other hairpins
novel_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (5 loci)
sblock194 [novel_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.058 | no | no | 0.42/0.52 | 19/21/0.75 | 0.0 0.7 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 28 3 | -3 20 | 5arm_loop 3arm | 7 25 | nd nd | 0.48 0.42 | 4 5 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------CUCCAAA---------------- | 2 | novel | |
| seed | -----------------------------ACUGUCC-------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------CCAAAGU-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------------CCTCCAAAGTTGGAAGAACTG--- | 21 | - | 2 | |
| ----------------------------------------------------------------------------TCCAAAGTTGGAAGAACTG--- | 19 | - | 1 | |
| ----------------------------TACTGTCCCAGAACCTCCACT------------------------------------------------- | 21 | 1 | - | |
| rat | tgcagcacctcctttgtcccatcactttTACTGTCCCAGAACCTCCACTttccaggacctattctgttgcagggCCTCCAAAGTTGGAAGAACTGcac | |||
| ************************************************************************************************** | ||||
| rat | (((((..((..(((((.(((...........(((..(((((..(((........)))....)))))..))))))....)))))..)).....))))). | 0.500 -21.70 | ||
| rat | chromosome:1:49041859:49041956:-1 | intergenic |
miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (4 loci)
sblock3925 (miRNA) [miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.540 | no | no | 0.50/0.68 | 18/23/0.33 | 0.0 0.5 0.0 0.0 0.0 | 0.0 2.0 0.0 0.0 0.0 | 1 2 1 1 1 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 11 27 39 43 4 | 19 -3 -10 -14 22 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 18 | nd nd nd nd nd | 0.39 0.35 0.53 0.53 0.42 | 7 6 10 10 3 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------------------CUCUGCU--------------- | 1 | novel | |||
| seed | ------------GCGAGUA------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ----------------------------GCGCCUC-------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------GAAGCAC-------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------CACGACU---------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------CGCCUCA------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S1 | T3S2 | |||
| ---------------------------AGCGCCTCACTCTGAAGCAC-------------------------------------------------------- | 20 | 1 | - | - | - | |
| --------------------------------------------------------------------------------CCTCTGCTCTGCACCGACC---- | 19 | - | - | 1 | - | |
| -----------GGCGAGTATCTCTTTGAG-------------------------------------------------------------------------- | 18 | 1 | - | - | - | |
| ----------------------------GCGCCTCACTCTGAAGCACGACT---------------------------------------------------- | 23 | - | 1 | - | - | |
| -------------------------------------------GCACGACTAGGCCTCTGTG----------------------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------TGAAGCACGACTAGGCCTC--------------------------------------------- | 19 | - | 1 | - | - | |
| rat | aggcatctctgGGCGAGTATCTCTTTGAGCGCCTCACTCTGAAGCACGACTAGGCCTCTGTGccttccaaggggctccctCCTCTGCTCTGCACCGACCacct | |||||
| ******************************************************************************************************* | ||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................................................................... | ENSRNOT00000044575 ENSRNOG00000031540 | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>........................................ | ENSRNOT00000054482 ENSRNOG00000036362 | |||||
| rat | (((....((.(((((((((.......((((.(((......((((((((..........))))).)))..))).)))).......))))).)).))))...))) | 0.840 -26.44 | ||||
| rat | chromosome:13:86732903:86733005:1 | Same_strand|Exonic_non-coding|ENSRNOT00000044575|ENSRNOG00000031540 ## Same_strand|Boundary_non-coding|ENSRNOT00000044575|ENSRNOG00000031540 ## intergenic ## ENSRNOG00000036362|miRNA|| ## ENSRNOG00000031540|pseudogene|| |
sblock5147 (miRNA) [miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.323 | no | no | 0.50/0.68 | 18/23/0.33 | 0.0 0.5 0.0 0.0 0.0 | 0.0 2.0 0.0 0.0 0.0 | 1 2 1 1 1 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 11 27 39 43 4 | 19 -3 -10 -14 22 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 18 | nd nd nd nd nd | 0.39 0.35 0.53 0.53 0.37 | 7 6 10 10 3 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------------------CUCUGCU--------------- | 1 | novel | |||
| seed | ------------GCGAGUA------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ----------------------------GCGCCUC-------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------GAAGCAC-------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------CACGACU---------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------CGCCUCA------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S1 | T3S2 | |||
