other hairpins
novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (4 loci)
block1060581 [novel_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.279 | no | no | 0.30/0.43 | 19/25/0.83 | 4.7 0.0 | 5.7 1.2 | 7 5 | 0 0 | 2 3 | 0 0 | 12 3 | -22 9 | 3arm 3arm | 1 1 | nd nd | 0.43 0.40 | 3 4 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------AUGAACA------------------ | 5 | novel | |||
| seed | ---------------------------------UGGAUGA-------------------------------------- | 3 | novel | |||
| seed | --------------------------------------------AUAACCA--------------------------- | 2 | novel | |||
| seed | -------------------------------------UGAGCAU---------------------------------- | 1 | novel | |||
| seed | ----------------------------------------GCAUAUA------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ----------------------------------------------------TATGAACAAGAGGGTCTTTCCTT--- | 23 | - | 1 | - | 2 | |
| --------------------------------GTGGATGAGCATATAACCACT------------------------- | 21 | - | - | - | 2 | |
| ----------------------------------------------------TATGAACAAGAGGGTCTTTC------ | 20 | - | - | 1 | 1 | |
| --------------------------------GTGGATGAGCATATAACCA--------------------------- | 19 | - | - | - | 1 | |
| -------------------------------------------TATAACCACTATGAACAAGAGGG------------ | 23 | 1 | - | - | - | |
| ------------------------------------ATGAGCATATAACCACTATGAACAA----------------- | 25 | - | - | - | 1 | |
| -------------------------------------------TATAACCACTATGAACAAGA--------------- | 20 | - | - | - | 1 | |
| ---------------------------------------AGCATATAACCACTATGAACA------------------ | 21 | - | - | - | 1 | |
| rat | acaataggacagacgtgattattgccagtagtGTGGATGAGCATATAACCACTATGAACAAGAGGGTCTTTCCTTggt | |||||
| ****************************************************************************** | ||||||
| rat | ((...((((.((((.......(((...((((((...(((....)))...))))))...)))....)))).))))..)) | 0.850 -14.80 | ||||
| rat | chromosome:20:5510066:5510143:-1 | intergenic |
novel_cloningOK_loopOverlap_bulgeHIGH (4 loci)
block1413600 [novel_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.218 | no | no | 0.35/0.37 | 19/23/0.94 | 0.0 | 0.0 | 11 | 0 | 3 | 0 | 11 | -2 | 3arm | 1 | nd | 0.30 | 4 | 16 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------UUUCUGA-------------------------- | 15 | novel | ||
| seed | ------------------------------------------------------GACUUCC--------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------TTTTCTGACTTCCTTTATGCAGT----------- | 23 | 3 | 1 | 11 | |
| -----------------------------------------------------TGACTTCCTTTATGCAGTA---------- | 19 | - | 1 | - | |
| rat | ttttaatgagatattttctataacatggttgaactttgctttaaaattTTTTCTGACTTCCTTTATGCAGTatcccattaaa | ||||
| ********************************************************************************** | |||||
| rat | .(((((((.((((((...(((((...(((((((.................))).))))....))))).)))))).))))))) | 0.940 -9.83 | |||
| rat | chromosome:3:141081769:141081850:-1 | intergenic |
block208927 [novel_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.188 | no | no | 0.28/0.50 | 18/23/0.87 | 2.0 0.0 | 0.5 0.0 | 2 19 | 0 0 | 1 2 | 0 0 | 24 15 | -19 -1 | 3arm_loop 3arm_loop | 1 1 | nd nd | 0.32 0.26 | 5 5 | 23 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------GCUAAGA------------------------------ | 21 | novel | |
| seed | ---------------------------------------GCCCCAG--------------------------------------- | 1 | novel | |
| seed | -------------------------------------------CAGAUGC----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------------------------------------------TGCTAAGATCTCTTTAAAGTCTC--------------- | 23 | - | 19 | |
| ------------------------------------------CCAGATGCTAAGATCTCTT------------------------ | 19 | - | 1 | |
| --------------------------------------AGCCCCAGATGCTAAGATCTCT------------------------- | 22 | - | 1 | |
| -----------------------------------------------TGCTAAGATCTCTTTAAAG------------------- | 19 | 1 | - | |
