other hairpins
miRNAunknown_rep_lenNOK_Multihit_randfoldOK (4 loci)
block2447266 (miRNA) [miRNAunknown_rep_lenNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | LTR/ERVK | 0.25/0.26 | 19/20/0.50 | 0.5 | 0.0 | 2 | 0 | 2 | 0 | 24 | 0 | 3arm | 270 | nd | 0.10 | 1 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------AUAUACA------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------UAUACAU----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| --------------------------------------------------ATATACATATACACACACA------------------------ | 19 | - | 1 | |
| -------------------------------------------------TATATACATATACACACACA------------------------ | 20 | 1 | - | |
| rat | tggtatactcatgtatgagtgtatgtatgtgtgcatgtgtatatatataTATATACATATACACACACAcataatcatgtaaaaaaagaccac | |||
| ********************************************************************************************* | ||||
| ------------------------------------------------------------------------------------------------------- | ENSRNOT00000014519 ENSRNOG00000010911 RGD1311530_predicted | |||
| ..................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000063206 ENSRNOG00000041453 | |||
| rat | ((((.........(((((...(((((.((((((.(((((((((((....))))))))))).)))))).))))).))))).........)))). | 0.730 -32.07 | ||
| rat | chromosome:8:108565661:108565753:1 | Same_strand|Exonic_non-coding|ENSRNOT00000063206|ENSRNOG00000041453 ## Opposite_strand|Intronic_coding|ENSRNOT00000014519|ENSRNOG00000010911 ## ENSRNOG00000010911|protein_coding|RGD1311530_predicted| ## ENSRNOG00000041453|miRNA|| ## {Repeats: dust 108565700 108565712 0 class=dust,RMER12 775 795 -1 class=LTR/ERVK,(TATATG)n 2 51 1 class=Simple_repeat} |
novel_5varHIGH_mirtron (4 loci)
block1028354 [novel_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.59/0.70 | 20/22/1.00 | 1.5 | 0.5 | 2 | 0 | 2 | 0 | 9 | 2 | 3arm | 1 | 0 | 0.09 | 1 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------UCUUGCC--------------------- | 1 | novel | |
| seed | -------------------------------------------------------------UUCUCUU------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S1 | |||
| ---------------------------------------------------------------CTCTTGCCTCCCCACCCCAG--------- | 20 | 1 | - | |
| ------------------------------------------------------------TTTCTCTTGCCTCCCCACCCCA---------- | 22 | - | 1 | |
| rat | ctggcagaaggtatccctagctggaggtgggtcccaggctggcaagaaagggtagaaactTTTCTCTTGCCTCCCCACCCCAGgatatccag | |||
| ******************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000047173 ENSRNOG00000020332 Tnnt3 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000051921 ENSRNOG00000020332 Tnnt3 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000027563 ENSRNOG00000020332 Tnnt3 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000043833 ENSRNOG00000020332 Tnnt3 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000049930 ENSRNOG00000020332 Tnnt3 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000051425 ENSRNOG00000020332 Tnnt3 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000040598 ENSRNOG00000020332 Tnnt3 | |||
| rat | ((((......((((((.....(((.((((((....((((.((..(((((((.......))))))))).)))).))))))))))))))))))) | 0.420 -34.70 | ||
| rat | chromosome:1:202757606:202757697:1 | Same_strand|Intronic_coding|ENSRNOT00000051921|ENSRNOG00000020332 ## ENSRNOG00000020332|protein_coding|Tnnt3|Troponin T, fast skeletal muscle (TnTf) (Fast skeletal muscle troponin T) (fTnT). [Source:UniProtKB/Swiss-Prot;Acc:P09739] |
block1156195 [novel_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.344 | no | no | 0.48/0.57 | 21/23/1.00 | 1.7 | 1.0 | 3 | 0 | 1 | 0 | 8 | 1 | 3arm | 3 | 1 | 0.26 | 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------UAUUGAU--------------------- | 2 | novel |