| ---------------------------AGCGCCTCACTCTGAAGCAC-------------------------------------------------------- | 20 | 1 | - | - | - | |
| --------------------------------------------------------------------------------CCTCTGCTCTGCACCGACC---- | 19 | - | - | 1 | - | |
| -----------GGCGAGTATCTCTTTGAG-------------------------------------------------------------------------- | 18 | 1 | - | - | - | |
| ----------------------------GCGCCTCACTCTGAAGCACGACT---------------------------------------------------- | 23 | - | 1 | - | - | |
| -------------------------------------------GCACGACTAGGCCTCTGTG----------------------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------TGAAGCACGACTAGGCCTC--------------------------------------------- | 19 | - | 1 | - | - | |
| rat | aggcatctctgGGCGAGTATCTCTTTGAGCGCCTCACTCTGAAGCACGACTAGGCCTCTGTGccttccaaggggctccctCCTCTGCTCTGCACCGACCgcct | |||||
| ******************************************************************************************************* | ||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>........................................ | ENSRNOT00000054512 ENSRNOG00000036397 | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>....................................................... | ENSRNOT00000048298 ENSRNOG00000018804 RGD1306939 | |||||
| rat | ((((...((.(((((((((.......((((.(((......((((((((..........))))).)))..))).)))).......))))).)).))))..)))) | 0.860 -30.24 | ||||
| rat | chromosome:17:47394320:47394422:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000025440|ENSRNOG00000018804 ## Same_strand|Exonic_non-coding|ENSRNOT00000054512|ENSRNOG00000036397 ## Same_strand|Exonic_coding|ENSRNOT00000048298|ENSRNOG00000018804 ## intergenic ## ENSRNOG00000036397|miRNA|| ## ENSRNOG00000018804|protein_coding|RGD1306939|similar to mKIAA0386 protein (RGD1306939), mRNA [Source:RefSeq_dna;Acc:NM_001014009] |
sblock6042 (miRNA) [miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.323 | no | no | 0.50/0.68 | 18/23/0.33 | 0.0 0.5 0.0 0.0 0.0 | 0.0 2.0 0.0 0.0 0.0 | 1 2 1 1 1 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 11 27 39 43 4 | 19 -3 -10 -14 22 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 18 18 18 18 18 | nd nd nd nd nd | 0.39 0.35 0.53 0.53 0.37 | 7 6 10 10 3 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------------------CUCUGCU--------------- | 1 | novel | |||
| seed | ------------GCGAGUA------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ----------------------------GCGCCUC-------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------GAAGCAC-------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------CACGACU---------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------CGCCUCA------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S1 | T3S2 | |||
| ---------------------------AGCGCCTCACTCTGAAGCAC-------------------------------------------------------- | 20 | 1 | - | - | - | |
| --------------------------------------------------------------------------------CCTCTGCTCTGCACCGACC---- | 19 | - | - | 1 | - | |
| -----------GGCGAGTATCTCTTTGAG-------------------------------------------------------------------------- | 18 | 1 | - | - | - | |
| ----------------------------GCGCCTCACTCTGAAGCACGACT---------------------------------------------------- | 23 | - | 1 | - | - | |
| -------------------------------------------GCACGACTAGGCCTCTGTG----------------------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------TGAAGCACGACTAGGCCTC--------------------------------------------- | 19 | - | 1 | - | - | |
| rat | aggcatctctgGGCGAGTATCTCTTTGAGCGCCTCACTCTGAAGCACGACTAGGCCTCTGTGccttccaaggggctccctCCTCTGCTCTGCACCGACCgcct | |||||
| ******************************************************************************************************* | ||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>........................................ | ENSRNOT00000054544 ENSRNOG00000036432 | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................................................................... | ENSRNOT00000049594 ENSRNOG00000039093 | |||||
| rat | ((((...((.(((((((((.......((((.(((......((((((((..........))))).)))..))).)))).......))))).)).))))..)))) | 0.860 -30.24 | ||||
| rat | chromosome:2:61990027:61990129:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000054544|ENSRNOG00000036432 ## Same_strand|Boundary_non-coding|ENSRNOT00000049594|ENSRNOG00000039093 ## intergenic ## ENSRNOG00000039093|pseudogene|| ## ENSRNOG00000036432|miRNA|| |