| -----------------------------------------------TGCTAAGATCTCTTTAAA-------------------- | 18 | - | 1 | |
| rat | ctcctggaagatttccatctttataggagccgtctctgagccccagaTGCTAAGATCTCTTTAAAGTCTCcgaaacgttctggag | |||
| ************************************************************************************* | ||||
| rat | ((((.((((..((((...(((((.(((((..((((...(((.......))).)))))))))))))).....))))..)))))))) | 0.560 -20.10 | ||
| rat | chromosome:12:5609944:5610028:1 | intergenic |
block713207 [novel_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.515 | no | no | 0.26/0.32 | 19/22/0.75 | 0.0 0.0 | 0.0 0.0 | 6 2 | 0 0 | 2 1 | 0 0 | 40 30 | -2 8 | 3arm 3arm | 1 1 | nd nd | 0.41 0.23 | 4 4 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------AGGAUGU------------------------------------------------------ | 6 | novel | |
| seed | -----------------------------------------------------------AUGUGUU--------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------GAUGUGU---------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------------AUUUGAU-------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------------------------------------------CAGGATGTGTTATTTGATTAAC---------------------------------------- | 22 | - | 6 | |
| -----------------------------------------------------------------TATTTGATTAACGCGGTGTTTT------------------------------ | 22 | - | 2 | |
| ----------------------------------------------------------GATGTGTTATTTGATTAAC---------------------------------------- | 19 | 1 | 1 | |
| ---------------------------------------------------------GGATGTGTTATTTGATTAA----------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------GGATGTGTTATTTGATTAAC---------------------------------------- | 20 | - | 1 | |
| rat | tgtgtcccaggccagagatcacaaatgaacacactgtatgtcgaagccagccagcCAGGATGTGTTATTTGATTAACGCGGTGTTTTaggaaaactcacattggccatagatgtcaa | |||
| ********************************************************************************************************************* | ||||
| rat | ((((((...((((((((........((((.(((((((..((((((((((.((.....)).)).))..))))))....)))))))))))......)))....)))))...)))).)). | 0.640 -26.54 | ||
| rat | chromosome:18:63578387:63578503:-1 | intergenic |
block1094041 [novel_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.019 | no | no | 0.45/0.48 | 19/23/0.92 | 0.0 | 0.0 | 7 | 0 | 3 | 0 | 9 | -4 | 5arm_loop | 1 | nd | 0.26 | 5 | 13 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------AGGAAGA--------------------------------------------------- | 13 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ---------TAGGAAGATTCTATGGGGCTCTC------------------------------------ | 23 | 2 | - | 7 | |
| ---------TAGGAAGATTCTATGGGGCTC-------------------------------------- | 21 | 1 | 1 | - | |
| ---------TAGGAAGATTCTATGGGGCT--------------------------------------- | 20 | - | - | 1 | |
| ---------TAGGAAGATTCTATGGGGC---------------------------------------- | 19 | - | - | 1 | |
| rat | ggcaaagccTAGGAAGATTCTATGGGGCTCTCggcccagtagggtttttcagttcccagtgggcagcc | ||||
| ******************************************************************** | |||||
| rat | (((...(((((((((((((((((.((((.....)))).)))))))))))).........))))).))) | 0.560 -27.40 | |||
| rat | chromosome:20:5556732:5556799:1 | intergenic |
novel_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (4 loci)
block1600433 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.309 | no | no | 0.38/0.63 | 19/24/0.75 | 0.0 3.0 | 0.0 4.5 | 4 4 | 0 0 | 2 2 | 0 0 | 33 31 | -6 -21 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.41 0.37 | 4 4 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------UCACUUU----------------------------------------------------------- | 5 | novel | ||
| seed | -----------------------------------CACUUUU---------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------CCUCUUG---------------------------------------------- | 2 | novel | ||
| seed | ------------------------------UUAUUCA--------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------GCUCCUC------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------CUUGGCG------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S1 | |||
