other hairpins
novel_cloningOK_multiarm_DicerNOK_mirtron (4 loci)
sblock10565 [novel_cloningOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.122 | no | no | 0.70/0.85 | 19/24/0.78 | 0.8 0.1 | 1.5 0.2 | 4 14 | 0 0 | 4 7 | 0 0 | 16 33 | 1 3 | 5arm 3arm | 1 1 | 31 0 | 0.17 0.21 | 3 3 | 18 | 8 | 2 | 0 |
| reads | miRBase family seed | |||||||||
| seed | ----------------------------------------------------GACCCGC---------------------------------------------- | 12 | novel | |||||||
| seed | ------------------UGCGGGG-------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | -----------------------------------------------------ACCCGCC--------------------------------------------- | 2 | novel | |||||||
| seed | -----------------AUGCGGG--------------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| ---------------------------------------------------TGACCCGCCCCACCCCGCAG---------------------------------- | 20 | 2 | 3 | 1 | 1 | 1 | - | 2 | - | |
| ---------------------------------------------------TGACCCGCCCCACCCCGCA----------------------------------- | 19 | - | 1 | - | - | - | - | - | 1 | |
| -----------------ATGCGGGGTCCCGTGGGTGCA------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------GACCCGCCCCACCCCGCAGG--------------------------------- | 20 | - | - | 1 | - | - | - | - | - | |
| -----------------ATGCGGGGTCCCGTGGGTG--------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | |
| ----------------CATGCGGGGTCCCGTGGGTGCAGT----------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------GACCCGCCCCACCCCGCAG---------------------------------- | 19 | - | - | 1 | - | - | - | - | - | |
| -----------------ATGCGGGGTCCCGTGGGTGCAGT----------------------------------------------------------------- | 23 | - | - | 1 | - | - | - | - | - | |
| rat | tgtggaaggctggggtCATGCGGGGTCCCGTGGGTGCAGTtaccagagagcTGACCCGCCCCACCCCGCAGGaggaggatgaccatcgcacagagcctggagcat | |||||||||
| ********************************************************************************************************* | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000027634 ENSRNOG00000020383 Dapk3 | |||||||||
| rat | (((...((((((((((((((((((((...((((((.(((((.......)))))))))))...)))))))).........))))).))......)))))...))). | 0.450 -44.10 | ||||||||
| rat | chromosome:7:10008666:10008770:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000061103|ENSRNOG00000020383 ## Same_strand|Intronic_coding|ENSRNOT00000027634|ENSRNOG00000020383 ## Same_strand|Boundary_coding|ENSRNOT00000027634|ENSRNOG00000020383 ## ENSRNOG00000020383|protein_coding|Dapk3|Death-associated protein kinase 3 (EC 2.7.11.1) (DAP kinase 3) (DAP- like kinase) (Dlk) (ZIP-kinase). [Source:UniProtKB/Swiss-Prot;Acc:O88764] |
sblock2700 [novel_cloningOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.793 | no | no | 0.55/0.70 | 19/23/0.70 | 0.0 0.0 | 0.0 1.9 | 1 9 | 0 0 | 1 5 | 0 0 | 20 20 | 8 5 | 5arm 3arm | 1 1 | 38 0 | 0.39 0.15 | 4 2 | 10 | 6 | 2 | 4 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------------------GUCACUU----------------------------------- | 9 | novel | |||||
| seed | ---------------------GGGCCGC--------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | |||
| ------------------------------------------------------------TGTCACTTGCCCTGTTCCC------------------------ | 19 | - | 2 | - | - | 1 | - | |
| ------------------------------------------------------------TGTCACTTGCCCTGTTCCCAGTC-------------------- | 23 | 2 | - | - | - | - | - | |
| ------------------------------------------------------------TGTCACTTGCCCTGTTCCCAGT--------------------- | 22 | - | - | 2 | - | - | - | |
| ------------------------------------------------------------TGTCACTTGCCCTGTTCCCAG---------------------- | 21 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------TGTCACTTGCCCTGTTCCCA----------------------- | 20 | - | - | - | 1 | - | - | |
| --------------------AGGGCCGCAGAGCCTGTGACCGT------------------------------------------------------------ | 23 | - | - | - | - | - | 1 | |
| rat | ccactggtctagaggttttgAGGGCCGCAGAGCCTGTGACCGTtgctaaggacaccctgcTGTCACTTGCCCTGTTCCCAGTCcctgaagaggaaggagaagg | |||||||
| ******************************************************************************************************* | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000003933 ENSRNOG00000002894 NM_001105807.1 | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000040035 ENSRNOG00000002894 NM_001105807.1 | |||||||