sblock833 (miRNA) [miRNAunknown_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.276 | no | no | 0.50/0.68 | 18/23/0.50 | 0.0 0.5 0.0 | 0.0 2.0 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 15 31 8 | 19 -3 22 | 5arm 5arm_loop 3arm | 18 18 18 | 31 14 38 | 0.39 0.35 0.37 | 7 6 3 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------------CUCUGCU------------------- | 1 | novel | ||
| seed | ----------------GCGAGUA---------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------CGCCUCA----------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------GCGCCUC------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T3S1 | |||
| ------------------------------------------------------------------------------------CCTCTGCTCTGCACCGACC-------- | 19 | - | - | 1 | |
| ---------------GGCGAGTATCTCTTTGAG------------------------------------------------------------------------------ | 18 | 1 | - | - | |
| -------------------------------AGCGCCTCACTCTGAAGCAC------------------------------------------------------------ | 20 | 1 | - | - | |
| --------------------------------GCGCCTCACTCTGAAGCACGACT-------------------------------------------------------- | 23 | - | 1 | - | |
| rat | gcccaggcatctctgGGCGAGTATCTCTTTGAGCGCCTCACTCTGAAGCACGACTaagcctctgtgccttccaaggggctccctCCTCTGCTCTGCACCGACCgcctcagc | ||||
| *************************************************************************************************************** | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000047044 ENSRNOG00000029082 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042108 ENSRNOG00000029082 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049964 ENSRNOG00000029082 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............................................ | ENSRNOT00000054415 ENSRNOG00000036293 | ||||
| rat | ((..((((...((.(((((((((.......((((.(((......((((((((..........))))).)))..))).)))).......))))).)).))))..))))..)) | 0.480 -32.24 | |||
| rat | chromosome:1:169029811:169029921:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000054415|ENSRNOG00000036293 ## Same_strand|Boundary_coding|ENSRNOT00000047044|ENSRNOG00000029082 ## Same_strand|Exonic_coding|ENSRNOT00000049964|ENSRNOG00000029082 ## Same_strand|Intronic_coding|ENSRNOT00000049964|ENSRNOG00000029082 ## ENSRNOG00000029082|protein_coding|| ## ENSRNOG00000036293|miRNA|| |
miRNAunknown_lenNOK_nonpairedHIGH_bulgeHIGH (4 loci)
block360209 (miRNA) [miRNAunknown_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.109 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 26 | 2 | 3arm | 8 | nd | 0.44 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------ACAAAUG------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ------------------------------------------------------TACAAATGTGGTGGAATC-------------------------- | 18 | 1 | |
| rat | atcgtaattggacacgtagattctggcaagtccaccacaataggccacctgatcTACAAATGTGGTGGAATCaacaaaagaaccattgaaaagtatga | ||
| ************************************************************************************************** | |||
| .....................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000063520 ENSRNOG00000041767 | ||
| rat | .(((((..............((.((.....(((((((((.((((........))))....))))))))).....)).))..............))))) | 0.450 -18.19 |
| rat | chromosome:14:67224165:67224262:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063520|ENSRNOG00000041767 ## ENSRNOG00000041767|miRNA|| |
block647898 (miRNA) [miRNAunknown_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.398 | no | no | 0.61/0.61 | 18/18/0.00 | 0.0 | 0.0 | 8 | 0 | 6 | 0 | 8 | 26 | 3arm | 1 | nd | 0.33 | 4 | 8 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ------------------------------------------------------------------------------UCUCGCU------------------ | 8 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------------ATCTCGCTGGGGCCTACA-------- | 18 | 2 | 1 | 2 | 1 | 1 | 1 | |
| rat | acatctcctgaggtggtcctggatccctggagtcccagagtgaaagtccagctttagaatttgggtggggcaggctgATCTCGCTGGGGCCTACAgaaaatgt | |||||||
| ******************************************************************************************************* | ||||||||
| ...............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............ | ENSRNOT00000054515 ENSRNOG00000036400 | |||||||
| rat | ((((...(((....(((((((((((((((....((((((...((((.....))))....)))))).....))))..)))))....))))))..)))...)))) | 0.840 -31.90 | ||||||
| rat | chromosome:17:20033144:20033246:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054515|ENSRNOG00000036400 ## ENSRNOG00000036400|miRNA|| |
block2010885 (miRNA) [miRNAunknown_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.350 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 5 | 8 | 3arm | 1 | nd | 0.53 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------GGGCGAG---------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| --------------------------------------------TGGGCGAGTATCTCCTTGA----- | 19 | 1 | |