| ---------------------------------TTCACTTTTCTGCTCCTCTTGG--------------------------------------------- | 22 | - | - | 4 | |
| -------------------------------------------TGCTCCTCTTGGCGGCAAG-------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------TTCACTTTTCTGCTCCTCTTG---------------------------------------------- | 21 | 1 | - | - | |
| -----------------------------CTTATTCACTTTTCTGCTCCTCTT----------------------------------------------- | 24 | - | - | 1 | |
| ----------------------------------------------TCCTCTTGGCGGCAAGGAA----------------------------------- | 19 | - | 1 | - | |
| ----------------------------------TCACTTTTCTGCTCCTCTT----------------------------------------------- | 19 | - | - | 1 | |
| ----------------------------------------------TCCTCTTGGCGGCAAGGAACTGTC------------------------------ | 24 | - | - | 1 | |
| ----------------------------------TCACTTTTCTGCTCCTCTTG---------------------------------------------- | 20 | - | - | 1 | |
| -------------------------------------------------TCTTGGCGGCAAGGAACTGT------------------------------- | 20 | - | - | 1 | |
| rat | gtggcattcaaacttctgctcaattgtttcttaTTCACTTTTCTGCTCCTCTTGGcggcaaggaactgtcagctcaactttatatgaagggactgtcatg | ||||
| **************************************************************************************************** | |||||
| rat | ((((((.((...((((.........(((.......((.(((..((((((....)).))))..))).)).......))).......)))).)).)))))). | 0.860 -20.83 | |||
| rat | chromosome:4:164237810:164237909:-1 | intergenic |
block1688399 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.519 | no | no | 0.48/0.61 | 18/23/0.90 | 0.0 1.3 | 0.0 1.7 | 6 3 | 0 0 | 2 2 | 0 0 | 12 22 | 4 -8 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.35 0.35 | 5 4 | 10 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------GACAGCG---------------------------------------------------------------------- | 6 | novel | |||
| seed | -----------------------GGGGAGA------------------------------------------------------------ | 2 | novel | |||
| seed | -------------------GCAGGGG---------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------AGAAACC-------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T2S2 | T5S2 | |||
| ------------AGACAGCGCAGGGGGAGAAACCA------------------------------------------------------- | 23 | - | 2 | - | 4 | |
| ----------------------GGGGGAGAAACCATAGCACA------------------------------------------------ | 20 | 2 | - | - | - | |
| ------------------CGCAGGGGGAGAAACCAT------------------------------------------------------ | 18 | - | 1 | - | - | |
| --------------------------GAGAAACCATAGCACATCGTC------------------------------------------- | 21 | - | - | 1 | - | |
| rat | gttggatttgccAGACAGCGCAGGGGGAGAAACCATAGCACAtcgtcttgattgtcctctcccccagtgaccaagagctagagacccggc | |||||
| ****************************************************************************************** | ||||||
| ---------------------------------------------------------------------------------------------------- | ENSRNOT00000018101 ENSRNOG00000013526 Rassf4 | |||||
| ---------------------------------------------------------------------------------------------------- | ENSRNOT00000018123 ENSRNOG00000013526 Rassf4 | |||||
| rat | (((((.(((((.......(((.((((((((.((((..((.....))..))...))..)))))))).))).......)).)))...))))) | 0.950 -25.24 | ||||
| rat | chromosome:4:153000757:153000846:1 | Opposite_strand|Intronic_coding|ENSRNOT00000018123|ENSRNOG00000013526 ## ENSRNOG00000013526|protein_coding|Rassf4|Ras association domain-containing protein 4. [Source:UniProtKB/Swiss-Prot;Acc:Q566C5] |
block2153202 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.022 | no | no | 0.52/0.59 | 19/25/0.83 | 0.0 1.6 0.0 | 0.0 1.4 0.0 | 1 10 1 | 0 0 0 | 1 5 1 | 0 0 0 | 30 39 18 | -8 -18 1 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.41 0.40 0.36 | 4 4 5 | 12 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------AGCCAUG------------------------------------------ | 4 | novel | ||||
