other hairpins
novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (4 loci)
sblock6696 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.067 | no | no | 0.42/0.60 | 18/24/0.73 | 0.2 0.0 0.0 0.0 0.0 0.9 | 1.0 0.2 0.0 0.5 0.0 1.0 | 4 12 1 16 7 7 | 0 0 0 0 0 0 | 1 4 1 4 1 2 | 0 0 0 0 0 0 | 3 15 22 46 35 8 | 31 21 16 -11 -4 19 | 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.45 0.52 0.55 0.52 0.37 0.42 | 4 7 7 6 3 4 | 63 | 6 | 0 | 17 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------------------GACAGGA------------------------------------------------------------ | 20 | novel | |||||
| seed | ----------------AGCAAAG------------------------------------------------------------------------------------------- | 18 | novel | |||||
| seed | -------------------------------------------------------------AAAGAGU---------------------------------------------- | 7 | novel | |||||
| seed | ------------------------------------------------------------------------------------AAGCCAG----------------------- | 5 | novel | |||||
| seed | ----GAGCUCC------------------------------------------------------------------------------------------------------- | 3 | novel | |||||
| seed | ----------------------------------------------------------------------------------------CAGAUCU------------------- | 1 | novel | |||||
| seed | -------------AGUAGCA---------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------AGGAGGU--------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------GCAAAGC------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ---------------UAGCAAA-------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------CACACAA------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ------------------CAAAGCA----------------------------------------------------------------------------------------- | 1 | miR-330* | |||||
| seed | --------------------------------------------------------------------------------------GCCAGAU--------------------- | 1 | novel | |||||
| seed | -----AGCUCCA------------------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | -------------------AAAGCAC---------------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| ----------------------------------------------TGACAGGAGGTCCCTAAAGAGTC--------------------------------------------- | 23 | - | 1 | 1 | - | 12 | - | |
| ---------------TAGCAAAGCACACAAGGACACT----------------------------------------------------------------------------- | 22 | 1 | - | - | - | 9 | 1 | |
| ------------------------------------------------------------TAAAGAGTCCTAAAGGTGG----------------------------------- | 19 | - | - | - | - | 7 | - | |
| ----------------------------------------------TGACAGGAGGTCCCTAAAGAG----------------------------------------------- | 21 | - | - | - | 1 | 4 | - | |
| ---TGAGCTCCAAAGTAGCAAAG------------------------------------------------------------------------------------------- | 20 | - | - | - | - | 3 | - | |
| -----------------------------------------------------------------------------------GAAGCCAGATCTTTGTAGCTGT--------- | 22 | - | - | - | - | 3 | - | |
| ---------------TAGCAAAGCACACAAGGACAC------------------------------------------------------------------------------ | 21 | - | - | - | - | 3 | - | |
| ---------------TAGCAAAGCACACAAGGA--------------------------------------------------------------------------------- | 18 | - | - | - | - | 2 | - | |
| ---------------TAGCAAAGCACACAAGGAC-------------------------------------------------------------------------------- | 19 | - | - | - | - | 2 | - | |
| -----------------------------------------------------------------------------------GAAGCCAGATCTTTGTAGC------------ | 19 | 2 | - | - | - | - | - | |
| ----------------------GCACACAAGGACACTAGGCC------------------------------------------------------------------------ | 20 | - | - | - | - | 1 | - | |
| -------------------------------------------------CAGGAGGTCCCTAAAGAG----------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ----------------------------------------------TGACAGGAGGTCCCTAAAGAGT---------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------------AGCCAGATCTTTGTAGCTGT--------- | 20 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------------------------CCAGATCTTTGTAGCTGTA-------- | 19 | - | - | - | - | 1 | - | |
| ------------------CAAAGCACACAAGGACACT----------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| --------------GTAGCAAAGCACACAAGGACACT----------------------------------------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| ------------AAGTAGCAAAGCACACAAGGACAC------------------------------------------------------------------------------ | 24 | - | - | - | - | 1 | - | |