| rat | ggcaggaccacaaccagcgcagactggcatgatccagccatctcTGGGCGAGTATCTCCTTGAgtgcc | ||
| ******************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000009779 ENSRNOG00000024503 CT025539.18 | ||
| >>>>>>>>>>>>>>>>>>............................................................ | ENSRNOT00000044011 ENSRNOG00000029714 | ||
| ...>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000054618 ENSRNOG00000036511 | ||
| rat | (((((((.....((..((.((((.((((........))))..)))).))..))...)))).....))) | 0.610 -20.30 |
| rat | chromosome:6:36946371:36946438:1 | Same_strand|Boundary_non-coding|ENSRNOT00000035660|ENSRNOG00000024503 ## Same_strand|Exonic_non-coding|ENSRNOT00000054618|ENSRNOG00000036511 ## Same_strand|Intronic_coding|ENSRNOT00000009779|ENSRNOG00000024503 ## ENSRNOG00000024503|protein_coding|CT025539.18|4933425L03Rik protein [Source:UniProtKB/TrEMBL;Acc:Q6PGH6] ## ENSRNOG00000036511|miRNA|| |
block2247823 (miRNA) [miRNAunknown_lenNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.035 | no | no | 0.33/0.38 | 18/22/0.64 | 0.0 | 0.4 | 7 | 0 | 1 | 0 | 8 | 21 | 5arm | 1 | nd | 0.40 | 4 | 11 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------AUAGACA------------------------------------------------------------------------------------ | 7 | novel |
| seed | ------------GACAAAG--------------------------------------------------------------------------------- | 2 | novel |
| seed | -------------ACAAAGA-------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------AGACAAA---------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------GATAGACAAAGAACTGTACA------------------------------------------------------------------------ | 20 | 4 | |
| --------GATAGACAAAGAACTGTAC------------------------------------------------------------------------- | 19 | 3 | |
| ------------GACAAAGAACTGTACATTCTG------------------------------------------------------------------- | 21 | 1 | |
| -----------AGACAAAGAACTGTACATTCTG------------------------------------------------------------------- | 22 | 1 | |
| -----------AGACAAAGAACTGTACATTCT-------------------------------------------------------------------- | 21 | 1 | |
| ----------TAGACAAAGAACTGTACA------------------------------------------------------------------------ | 18 | 1 | |
| rat | ttctgtggGATAGACAAAGAACTGTACAttctggaagaaagacctacatagtgaaagtggctggggaagccaggggtgtgtgtgtgtgtgtctccagagg | ||
| **************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>........................................................................................... | ENSRNOT00000054628 ENSRNOG00000036521 | ||
| rat | (((((.((((((.(((....((...(((((((((........((..(((.......)))...)).....)))))).)))..)).))).))))))))))). | 0.410 -27.72 |
| rat | chromosome:7:112748741:112748840:1 | Same_strand|Boundary_non-coding|ENSRNOT00000054628|ENSRNOG00000036521 ## ENSRNOG00000036521|miRNA|| |
miRNAunknown_rep_Multihit_randfoldOK (4 loci)
block1913946 (miRNA) [miRNAunknown_rep_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | SINE,SINE/B4 | 0.35/0.38 | 20/22/1.00 | 0.3 | 1.3 | 3 | 0 | 2 | 0 | 38 | 0 | 3arm | 263 | nd | 0.00 | 0 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------AUAUGUA---------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------UAUGUAU--------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| --------------------------------------------------------TATATGTATGTGTGTGTGTG---------------------------------------- | 20 | 1 | - | |
| ---------------------------------------------------------ATATGTATGTGTGTGTGTGTG-------------------------------------- | 21 | - | 1 | |
| --------------------------------------------------------TATATGTATGTGTGTGTGTGTG-------------------------------------- | 22 | 1 | - | |
| rat | catttagattttatttggtgtttacacacacacacacacacacatacatatatatgTATATGTATGTGTGTGTGTGTGtacatgtgtacaataacaagatcactagggtgtacatg | |||
| ******************************************************************************************************************** | ||||
| ............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | ENSRNOT00000063355 ENSRNOG00000041602 | |||
| rat | (((.((.((((((((((.((((((((((.(((((((((((((((((((((((....)))))))))))))))))))))))...)))))).)))).)))).....)))))).)).))) | 0.900 -47.80 | ||
| rat | chromosome:6:15565406:15565521:-1 | Opposite_strand|Exonic_non-coding|ENSRNOT00000063355|ENSRNOG00000041602 ## ENSRNOG00000041602|miRNA|| ## {Repeats: RSINE1 2 165 -1 class=SINE,dust 15565444 15565466 0 class=dust,RSINE1 152 165 -1 class=SINE/B4} |
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