other hairpins
novel_multiarm_DicerNOK_Multihit_randfoldOK_nonpairedHIGH (5 loci)
sblock3025 [novel_multiarm_DicerNOK_Multihit_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 31 9 | 8 25 | 5arm 3arm | 455 455 | nd nd | 0.45 0.38 | 4 3 | 4 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------------GGGGUUG---------------------- | 2 | novel | |
| seed | --------------------------------AGCAGAC------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------AGCAGAC------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ----------------------------------------------------------------------------------------TGGGGTTGGTAACAATGGAGC--------- | 21 | 2 | - | |
| --------------------------------------------------------------------GAGCAGACTGCAGGAGATGA------------------------------ | 20 | - | 1 | |
| -------------------------------GAGCAGACTGCAGGAGATGA------------------------------------------------------------------- | 20 | - | 1 | |
| rat | actgcaggagatgacggggttagtaacaatgGAGCAGACTGCAGGAGATGActgagttagtaataataGAGCAGACTGCAGGAGATGATGGGGTTGGTAACAATGGAGCagactgcag | |||
| ********************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | .((((((....((.((..((((.((((..((...((..((((((....((.((..((((....))))..))))..))))))....)).))..)))).))))..))...))..)))))) | 1.000 -34.80 | ||
| rat | chromosome:11:81742490:81742607:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Same_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 11828 11848 0 class=trf,trf 11791 11811 0 class=trf,trf 11770 11791 0 class=trf} |
novel_multiarm_DicerNOK_mirtron_randfoldOK (5 loci)
sblock11271 [novel_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.35/0.39 | 20/23/1.00 | 0.0 0.0 | 0.0 1.5 | 1 2 | 0 0 | 1 2 | 0 0 | 12 8 | 13 8 | 5arm 3arm | 1 1 | 52 4 | 0.20 0.10 | 2 2 | 3 | 3 | 0 | 3 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------AUUGUUU----------------------- | 2 | novel | ||
| seed | -------------GGAAAGU-------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T3S2 | |||
| ------------AGGAAAGTAACAGTACAGTA-------------------------------------------------------- | 20 | - | - | 1 | |
| ---------------------------------------------------------CATTGTTTCTGTTCTTTCCT----------- | 20 | - | 1 | - | |
| ---------------------------------------------------------CATTGTTTCTGTTCTTTCCTTCC-------- | 23 | 1 | - | - | |
| rat | gctgacaggaggAGGAAAGTAACAGTACAGTAcggcttaggttactacggttctaagCATTGTTTCTGTTCTTTCCTTCCacagagca | ||||
| **************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>> | ENSRNOT00000005910 ENSRNOG00000004284 Btg1 | ||||
| rat | (((....(((..(((((((.(((((.(((((...(((((((..((....))))))))))))))..)))))))))))))))....))). | 1.000 -32.70 | |||
| rat | chromosome:7:34030160:34030247:1 | Same_strand|Intronic_coding|ENSRNOT00000005910|ENSRNOG00000004284 ## ENSRNOG00000004284|protein_coding|Btg1|Protein BTG1 (Anti-proliferative factor). [Source:UniProtKB/Swiss-Prot;Acc:Q63073] |
sblock2137 [novel_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.55/0.57 | 20/23/1.00 | 0.0 0.0 | 0.0 1.0 | 1 2 | 0 0 | 1 2 | 0 0 | 8 2 | 12 9 | 5arm 3arm | 1 1 | 46 0 | 0.20 0.22 | 2 4 | 3 | 2 | -2 | 4 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------UGCCCAC----------------- | 2 | novel | |
| seed | ---------CAUAGAC-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -----------------------------------------------------CTGCCCACCATGGCTATGTAGTC-- | 23 | 1 | - | |
| -----------------------------------------------------CTGCCCACCATGGCTATGTAG---- | 21 | - | 1 | |
| --------CCATAGACCAGGTGATGGAC-------------------------------------------------- | 20 | 1 | - | |
| rat | aaggtcccCCATAGACCAGGTGATGGACagtggcagcaggccaccctgactcaCTGCCCACCATGGCTATGTAGTCct | |||
| ****************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>> | ENSRNOT00000025084 ENSRNOG00000018553 Pitpnm1 | |||
| rat | .(((.....(((((.(((((((..((.((((((...((((....))))..)))))))))))).))))))))....))) | 1.000 -31.30 | ||