| ----------------AGCAAAGCACACAAGGAC-------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| -----------------GCAAAGCACACAAGGACACT----------------------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | |
| ----GAGCTCCAAAGTAGCAAAGCACA--------------------------------------------------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| rat | ctctgagctccaaagTAGCAAAGCACACAAGGACACTaggccacccTGACAGGAGGTCCCTAAAGAGTCCTAAAGGTGGcccagaagccagatctttgtagctgtaaagaagag | |||||||
| ****************************************************************************************************************** | ||||||||
| rat | ((((...((....(((.((((((.......((...((.(((((((.....((((..((......)).))))...))))))).))...))....)))))).)))....)).)))) | 0.540 -31.30 | ||||||
| rat | chromosome:20:5504357:5504470:-1 | intergenic |
sblock7228 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.282 | no | no | 0.40/0.68 | 18/26/0.87 | 0.0 0.0 | 0.0 0.0 | 1 47 | 0 0 | 1 4 | 0 0 | 16 31 | -1 -18 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.32 0.81 | 2 9 | 63 | 4 | 0 | -3 |
| reads | miRBase family seed | |||||
| seed | --------------------------------GCUAAUU----------------------------------------------- | 54 | novel | |||
| seed | ------------------------------------------GCUGCCU------------------------------------- | 3 | novel | |||
| seed | -----------------------------------AAUUCAU-------------------------------------------- | 3 | novel | |||
| seed | -----------------CUGCCAG-------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------ACCCUGC---------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------UGCUAAU------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| -------------------------------TGCTAATTCATGCTGCCTTCT---------------------------------- | 21 | 2 | 1 | 47 | - | |
| -------------------------------TGCTAATTCATGCTGCCT------------------------------------- | 18 | - | - | 3 | - | |
| ----------------------------------TAATTCATGCTGCCTTCTTG-------------------------------- | 20 | - | - | 2 | - | |
| -----------------------------------------TGCTGCCTTCTTGGGACC--------------------------- | 18 | - | - | 2 | - | |
| -----------------------------------------TGCTGCCTTCTTGGGACCACTGC---------------------- | 23 | - | - | - | 1 | |
| ----------------------------------TAATTCATGCTGCCTTCTTGGGACC--------------------------- | 25 | - | - | 1 | - | |
| ----------------CCTGCCAGGGTACCCTGCT--------------------------------------------------- | 19 | - | - | 1 | - | |
| --------------------------TACCCTGCTAATTCATGCTG---------------------------------------- | 20 | 1 | - | - | - | |
| ------------------------------CTGCTAATTCATGCTGCCTTCTT--------------------------------- | 23 | - | - | 1 | - | |
| -------------------------------TGCTAATTCATGCTGCCTTCTTGGGA----------------------------- | 26 | - | - | 1 | - | |
| rat | gctgccccagccaaggcctgccagggtacccTGCTAATTCATGCTGCCTTCTtgggaccactgctggccctggaagcaaaggaagc | |||||
| ************************************************************************************** | ||||||
| rat | (((.((....(((.((((.((.(((((.(((.((........)).........)))))).)))).)))).))).......)).))) | 0.650 -28.30 | ||||
| rat | chromosome:20:5563258:5563343:1 | intergenic |
sblock9523 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.171 | no | no | 0.43/0.50 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 48 21 | 0 0 | 6 4 | 0 0 | 10 12 | -2 4 | 5arm_loop 3arm | 1 1 | nd nd | 0.42 0.38 | 4 3 | 86 | 7 | 5 | 1 |
| reads | miRBase family seed | ||||||||
| seed | -----------CUGCUAA---------------------------------------------------------- | 56 | novel | ||||||
| seed | --------------------------------------------UCCAUAG------------------------- | 23 | novel | ||||||
| seed | ---------------------------------------------CCAUAGG------------------------ | 4 | novel | ||||||
| seed | -------------------------------------------------AGGUAUG-------------------- | 3 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| ----------CCTGCTAATGCCTGTCTTCTGTCT------------------------------------------ | 24 | 2 | 3 | - | 1 | 1 | 48 | 1 | |
| -------------------------------------------TTCCATAGGTATGTCCAGAGT------------ | 21 | 1 | - | 1 | - | - | 21 | - | |
| --------------------------------------------TCCATAGGTATGTCCAGAGT------------ | 20 | - | - | - | - | - | 3 | 1 | |
| ------------------------------------------------TAGGTATGTCCAGAGTACCAACT----- | 23 | - | - | - | - | - | 3 | - | |
| rat | ggcctccaagCCTGCTAATGCCTGTCTTCTGTCTacccaacaaTTCCATAGGTATGTCCAGAGTaccaactagccc | ||||||||