| seed | -------------------------------------------CAGCCUA-------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| -----------------------------------------------CTATTGATGCCAACCACCTGA-------- | 21 | 2 | |
| ------------------------------------------GCAGCCTATTGATGCCAACCACC----------- | 23 | 1 | |
| rat | cccatggacttggtggtatcggtatggggttaggacctggagGCAGCCTATTGATGCCAACCACCTGAacaaaggc | ||
| **************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010809 ENSRNOG00000024645 | ||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000043570 ENSRNOG00000024645 | ||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000059658 ENSRNOG00000024645 | ||
| rat | ((..((.....((((((...(((((.((..((((.((....))...)))))).))))).))))))....))..)). | 0.630 -22.00 |
| rat | chromosome:2:77591303:77591378:-1 | Same_strand|Boundary_coding|ENSRNOT00000043570|ENSRNOG00000024645 ## Same_strand|Intronic_coding|ENSRNOT00000010809|ENSRNOG00000024645 ## ENSRNOG00000024645|protein_coding|| |
block2251393 [novel_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.334 | no | no | 0.48/0.50 | 21/24/1.00 | 2.5 | 1.0 | 2 | 0 | 2 | 0 | 21 | 10 | 3arm | 1 | 0 | 0.19 | 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CUCCACA--------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------CAUGCUU---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| -----------------------------------------------------------------------TCTCCACATGCTTTGCTTCTCCCT----------------------- | 24 | - | 1 | |
| ----------------------------------------------------------------------------ACATGCTTTGCTTCTCCCTAG--------------------- | 21 | 1 | - | |
| rat | ccaaacggtcagtttccttacctgcagagagggacaccaaagtagccaagcccttgaagactcaagtgtttTCTCCACATGCTTTGCTTCTCCCTAGgccttgtttgacttcactggg | |||
| ********************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000009544 ENSRNOG00000006940 Ncf4 | |||
| rat | (((...((((((........((((..((((((.....(((((((...((((.(((((....))))).))))........)))))))))))))..))))......))))))....))). | 0.640 -28.54 | ||
| rat | chromosome:7:116180077:116180194:1 | Same_strand|Intronic_coding|ENSRNOT00000009544|ENSRNOG00000006940 ## ENSRNOG00000006940|protein_coding|Ncf4|neutrophil cytosolic factor 4 Gene [Source:MGI (curated);Acc:Ncf4-001] |
block2470415 [novel_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.068 | no | no | 0.67/0.68 | 19/22/0.80 | 1.6 | 3.4 | 5 | 0 | 3 | 0 | 14 | 12 | 3arm | 1 | 0 | 0.26 | 3 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------CACUGCC---------------------------- | 4 | miR-324 | ||
| seed | ------------------------------------------------------------------------CCCACUG------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T5S2 | |||
| -------------------------------------------------------------------------CCACTGCCCTTCTCCCCCTAG--------------- | 21 | 1 | 1 | 1 | |
| -----------------------------------------------------------------------TCCCACTGCCCTTCTCCCC------------------- | 19 | - | - | 1 | |
| -------------------------------------------------------------------------CCACTGCCCTTCTCCCCCTAGG-------------- | 22 | - | 1 | - | |
| rat | gggggctgaggagtagggtcctgacagaggcaaaggggatcttgggagtgaggggcagcgcaccctgactcTCCCACTGCCCTTCTCCCCCTAGGcctttaagatcccg | ||||
| ************************************************************************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000015628 ENSRNOG00000011784 NP_001100351.1 | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000015689 ENSRNOG00000011784 NP_001100351.1 | ||||
| rat | (((..((((((..(((((....((.((.((((...((((......((((.((((((...)).)))).))))))))..))))))))...)))))..))))..))..))). | 0.940 -47.30 | |||
| rat | chromosome:9:6766054:6766162:-1 | Same_strand|Intronic_coding|ENSRNOT00000015689|ENSRNOG00000011784 ## Same_strand|Boundary_coding|ENSRNOT00000015628|ENSRNOG00000011784 ## ENSRNOG00000011784|protein_coding|NP_001100351.1|molybdenum cofactor synthesis 1 [Source:RefSeq_peptide;Acc:NP_001100351] |
