGGGGg
	****************************************************************************************************************
rat	((((((((((.(((((((((......((((((((((...((...(((((((.....))))))).....)).)))))))))).....))))..)))))....)))))))))).	0.920 -39.60

rat

chromosome:2:155248836:155248947:1

intergenic ## {Repeats: dust 155248938 155248947 0 class=dust}

block1577665 [novel_lenNOK_shortStem_5varHIGH_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.38/0.48	21/25/0.50	3.5	1.5	2	0	2	0	0	8	3arm	1	nd	0.28	4	2	2	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------CAAUACU-------------	1	novel
seed	-----------------------------------------------------------GGCUCCU--------------------	1	novel
		len	cloning frequencies
			T1S1	T2S2
	----------------------------------------------------------TGGCTCCTCAATACTTTGGTCCTCT---	25	1	-
	-----------------------------------------------------------------TCAATACTTTGGTCCTCTTCT	21	-	1
rat	cagaagggtgaccactcctgttctaagggccacagcctaagcagcagtgtctgctaggTGGCTCCTCAATACTTTGGTCCTCTTCT
	**************************************************************************************
rat	.(((((((.(((((.....((....((((((...((((.(((((......)))))))))))).)))....))..))))))))))))	0.940 -34.00

rat

chromosome:4:122172393:122172478:-1

intergenic

block2311731 [novel_lenNOK_shortStem_5varHIGH_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.48/0.55	20/25/0.67	1.7	0.0	3	0	1	0	3	2	3arm	1	nd	0.25	4	3	1	na	na

		reads	miRBase family seed
seed	-------------------------------------GCUCUGU---------------	2	novel
seed	--------------------------------CAAAUGC--------------------	1	novel
		len	cloning frequencies
			T5S1
	------------------------------------TGCTCTGTACTGTGGGAGAC---	20	2
	-------------------------------ACAAATGCTCTGTACTGTGGGAGAC---	25	1
rat	ctttctcttttgcagagtttcattcgaaggaACAAATGCTCTGTACTGTGGGAGACgga
	***********************************************************
rat	((.((((((.((((((((....(((....))).....))))))))....)))))).)).	1.000 -19.90