| **************************************************************************** | |||||||||
| rat | (((......(((((...((((((((....(((.......))).....))))))))...))).))........))). | 0.730 -14.24 | |||||||
| rat | chromosome:5:143146413:143146488:-1 | intergenic |
novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (4 loci)
sblock11364 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.249 | no | no | 0.32/0.54 | 19/26/0.82 | 0.0 0.0 2.6 0.0 | 0.0 0.0 5.6 0.0 | 23 12 5 1 | 0 0 0 0 | 3 2 2 1 | 0 0 0 0 | 25 43 24 5 | 4 -14 1 31 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.45 0.55 0.39 0.42 | 2 4 4 3 | 50 | 4 | -2 | -2 |
| reads | miRBase family seed | |||||
| seed | --------------------------GCAAAGU--------------------------------------------------------------------------- | 27 | novel | |||
| seed | --------------------------------------------GCAAGGU--------------------------------------------------------- | 14 | novel | |||
| seed | -----------------------------------------------------------GAGAUUU------------------------------------------ | 3 | novel | |||
| seed | ---------------------------CAAAGUU-------------------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------------------------------CAAGGUG-------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------AAUGAGA--------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------UAAUGAG---------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------------------UUCUGGU---------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| -------------------------TGCAAAGTTGTTTGAAAGTG--------------------------------------------------------------- | 20 | 1 | 1 | - | 23 | |
| -------------------------------------------TGCAAGGTGTCTTAATGAGA--------------------------------------------- | 20 | 3 | - | - | 9 | |
| -------------------------------------------TGCAAGGTGTCTTAATGAG---------------------------------------------- | 19 | - | - | - | 2 | |
| --------------------------GCAAAGTTGTTTGAAAGTG--------------------------------------------------------------- | 19 | - | - | - | 2 | |
| ----------------------------------------------------------TGAGATTTGAAGGGCGTGGAGTG--------------------------- | 23 | - | - | - | 1 | |
| ----------------------------------------------------------TGAGATTTGAAGGGCGTGGAG----------------------------- | 21 | - | - | - | 1 | |
| -------------------------TGCAAAGTTGTTTGAAAGTGCA------------------------------------------------------------- | 22 | - | - | - | 1 | |
| -------------------------------------------------------TAATGAGATTTGAAGGGCGTG-------------------------------- | 21 | - | 1 | - | - | |
| ----------------------------------------------------------TGAGATTTGAAGGGCGTGGAGTGGAG------------------------ | 26 | - | - | - | 1 | |
| ------------------------------------------------------TTAATGAGATTTGAAGGGC----------------------------------- | 19 | - | - | - | 1 | |
| ------------------------------------------------------------------------------------GTTCTGGTGACATCTCTGG----- | 19 | - | - | 1 | - | |
| --------------------------------------------GCAAGGTGTCTTAATGAGA--------------------------------------------- | 19 | - | - | - | 1 | |
| -------------------------TGCAAAGTTGTTTGAAAGT---------------------------------------------------------------- | 19 | - | - | - | 1 | |
| rat | agggaggaagtgggctggtacccacTGCAAAGTTGTTTGAAAGTGCAAGGTGTCTTAATGAGAtttgaagggcgtggagtggaggttctggtgacatctctgggccct | |||||
| ************************************************************************************************************ | ||||||
| rat | ((((.(((..((.(((((.(((((((.((..(((.((..((.((..(((....))).))....))..)).))).)).)))))..)).)))))..))..)))...)))) | 0.630 -29.20 | ||||
| rat | chromosome:7:112743895:112744002:1 | intergenic |
sblock3408 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.754 | no | no | 0.37/0.53 | 18/25/0.83 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.7 0.0 0.0 0.0 | 29 3 1 1 1 | 0 0 0 0 0 | 7 2 1 1 1 | 0 0 0 0 0 | 7 46 41 33 0 | -3 -5 2 9 42 | 5arm_loop 3arm_loop 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.46 0.60 0.44 0.42 1.00 | 7 8 8 4 18 | 58 | 7 | 0 | 0 |
| reads | miRBase family seed | ||||||||
| seed | --------CGCAGUU---------------------------------------------------------------------------------- | 44 | novel | ||||||
| seed | --------------------------------GGACCUU---------------------------------------------------------- | 3 | novel | ||||||