novel_cloningHIGH_loopOverlap (4 loci)
block1002254 [novel_cloningHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.380 | no | no | 0.43/0.50 | 18/21/0.85 | 0.0 | 0.0 | 35 | 0 | 9 | 0 | 21 | -1 | 3arm_loop | 1 | nd | 0.25 | 2 | 54 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------------------CAGUGCA--------------------------------- | 54 | miR-148b/152 | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------TCAGTGCACTACAGACCTTT--------------------- | 20 | 3 | 8 | 9 | 13 | 5 | 2 | 2 | 2 | 1 | |
| --------------------------------------------TCAGTGCACTACAGACCTT---------------------- | 19 | - | - | 3 | 2 | 2 | - | - | - | - | |
| --------------------------------------------TCAGTGCACTACAGACCTTTA-------------------- | 21 | - | 1 | - | - | - | - | - | - | - | |
| --------------------------------------------TCAGTGCACTACAGACCT----------------------- | 18 | - | - | - | 1 | - | - | - | - | - | |
| rat | gtttgcaagaggttgaccacagggtccttgtttgatggctgtttTCAGTGCACTACAGACCTTTaaaagaccacttatacaaagc | ||||||||||
| ************************************************************************************* | |||||||||||
| rat | .((((.(((.((((......((((((..(((.((...((((....)))).))..))))))))).....)))).)))...)))).. | 0.760 -18.20 | |||||||||
| rat | chromosome:1:137075050:137075134:1 | intergenic |
block1094285 [novel_cloningHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.216 | no | no | 0.52/0.63 | 19/23/0.97 | 0.0 | 0.0 | 55 | 0 | 3 | 0 | 8 | -1 | 5arm | 1 | nd | 0.30 | 2 | 76 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------GCCAAGU---------------------------------------------------- | 75 | novel | ||
| seed | ----------CCAAGUG--------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --------TGCCAAGTGTCCTGTGACCCAAA------------------------------------- | 23 | 2 | 2 | 55 | |
| --------TGCCAAGTGTCCTGTGACCCA--------------------------------------- | 21 | 1 | - | 5 | |
| --------TGCCAAGTGTCCTGTGACCCAA-------------------------------------- | 22 | - | - | 6 | |
| --------TGCCAAGTGTCCTGTGACCC---------------------------------------- | 20 | 2 | - | 1 | |
| ---------GCCAAGTGTCCTGTGACCC---------------------------------------- | 19 | - | - | 1 | |
| --------TGCCAAGTGTCCTGTGACC----------------------------------------- | 19 | - | - | 1 | |
| rat | cccaccaaTGCCAAGTGTCCTGTGACCCAAAtagacttggggagcacagtatttctcagacttgaggg | ||||
| ******************************************************************** | |||||
| rat | ((((....((..(((((..(((((.(((((......)))))...))))))))))..))....)).)). | 0.660 -17.10 | |||
| rat | chromosome:20:5565798:5565865:1 | intergenic |
block1695816 [novel_cloningHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.367 | no | no | 0.55/0.56 | 18/20/0.88 | 0.0 | 0.0 | 50 | 0 | 4 | 0 | 14 | -2 | 3arm_loop | 1 | nd | 0.30 | 3 | 60 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------AGGCAUC-------------------------- | 60 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| -----------------------------------------------------TAGGCATCCAGCAGCACTTC-------------- | 20 | 1 | 1 | 1 | 50 | |
| -----------------------------------------------------TAGGCATCCAGCAGCACT---------------- | 18 | 1 | - | - | 6 | |
| rat | gcctctgcttcagtgttcacctgtgcttctgacccaaactatgcccccactgcTAGGCATCCAGCAGCACTTCgcctgccaaagggc | |||||
| *************************************************************************************** | ||||||
| rat | (((.((....(((.((......(((((.(((.........(((((..........))))).))).)))))...)))))....))))) | 0.910 -19.80 | ||||
| rat | chromosome:4:164247738:164247824:1 | intergenic |
block1093928 [novel_cloningHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.407 | no | no | 0.47/0.56 | 18/26/0.85 | 0.0 0.0 | 0.0 2.1 | 51 15 | 0 0 | 10 6 | 0 0 | 26 13 | -1 6 | 3arm 3arm | 1 1 | nd nd | 0.10 0.00 | 2 0 | 123 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------------------------CCAACCU-------------------------------------- | 92 | novel | |||||||||