| rat | chromosome:1:206694257:206694334:1 | Same_strand|Intronic_coding|ENSRNOT00000025084|ENSRNOG00000018553 ## Same_strand|Boundary_coding|ENSRNOT00000025084|ENSRNOG00000018553 ## ENSRNOG00000018553|protein_coding|Pitpnm1|Membrane-associated phosphatidylinositol transfer protein 1 (Phosphatidylinositol transfer protein, membrane-associated 1) (Pyk2 N-terminal domain-interacting receptor 2) (NIR-2). [Source:UniProtKB/Swiss-Prot;Acc:Q5U2N3] |
sblock2735 [novel_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.40/0.57 | 18/21/0.75 | 0.8 0.0 | 1.8 0.8 | 4 4 | 0 0 | 2 2 | 0 0 | 10 10 | 5 7 | 5arm 3arm | 2 2 | 40 0 | 0.30 0.22 | 3 2 | 8 | 2 | -1 | -1 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------CCAUGUC----------------------- | 4 | novel | |
| seed | -----------GCACAGC---------------------------------------------------------------- | 2 | novel | |
| seed | -------------ACAGCUG-------------------------------------------------------------- | 1 | novel | |
| seed | ------------CACAGCU--------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ---------------------------------------------------CCCATGTCTCATCTCCTGCA----------- | 20 | 2 | - | |
| ---------------------------------------------------CCCATGTCTCATCTCCTGCAG---------- | 21 | 1 | - | |
| -----------GCACAGCTGAATGAGATATGA-------------------------------------------------- | 21 | 1 | - | |
| ---------------------------------------------------CCCATGTCTCATCTCCTG------------- | 18 | - | 1 | |
| ------------CACAGCTGAATGAGATATGA-------------------------------------------------- | 20 | 1 | - | |
| ----------AGCACAGCTGAATGAGATAT---------------------------------------------------- | 20 | 1 | - | |
| ----------AGCACAGCTGAATGAGATA----------------------------------------------------- | 19 | - | 1 | |
| rat | tgttgtgcttAGCACAGCTGAATGAGATATGAactccgtatgagggaaaaaCCCATGTCTCATCTCCTGCAGaaagccaaca | |||
| ********************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> | ENSRNOT00000032861 ENSRNOG00000022216 NP_001099284.1 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> | ENSRNOT00000046990 ENSRNOG00000022216 NP_001099284.1 | |||
| rat | .((((.((((....(((..((.(((((((((...(((.......)))......)))))))))))..)))....)))))))). | 0.890 -24.80 | ||
| rat | chromosome:10:67721139:67721220:1 | Same_strand|Boundary_non-coding|ENSRNOT00000056076|ENSRNOG00000022216 ## Same_strand|Intronic_coding|ENSRNOT00000046990|ENSRNOG00000022216 ## ENSRNOG00000022216|protein_coding|NP_001099284.1|active BCR-related [Source:RefSeq_peptide;Acc:NP_001099284] |
sblock3056 [novel_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.48/0.52 | 20/23/1.00 | 0.5 0.2 | 0.5 0.0 | 2 4 | 0 0 | 1 2 | 0 0 | 28 27 | 8 8 | 5arm 3arm | 1 1 | 42 0 | 0.26 0.14 | 3 2 | 6 | 3 | -1 | -1 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------CUCUGCU---------------------------------------- | 3 | novel | ||
| seed | -----------------------------UUGGGGA------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------------------------------UCUGCUU--------------------------------------- | 1 | novel | ||
| seed | ------------------------------UGGGGAU----------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T3S2 | |||
| ------------------------------------------------------------------------CCTCTGCTTGTTCATTCCCAG--------------------------- | 21 | 2 | - | 1 | |
| -------------------------------------------------------------------------CTCTGCTTGTTCATTCCCAG--------------------------- | 20 | 1 | - | - | |
| -----------------------------TTGGGGATGGTTCTAAGCACA---------------------------------------------------------------------- | 21 | - | 1 | - | |
| ----------------------------CTTGGGGATGGTTCTAAGCACAT--------------------------------------------------------------------- | 23 | - | 1 | - | |
| rat | gccagctgggctcctgtacctgcatgccCTTGGGGATGGTTCTAAGCACATgggacgtgggaaacaaaggttCCTCTGCTTGTTCATTCCCAGgggatgtcttccagaagccttatgtgt | ||||
| ************************************************************************************************************************ | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000002530 ENSRNOG00000037909 Ppm1f | ||||
| rat | ((((...(((((.(((.....((((.(((((((((((((...((((((...(((((.((.....))...)))))..)))))).)))))))))))))))))....))).)))))..)).)) | 1.000 -50.60 | |||