| seed | -GCCUUCU----------------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | -----UCUCGCA------------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | -------------------------------------------------------------------------------AAAUGCA----------- | 1 | novel | ||||||
| seed | ----------------------------------------------ACAGAAU-------------------------------------------- | 1 | novel | ||||||
| seed | --CCUUCUC---------------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -----------AGUUGAU------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------GGACACU--------------------------------------------------- | 1 | novel | ||||||
| seed | ------CUCGCAG------------------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | ---CUUCUCG--------------------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| -------TCGCAGTTGATTACTTCCAAGTCA------------------------------------------------------------------ | 24 | 2 | 1 | 1 | - | 1 | - | 29 | |
| -------TCGCAGTTGATTACTTCCAAG--------------------------------------------------------------------- | 21 | - | - | - | - | 1 | 1 | 7 | |
| -------------------------------TGGACCTTGGACACTACAGA---------------------------------------------- | 20 | - | - | - | 1 | - | - | 1 | |
| ----TTCTCGCAGTTGATTACTT-------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 2 | |
| GGCCTTCTCGCAGTTGATT------------------------------------------------------------------------------ | 19 | 1 | - | - | - | - | - | 1 | |
| ---------------------------------------------TACAGAATTGTGGAGGACA--------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| ----------CAGTTGATTACTTCCAAGTCA------------------------------------------------------------------ | 21 | - | - | - | 1 | - | - | - | |
| ------------------------------------------------------------------------------TAAATGCAGATGATTCCCC | 19 | - | - | - | - | - | - | 1 | |
| -------TCGCAGTTGATTACTTCCA----------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -----TCTCGCAGTTGATTACTTCCAAGTC------------------------------------------------------------------- | 25 | - | - | - | - | - | - | 1 | |
| -------------------------------TGGACCTTGGACACTACAG----------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| --CCTTCTCGCAGTTGATTACT--------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | |
| --------------------------------------TGGACACTACAGAATTGT----------------------------------------- | 18 | - | - | - | - | - | - | 1 | |
| -GCCTTCTCGCAGTTGATTACT--------------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | |
| rat | ggccttcTCGCAGTTGATTACTTCCAAGTCAtggaccttggacactacagaattgtggaggacaaaatgagccctaaataaatgcagatgattcccc | ||||||||
| ************************************************************************************************* | |||||||||
| rat | (((((((.(((((((.......((((((........))))))........))))))))))).........)))........................ | 0.430 -17.56 | |||||||
| rat | chromosome:12:5613344:5613440:1 | intergenic |
sblock5040 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.382 | no | no | 0.33/0.50 | 19/23/0.91 | 0.4 0.0 | 0.0 0.0 | 36 4 | 0 0 | 4 2 | 0 0 | 28 16 | -7 7 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.52 0.40 | 5 4 | 58 | 4 | 7 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------------------------GAGCAUU-------------------------------------------------------- | 28 | novel | |||
| seed | ------------------------------AGCAUUG------------------------------------------------------- | 16 | novel | |||
| seed | -------------------------------GCAUUGC------------------------------------------------------ | 5 | novel | |||
| seed | ---------------------------------------------------------CCAAAGG---------------------------- | 5 | novel | |||
| seed | ------------------------------------GCACAUU------------------------------------------------- | 4 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ----------------------------TGAGCATTGCACATTCATTTAGA----------------------------------------- | 23 | - | 1 | 1 | 21 | |
| -----------------------------GAGCATTGCACATTCATTTAGA----------------------------------------- | 22 | 1 | - | - | 15 | |
| ------------------------------AGCATTGCACATTCATTTAGA----------------------------------------- | 21 | - | - | - | 5 | |
| ----------------------------TGAGCATTGCACATTCATT--------------------------------------------- | 19 | - | - | - | 5 | |
| --------------------------------------------------------ACCAAAGGCTCGACATCACA---------------- | 20 | 1 | - | - | 4 | |
| -----------------------------------TGCACATTCATTTAGATCCACAC---------------------------------- | 23 | - | - | - | 3 | |
| -----------------------------------TGCACATTCATTTAGATCCACA----------------------------------- | 22 | - | - | - | 1 | |