| seed | -------------------------------------------------------------------CCUUGAU------------------------------- | 22 | novel | |||||||||
| seed | -------------------------------------------------------------CAACCUC------------------------------------- | 5 | novel | |||||||||
| seed | -----------------------------------------------------------UCCAACC--------------------------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------------------------CUUGAUU------------------------------ | 1 | novel | |||||||||
| seed | ------------------------------------------------------------------UCCUUGA-------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------TCCAACCTCCTTGATTCGCA-------------------------- | 20 | 9 | 6 | 4 | 5 | 1 | 2 | 2 | 3 | 51 | - | |
| -----------------------------------------------------------TCCAACCTCCTTGATTCGCATCCC---------------------- | 24 | - | - | - | - | - | 1 | - | 1 | 4 | - | |
| ------------------------------------------------------------------TCCTTGATTCGCATCCCAGGACTC--------------- | 24 | - | - | - | - | - | - | - | - | 5 | - | |
| ------------------------------------------------------------CCAACCTCCTTGATTCGCA-------------------------- | 19 | 1 | - | - | - | - | - | - | - | 4 | - | |
| ------------------------------------------------------------------TCCTTGATTCGCATCCCAGG------------------- | 20 | - | - | - | - | 1 | - | - | - | 3 | 1 | |
| ------------------------------------------------------------------TCCTTGATTCGCATCCCAGGACTCTC------------- | 26 | - | - | - | - | - | - | 1 | - | 3 | - | |
| ------------------------------------------------------------------TCCTTGATTCGCATCCCAGGAC----------------- | 22 | 1 | - | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------ATCCAACCTCCTTGATTCG---------------------------- | 19 | 1 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------TCCAACCTCCTTGATTCGC--------------------------- | 19 | - | - | 1 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------TCCTTGATTCGCATCCCAG-------------------- | 19 | - | - | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------------------------------TCCTTGATTCGCATCCCA--------------------- | 18 | - | - | - | - | - | - | - | - | 1 | 1 | |
| ------------------------------------------------------------------TCCTTGATTCGCATCCCAGGA------------------ | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------CCTTGATTCGCATCCCAGGA------------------ | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------CTCCTTGATTCGCATCCCAGGACTC--------------- | 25 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------TCCAACCTCCTTGATTCG---------------------------- | 18 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | ggtggatgacaccggatggaggacttgggtgtgcggggctcaggaggggcaggcccggaTCCAACCTCCTTGATTCGCAtcccaggactctctggcattgctgct | |||||||||||
| ********************************************************************************************************* | ||||||||||||
| rat | (((((.(((..(((((..(((..((((((.(((((((..(((((.((((..((.......))..)))))))))))))))))))))).))))))))..)))))))) | 0.500 -40.40 | ||||||||||
| rat | chromosome:20:5552809:5552913:1 | intergenic |
novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (4 loci)
block1767253 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.095 | no | no | 0.35/0.50 | 18/24/0.72 | 0.3 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 1.7 | 24 4 27 8 3 | 0 0 0 0 0 | 5 1 7 2 2 | 0 0 0 0 0 | 7 17 27 22 12 | 12 2 -12 -4 2 | 5arm 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.58 0.45 0.42 0.37 0.48 | 10 5 5 3 8 | 89 | 9 | 0 | 12 |
| reads | miRBase family seed | ||||||||||
| seed | ----------------------------CCUUCCA---------------------------------------------- | 39 | novel | ||||||||