| rat | chromosome:11:86087810:86087929:-1 | Same_strand|Intronic_coding|ENSRNOT00000002530|ENSRNOG00000037909 ## ENSRNOG00000037909|protein_coding|Ppm1f|Protein phosphatase 1F (EC 3.1.3.16) (Ca(2+)/calmodulin-dependent protein kinase phosphatase) (CaM-kinase phosphatase) (CaMKPase) (Partner of PIX 2). [Source:UniProtKB/Swiss-Prot;Acc:Q9WVR7] |
sblock999 [novel_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.65/0.73 | 18/22/0.80 | 1.0 0.0 | 3.3 0.5 | 3 2 | 0 0 | 3 2 | 0 0 | 9 13 | 16 23 | 5arm 3arm | 1 1 | 65 0 | 0.10 0.25 | 1 3 | 5 | 4 | 2 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------------------GCCCUGC-------------------------- | 2 | novel | |||
| seed | ----------GCCCGGG--------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------CCGGGGU------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------CCCGGGG-------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S1 | T4S1 | T5S2 | |||
| ----------GCCCGGGGTGAGTCAGGGCTCT------------------------------------------------------------------------------ | 22 | - | 1 | - | - | |
| ----------------------------------------------------------------------------AGCCCTGCCTCTTCCTGGCAG------------- | 21 | 1 | - | - | - | |
| ---------TGCCCGGGGTGAGTCAGG----------------------------------------------------------------------------------- | 18 | - | - | - | 1 | |
| -----------CCCGGGGTGAGTCAGGGCTCT------------------------------------------------------------------------------ | 21 | - | - | 1 | - | |
| ----------------------------------------------------------------------------AGCCCTGCCTCTTCCTGGCA-------------- | 20 | - | - | - | 1 | |
| rat | actggtgctTGCCCGGGGTGAGTCAGGGCTCTcctgtcatctgggccccctccgggctctgggaggccgccactggAGCCCTGCCTCTTCCTGGCAGggagcatcgagta | |||||
| ************************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> | ENSRNOT00000028697 ENSRNOG00000021139 Esrra | |||||
| rat | ((((((((((..((((((.(((.((((((((((((.(((...((((((.....))))))))).)))........))))))))).))).))))))....))))))).))). | 0.960 -55.70 | ||||
| rat | chromosome:1:209590834:209590943:-1 | Same_strand|Intronic_coding|ENSRNOT00000028697|ENSRNOG00000021139 ## ENSRNOG00000021139|protein_coding|Esrra|Steroid hormone receptor ERR1 (Estrogen-related receptor, alpha) (ERR- alpha) (Nuclear receptor subfamily 3 group B member 1). [Source:UniProtKB/Swiss-Prot;Acc:Q5QJV7] |
novel_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (5 loci)
block844909 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.027 | no | no | 0.43/0.45 | 20/22/1.00 | 0.3 0.0 | 0.3 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 40 46 | -4 -8 | 5arm_loop 5arm_loop_3arm | 36 36 | nd nd | 0.40 0.55 | 4 8 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------GGGAAGG---------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------GGAAGGA--------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------GACAAAG---------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------GGGAAGGACAAAGTACAAAG--------------------------------------------------------- | 20 | 1 | - | |
| ----------------------------------------TGGGAAGGACAAAGTACAAAG--------------------------------------------------------- | 21 | - | 1 | |
| ----------------------------------------------GGACAAAGTACAAAGGCACA---------------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------TGGGAAGGACAAAGTACAAAGG-------------------------------------------------------- | 22 | - | 1 | |
| rat | tggaaaacagagccagaggaagaatgagcacagagcaaacTGGGAAGGACAAAGTACAAAGGCACAtgggttttgccatctgcgtgttctctggtcaatctcccttggcctcatttct | |||
| ********************************************************************************************************************** | ||||
| rat | .(((((..((.((((..((.(((.(((.((.((((((.....(((.((.(((((..((........))..))))))).)))...)))))).)).))).)))))..))))))..))))) | 0.690 -37.30 | ||
| rat | chromosome:1:50356741:50356858:-1 | intergenic |