| rat | gggtttgttttgctttggttctgtgttcTGAGCATTGCACATTCATTTAGAtccacaccaaaggctcgacatcacatccaggctcgcagatc | |||||
| ******************************************************************************************** | ||||||
| rat | .(((((((...((.((((...((((...(((((.(((.....((.....)).......)))..)))))....)))).))))))..))))))) | 0.990 -20.30 | ||||
| rat | chromosome:17:17547197:17547288:-1 | intergenic |
sblock7221 [novel_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.44/0.71 | 18/25/0.81 | 0.0 0.0 0.6 | 0.0 0.0 1.4 | 1 54 5 | 0 0 0 | 1 7 2 | 0 0 0 | 4 17 5 | 14 -1 6 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.38 0.39 0.32 | 3 5 5 | 109 | 8 | 8 | 10 |
| reads | miRBase family seed | |||||||||
| seed | ------------------GCACACU------------------------------------------------------- | 94 | novel | |||||||
| seed | ----------------CUGCACA--------------------------------------------------------- | 5 | novel | |||||||
| seed | ---------------------------------------------------CUGAACC---------------------- | 3 | novel | |||||||
| seed | ----------------------ACUUUCC--------------------------------------------------- | 2 | novel | |||||||
| seed | ---------------UCUGCAC---------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------GAACCCU-------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------UGAACCC--------------------- | 1 | novel | |||||||
| seed | ---------------------CACUUUC---------------------------------------------------- | 1 | novel | |||||||
| seed | -----CCGGGGG-------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| -----------------TGCACACTTTCCAGATGAGCTCT---------------------------------------- | 23 | 7 | 5 | 1 | 1 | - | - | - | 54 | |
| -----------------TGCACACTTTCCAGATGAG-------------------------------------------- | 19 | - | - | 1 | - | - | 1 | 2 | 9 | |
| -----------------TGCACACTTTCCAGATGAGCT------------------------------------------ | 21 | - | - | - | - | - | - | - | 6 | |
| -----------------TGCACACTTTCCAGATGAGC------------------------------------------- | 20 | - | - | - | - | - | - | - | 3 | |
| ---------------TCTGCACACTTTCCAGATGAGCTCT---------------------------------------- | 25 | 2 | - | - | - | - | - | - | 1 | |
| -----------------TGCACACTTTCCAGATGAGCTC----------------------------------------- | 22 | - | - | - | 1 | - | - | 1 | 1 | |
| --------------------------------------------------TCTGAACCCTGAGCAGGCCACT-------- | 22 | - | - | - | - | - | - | - | 2 | |
| ---------------------CACTTTCCAGATGAGCTCT---------------------------------------- | 19 | - | - | - | - | - | - | - | 2 | |
| ---------------TCTGCACACTTTCCAGATGAGC------------------------------------------- | 22 | - | - | - | - | - | - | - | 2 | |
| ----CCCGGGGGCCTTCTGCACACT------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | |
| -----------------TGCACACTTTCCAGATGA--------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | |
| --------------TTCTGCACACTTTCCAGATGAG-------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------TCTGAACCCTGAGCAGGCC----------- | 19 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------CTGAACCCTGAGCAGGCCACTTGA----- | 24 | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------TGAACCCTGAGCAGGCCAC--------- | 19 | - | - | - | - | - | - | - | 1 | |
| --------------------ACACTTTCCAGATGAGCTCT---------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | |
| rat | cctccccgggggccttcTGCACACTTTCCAGATGAGCTCTatcagggctttctgaaccctgagcaggccacttgagcagg | |||||||||
| ******************************************************************************** | ||||||||||
| rat | (((...((((((((...(((.((.....((((.((((((.....)))))))))).....)).))))))).))))...))) | 0.960 -26.40 | ||||||||
| rat | chromosome:20:5561816:5561895:1 | intergenic |
novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (4 loci)
block881085 [novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.035 | no | no | 0.40/0.52 | 19/23/0.92 | 3.7 1.2 | 3.4 1.7 | 7 6 | 0 0 | 2 2 | 0 0 | 16 6 | -18 3 | 3arm_loop 3arm | 1 3 | nd nd | 0.55 0.50 | 5 7 | 13 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------CUUUCUC---------------------------------- | 3 | novel | ||
| seed | ----------------------------------------------------GCAUCUA--------------------- | 3 | novel | ||
| seed | ---------------------------------GCUUCUC---------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------CUGCAUC----------------------- | 2 | novel | ||
| seed | -------------------------------------------CUCUCCU------------------------------ | 1 | novel | ||