| seed | ----------------------------------------UGCAGCC--------------------------------------------- | 4 | novel | ||||
| seed | -----------------------------------------GCAGCCA-------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------CUUCGUC----------------------------------- | 1 | novel | ||||
| seed | -------------------------------CGUGCGA------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S2 | T4S1 | T5S1 | |||
| ---------------------------------------TTGCAGCCATGCTTCGTCACT-------------------------------- | 21 | 1 | - | 1 | - | 1 | |
| ------------------------------------------CAGCCATGCTTCGTCACTAC------------------------------ | 20 | - | - | - | - | 3 | |
| ----------------------------------------TGCAGCCATGCTTCGTCACT-------------------------------- | 20 | - | - | - | 1 | 1 | |
| ------------------------------------------CAGCCATGCTTCGTCACTA------------------------------- | 19 | - | 1 | - | - | - | |
| -------------------------------------------------GCTTCGTCACTACGCCATCACCATC------------------ | 25 | - | - | - | - | 1 | |
| ---------------------------------------TTGCAGCCATGCTTCGTCAC--------------------------------- | 20 | - | - | - | - | 1 | |
| ------------------------------TCGTGCGACTTGCAGCCATGCT---------------------------------------- | 22 | - | - | - | - | 1 | |
| rat | gtctcttggaactcacttagtggctggcgcTCGTGCGACTTGCAGCCATGCTTCGTCACTACGCCATCACCATCtctccactcctgaagaca | ||||||
| ******************************************************************************************** | |||||||
| rat | ((((...(((.........((((.(((((...((((((...(((....))).))).)))..)))))))))...........)))...)))). | 0.950 -26.45 | |||||
| rat | chromosome:7:116619523:116619614:-1 | intergenic |
block1060499 [novel_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.314 | no | no | 0.45/0.61 | 19/25/0.86 | 0.0 4.7 | 0.0 4.7 | 1 13 | 0 0 | 1 2 | 0 0 | 20 31 | 13 -8 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.40 0.40 | 7 4 | 14 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------AUUAGUG----------------------------------------------------------------------------- | 4 | novel | |
| seed | --------------------------------------GUGAGUG----------------------------------------------------------------------- | 3 | novel | |
| seed | -----------------------------------AGUGUGA-------------------------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------GAGUGUC--------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------CACGGAG--------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------AGUGCCG---------------------------------------------------------------------------------------- | 1 | miR-292 | |
| seed | -------------------------------------UGUGAGU------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------GUGUCAC------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------TATTAGTGTGAGTGTCACGGAG--------------------------------------------------------------- | 22 | - | 3 | |
| -------------------------------------TGTGAGTGTCACGGAGCAGCCATC------------------------------------------------------- | 24 | - | 1 | |
| -------------------------------------TGTGAGTGTCACGGAGCAGCCA--------------------------------------------------------- | 22 | - | 1 | |
| ----------------------------------TAGTGTGAGTGTCACGGAGCAG------------------------------------------------------------ | 22 | - | 1 | |
| ------------------------------------GTGTGAGTGTCACGGAGCAGCCA--------------------------------------------------------- | 23 | - | 1 | |
| ----------------------------------TAGTGTGAGTGTCACGGAG--------------------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------TCACGGAGCAGCCATCACTGA-------------------------------------------------- | 21 | - | 1 | |
| -------------------------------TATTAGTGTGAGTGTCACGGAGC-------------------------------------------------------------- | 23 | 1 | - | |
| --------------------GAGTGCCGGTCTATTAGTGTGAGTG----------------------------------------------------------------------- | 25 | - | 1 | |
| -----------------------------------------AGTGTCACGGAGCAGCCATCACT---------------------------------------------------- | 23 | - | 1 | |