| seed | --------CAGCCAU------------------------------------------------------------------ | 19 | novel | ||||||||
| seed | -----------------------------------------CACUAUG--------------------------------- | 8 | novel | ||||||||
| seed | ---------AGCCAUC----------------------------------------------------------------- | 8 | novel | ||||||||
| seed | ------------------CCUUAAA-------------------------------------------------------- | 5 | novel | ||||||||
| seed | -----------------------------------------------GUGGCUU--------------------------- | 3 | novel | ||||||||
| seed | ------CUCAGCC-------------------------------------------------------------------- | 2 | novel | ||||||||
| seed | ----------GCCAUCC---------------------------------------------------------------- | 1 | novel | ||||||||
| seed | --------------------------------------GAUCACU------------------------------------ | 1 | novel | ||||||||
| seed | -----------CCAUCCU--------------------------------------------------------------- | 1 | novel | ||||||||
| seed | -------------AUCCUCC------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------UCACUAU---------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------TCCTTCCACATGATCACTATGTGG------------------------------ | 24 | 1 | - | - | 1 | 1 | - | - | 27 | - | |
| -------TCAGCCATCCTCCTTAAAGA------------------------------------------------------ | 20 | 1 | - | - | - | - | - | 1 | 17 | - | |
| ----------------------------------------TCACTATGTGGCTTGTCTT---------------------- | 19 | - | - | - | - | - | - | - | 8 | - | |
| --------CAGCCATCCTCCTTAAAGA------------------------------------------------------ | 19 | - | - | - | - | - | - | - | 7 | - | |
| -----------------TCCTTAAAGATCCTTCCACA-------------------------------------------- | 20 | - | - | - | - | - | - | - | 4 | - | |
| ---------------------------TCCTTCCACATGATCACTA----------------------------------- | 19 | - | 1 | - | - | - | - | - | 2 | - | |
| ---------------------------TCCTTCCACATGATCACTATG--------------------------------- | 21 | - | - | - | - | - | - | - | 2 | - | |
| ---------------------------TCCTTCCACATGATCACT------------------------------------ | 18 | - | - | 2 | - | - | - | - | - | - | |
| -----TCTCAGCCATCCTCCTTAAAGA------------------------------------------------------ | 22 | - | - | - | - | - | 1 | - | 1 | - | |
| ---------------------------TCCTTCCACATGATCACTATGTG------------------------------- | 23 | - | - | - | - | - | - | 1 | 1 | - | |
| -----------------TCCTTAAAGATCCTTCCACATGA----------------------------------------- | 23 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------ATCACTATGTGGCTTGTCT----------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| --------CAGCCATCCTCCTTAAAG------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | |
| ----------GCCATCCTCCTTAAAGATC---------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------TGATCACTATGTGGCTTGTCT----------------------- | 21 | - | - | - | - | - | - | 1 | - | - | |
| ---------AGCCATCCTCCTTAAAGATC---------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------TGTGGCTTGTCTTAAACTTT--------------- | 20 | - | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------TGTGGCTTGTCTTAAACTT---------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ------------CATCCTCCTTAAAGATCCT-------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------TGTGGCTTGTCTTAAACTTTGGG------------ | 23 | - | - | - | - | - | - | - | 1 | - | |
| rat | ttgcctcTCAGCCATCCTCCTTAAAGATCCTTCCACATGATCACTATGTGGcttgtcttaaactttgggcctagtcccagt | ||||||||||
| ********************************************************************************* | |||||||||||
| rat | (((...((..(((..........(((((....(((((((.....)))))))...)))))........)))..))...))). | 0.450 -15.07 | |||||||||
| rat | chromosome:5:114564769:114564849:-1 | intergenic |
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