| seed | -----------------------------GAAUGCU-------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------UGCAUCU---------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| --------------------------------------TCTTTCTCTCCTCTGCATCT---------------------- | 20 | - | - | 3 | |
| -------------------------------------------------TCTGCATCTATTTCTTCCTG----------- | 20 | - | - | 2 | |
| ------------------------------------------TCTCTCCTCTGCATCTATTTCT---------------- | 22 | 1 | - | - | |
| ---------------------------------------------------TGCATCTATTTCTTCCTGG---------- | 19 | - | - | 1 | |
| ---------------------------------------------------TGCATCTATTTCTTCCTGGGGCC------ | 23 | - | - | 1 | |
| ----------------------------TGAATGCTTCTCTTTCTCTCC------------------------------- | 21 | 1 | - | - | |
| --------------------------------TGCTTCTCTTTCTCTCCTCTGCA------------------------- | 23 | 1 | - | - | |
| --------------------------------TGCTTCTCTTTCTCTCCTCT---------------------------- | 20 | - | - | 1 | |
| --------------------------------------------------CTGCATCTATTTCTTCCTGGG--------- | 21 | - | - | 1 | |
| ---------------------------------------------------TGCATCTATTTCTTCCTGGG--------- | 20 | - | 1 | - | |
| rat | cgaacttgttacatttttatactgcagtTGAATGCTTCTCTTTCTCTCCTCTGCATCTATTTCTTCCTGGGGCCagttct | ||||
| ******************************************************************************** | |||||
| rat | .(((((.((..((.....(((.(((((..((...............))..)))))..))).......))..)).))))). | 0.960 -13.56 | |||
| rat | chromosome:1:129002581:129002660:-1 | intergenic |
block1469678 [novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.044 | no | no | 0.55/0.64 | 18/25/0.77 | 2.1 | 2.0 | 13 | 0 | 3 | 0 | 6 | -21 | 3arm_loop | 1 | nd | 0.39 | 5 | 13 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------AGGACUC--------------------------- | 8 | novel | ||
| seed | ----------------GCUAGGA------------------------------ | 2 | novel | ||
| seed | ----------------------ACUCUCC------------------------ | 1 | novel | ||
| seed | -------ACACUGG--------------------------------------- | 1 | novel | ||
| seed | -------------------------CUCCUUG--------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| ------------------TAGGACTCTCCTTGGGCACAG-------------- | 21 | 1 | 1 | 3 | |
| ------------------TAGGACTCTCCTTGGGCACA--------------- | 20 | - | 2 | 1 | |
| ------GACACTGGGTGCTAGGACTCTCCTT---------------------- | 25 | - | 1 | - | |
| ---------------TGCTAGGACTCTCCTTGGGCACA--------------- | 23 | - | 1 | - | |
| ------------------------TCTCCTTGGGCACAGCCCA---------- | 19 | 1 | - | - | |
| ---------------------GACTCTCCTTGGGCACAGCCCA---------- | 22 | - | 1 | - | |
| ---------------TGCTAGGACTCTCCTTGG-------------------- | 18 | - | - | 1 | |
| rat | gttccaGACACTGGGTGCTAGGACTCTCCTTGGGCACAGCCCAtacctgggat | ||||
| ***************************************************** | |||||
| rat | (((((((....(((((((((((.....)))..)))...)))))...))))))) | 0.960 -18.90 | |||
| rat | chromosome:3:76949443:76949495:1 | intergenic |
block713072 [novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.567 | no | no | 0.35/0.42 | 19/25/0.80 | 1.7 | 0.0 | 16 | 0 | 4 | 0 | 10 | -3 | 3arm | 1 | nd | 0.48 | 4 | 20 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------------GAAUCAA---------------------- | 7 | novel | |||
| seed | ---------------------------------CAAUGAA-------------------------- | 5 | novel | |||
| seed | ----------------------------------AAUGAAU------------------------- | 4 | novel | |||
| seed | --------------------------------------AAUCAAU--------------------- | 3 | novel | |||
| seed | -----------------------------GAAUCAA------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ------------------------------------TGAATCAATAGCTCAGTCTC---------- | 20 | - | - | 1 | 6 | |
| ---------------------------------CAATGAATCAATAGCTCAGTCTC---------- | 23 | - | - | - | 4 | |
| --------------------------------TCAATGAATCAATAGCTCAGTCTC---------- | 24 | 1 | - | - | 3 | |
| -------------------------------------GAATCAATAGCTCAGTCTC---------- | 19 | - | - | - | 3 | |
| ----------------------------GGAATCAATGAATCAATAGCTCAGT------------- | 25 | - | - | - | 1 | |
| --------------------------------TCAATGAATCAATAGCTCAG-------------- | 20 | - | 1 | - | - | |
| rat | ccttgggggttgggaatgagagtggcgtggaaTCAATGAATCAATAGCTCAGTCTCccggaacagg | |||||
| ****************************************************************** | ||||||
| rat | .((((....((((((.((((..((.(((.......)))...))....))))...))))))..)))) | 0.970 -15.40 | ||||
| rat | chromosome:18:63573715:63573780:-1 | intergenic |
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