block845723 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.137 | no | no | 0.43/0.45 | 20/22/1.00 | 0.3 0.0 | 0.3 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 40 46 | -4 -8 | 5arm_loop 5arm_loop_3arm | 36 36 | nd nd | 0.40 0.55 | 4 8 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------GGGAAGG---------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------GGAAGGA--------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------GACAAAG---------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------GGGAAGGACAAAGTACAAAG--------------------------------------------------------- | 20 | 1 | - | |
| ----------------------------------------TGGGAAGGACAAAGTACAAAG--------------------------------------------------------- | 21 | - | 1 | |
| ----------------------------------------------GGACAAAGTACAAAGGCACA---------------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------TGGGAAGGACAAAGTACAAAGG-------------------------------------------------------- | 22 | - | 1 | |
| rat | tggaaaacagagccagaggaagaatgagcacagagcaaacTGGGAAGGACAAAGTACAAAGGCACAtgggttttgccatctgcgtgttctctggacaatctcccttggcctcatttct | |||
| ********************************************************************************************************************** | ||||
| rat | .(((((..((.((((..((.(((.((....(((((...((..(((.((.(((((..((........))..))))))).)))..))...)))))..)).)))))..))))))..))))) | 0.800 -32.80 | ||
| rat | chromosome:1:50788935:50789052:-1 | intergenic |
block1363783 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.200 | no | no | 0.42/0.52 | 19/23/0.75 | 0.0 0.3 | 0.0 0.3 | 1 3 | 0 0 | 1 2 | 0 0 | 9 18 | -4 -11 | 5arm_loop 5arm_loop_3arm | 12 14 | nd nd | 0.48 0.57 | 5 10 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------UCCAAGC-------------------------------------- | 2 | novel | ||
| seed | --------------------CCAAGCU------------------------------------- | 1 | novel | ||
| seed | ----------ACUGCAA----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T4S2 | |||
| ------------------CTCCAAGCTGGTCATTATCA-------------------------- | 20 | - | 1 | - | |
| ------------------CTCCAAGCTGGTCATTATCAC------------------------- | 21 | - | 1 | - | |
| -------------------TCCAAGCTGGTCATTATCA-------------------------- | 19 | - | - | 1 | |
| ---------GACTGCAAACTCCAAGCTGGTCA-------------------------------- | 23 | 1 | - | - | |
| rat | ctacaatgtGACTGCAAACTCCAAGCTGGTCATTATCACggcggaggccggtcagcaagatgga | ||||
| **************************************************************** | |||||
| rat | (((...((((((((....((((..((((..........))))))))..)))))).))...))). | 1.000 -17.40 | |||
| rat | chromosome:3:33017772:33017835:-1 | intergenic |
sblock1680 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.378 | no | no | 0.40/0.60 | 20/25/0.75 | 0.0 0.0 0.0 | 0.0 2.5 0.0 | 1 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 22 12 6 | -4 13 24 | 5arm_loop_3arm 3arm 3arm | 17 52 52 | nd nd nd | 0.41 0.50 0.55 | 4 4 9 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------GCAGGAC----------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------ACUGGCA------------------ | 1 | novel | ||
| seed | -----------------------UUGCAGG---------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T2S1 | |||
| ---------------------------------------------------------TGCAGGACCTCTACTGGCAC----------------- | 20 | - | 1 | - | |
| ---------------------------------------------------------TGCAGGACCTCTACTGGCACAAAAA------------ | 25 | - | 1 | - | |
| ----------------------GTTGCAGGACATAGACCCTCTC-------------------------------------------------- | 22 | - | - | 1 | |
| --------------------------------------------------------------------TACTGGCACAAAAATTCCAC------ | 20 | 1 | - | - | |
| rat | caactgttgcaggaccaacaagGTTGCAGGACATAGACCCTCTCggcagctagaattTGCAGGACCTCTACTGGCACAAAAATTCCACagttgc | ||||
| ********************************************************************************************** | |||||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | ||||
| rat | (((((((....((((((...((((((((((...(((..((....))...)))...))))))..))))....))).........)))))))))). | 0.410 -21.10 | |||
| rat | chromosome:1:52818273:52818366:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
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