| -------------------------------------TGTGAGTGTCACGGAGCAGCCAT-------------------------------------------------------- | 23 | - | 1 | |
| ---------------------------------------TGAGTGTCACGGAGCAGCCA--------------------------------------------------------- | 20 | - | 1 | |
| rat | aagagcgagcgggccagtggGAGTGCCGGTCTATTAGTGTGAGTGTCACGGAGCAGCCATCACTGAggccagccatgacatcagagagattgtgtaagaaaagagcctgcagcctt | |||
| ******************************************************************************************************************** | ||||
| rat | (((.((..((((((.........(((((((((.......(((.(((((.((....(((........)))...)).))))))))...)))))).)))........)))))).))))) | 0.980 -34.63 | ||
| rat | chromosome:20:5507133:5507248:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_mirtron (4 loci)
sblock1029 [novel_cloningOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.122 | no | no | 0.50/0.58 | 18/23/0.80 | 0.2 0.0 | 1.0 0.4 | 4 9 | 0 0 | 4 6 | 0 0 | 31 27 | 2 2 | 5arm 3arm | 1 1 | 41 0 | 0.15 0.16 | 2 2 | 25 | 6 | 0 | -1 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------------------------------CUACCUC---------------------------------------- | 19 | novel | |||||
| seed | --------------------------------GUGUGGG--------------------------------------------------------------------------------- | 3 | novel | |||||
| seed | ------------------------------------------------------------------------CCUACCU----------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------UGUGGGU-------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T5S2 | |||
| ------------------------------------------------------------------------CCTACCTCTTGCCTTCCACAG--------------------------- | 21 | 4 | 3 | - | 1 | 1 | 1 | |
| ------------------------------------------------------------------------CCTACCTCTTGCCTTCCACA---------------------------- | 20 | 1 | 1 | - | - | 1 | - | |
| ------------------------------------------------------------------------CCTACCTCTTGCCTTCCAC----------------------------- | 19 | - | 2 | - | - | - | 1 | |
| ------------------------------------------------------------------------CCTACCTCTTGCCTTCCACAGT-------------------------- | 22 | - | 1 | 1 | - | - | - | |
| -------------------------------GGTGTGGGTAGCAAAGGTAG--------------------------------------------------------------------- | 20 | 1 | - | - | - | 1 | - | |
| -----------------------------------------------------------------------ACCTACCTCTTGCCTTCCACA---------------------------- | 21 | - | - | - | - | - | 1 | |
| -------------------------------GGTGTGGGTAGCAAAGGTA---------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | |
| --------------------------------GTGTGGGTAGCAAAGGTAGA-------------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------CCTACCTCTTGCCTTCCA------------------------------ | 18 | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------ACCTACCTCTTGCCTTCCACAGT-------------------------- | 23 | 1 | - | - | - | - | - | |
| rat | ctctgttgaatggtatagtgagttgtgagtcggtgtgggtagcaaaggtagatctaatcatagtaaaactgaCCTACCTCTTGCCTTCCACAGtgagccatctctatggatttggactga | |||||||
| ************************************************************************************************************************ | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000054793 ENSRNOG00000012036 Pcsk5 | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000016164 ENSRNOG00000012036 Pcsk5 | |||||||
| rat | .((.(((.((...(((((.((...((...(((.((((((..((((((((((.((................)).)))))).))))..)))))).)))))..)).)))))...)).))).)) | 0.970 -33.69 | ||||||
| rat | chromosome:1:221154318:221154437:-1 | Same_strand|Boundary_coding|ENSRNOT00000054793|ENSRNOG00000012036 ## Same_strand|Intronic_coding|ENSRNOT00000016164|ENSRNOG00000012036 ## ENSRNOG00000012036|protein_coding|Pcsk5|Proprotein convertase subtilisin/kexin type 5 precursor (EC 3.4.21.-) (Proprotein convertase PC5) (Subtilisin/kexin-like protease PC5) (rPC5) (PC6) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:P41413] |
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