| rat | ...((..(((..(((..(((.(((..((((.((..(((((....((..(((....))))).)))))..)).))))))))))..)))..)))...))....... | 0.430 -29.50 | ||||||
| rat | chromosome:10:62158202:62158304:1 | Same_strand|Intronic_coding|ENSRNOT00000040035|ENSRNOG00000002894 ## Same_strand|Boundary_coding|ENSRNOT00000003933|ENSRNOG00000002894 ## ENSRNOG00000002894|protein_coding|NM_001105807.1|max binding protein (predicted) (Mnt_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001105807] |
sblock9299 [novel_cloningOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.39/0.67 | 18/24/0.83 | 0.3 0.2 | 0.3 0.3 | 3 12 | 0 0 | 2 4 | 0 0 | 28 27 | 7 5 | 5arm 3arm | 1 1 | 42 2 | 0.14 0.17 | 1 3 | 24 | 4 | -1 | 0 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------UGUACUC------------------------------------------ | 15 | novel | |||
| seed | -------------------------------------------------------------------AUGUACU------------------------------------------- | 6 | novel | |||
| seed | -----------------------------CGGGUGG--------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------------GGGUGGA-------------------------------------------------------------------------------- | 1 | miR-363* | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T4S2 | |||
| -------------------------------------------------------------------ATGTACTCTGTCTCTTGAACCCT--------------------------- | 23 | 3 | 5 | - | 1 | |
| -------------------------------------------------------------------ATGTACTCTGTCTCTTGAACCC---------------------------- | 22 | 1 | 1 | - | 2 | |
| ------------------------------------------------------------------GATGTACTCTGTCTCTTGAACCC---------------------------- | 23 | 2 | - | - | - | |
| ----------------------------ACGGGTGGAGACCAGAGTCCG-------------------------------------------------------------------- | 21 | 2 | - | - | - | |
| ------------------------------------------------------------------GATGTACTCTGTCTCTTGAACCCT--------------------------- | 24 | 1 | 1 | - | - | |
| -------------------------------------------------------------------ATGTACTCTGTCTCTTGA-------------------------------- | 18 | - | 1 | 1 | - | |
| ------------------------------------------------------------------GATGTACTCTGTCTCTTG--------------------------------- | 18 | - | - | 1 | - | |
| ------------------------------------------------------------------GATGTACTCTGTCTCTTGA-------------------------------- | 19 | 1 | - | - | - | |
| -----------------------------CGGGTGGAGACCAGAGTCCGT------------------------------------------------------------------- | 21 | - | 1 | - | - | |
| rat | tccattgcctgttttgtggactctgctcACGGGTGGAGACCAGAGTCCGttcttagattattttagGATGTACTCTGTCTCTTGAACCCTagatgtgcgttttggacaaactgatgg | |||||
| ********************************************************************************************************************* | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000009571 ENSRNOG00000007110 LOC500430 | |||||
| rat | .((((((..(((((..((.((((((.....(((((((((.((((((.((.(((((((....))))))))).)))))))))))...)))))))).)).))....)))))...)))))) | 0.880 -34.80 | ||||
| rat | chromosome:5:49104785:49104901:-1 | Same_strand|Intronic_coding|ENSRNOT00000009571|ENSRNOG00000007110 ## ENSRNOG00000007110|protein_coding|LOC500430| |
novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH (4 loci)
block881421 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.489 | no | no | 0.36/0.45 | 18/25/0.75 | 0.0 0.0 | 0.0 0.0 | 4 8 | 0 0 | 2 2 | 0 0 | 28 38 | 4 -6 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.38 0.57 | 3 7 | 24 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------CCACACU-------------------------------------------------------------------------- | 10 | novel | ||
| seed | -----------------------------GCUCAAG------------------------------------------------------------------------------------ | 5 | novel | ||
| seed | -----------------------------------------------------GGAACAU------------------------------------------------------------ | 3 | novel | ||
| seed | -------------------------------------------ACUACAU---------------------------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------CAAGUUU--------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------CUGGAAC-------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------ACAUUCU------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| --------------------------------------TCCACACTACATTCTGGAACA------------------------------------------------------------- | 21 | - | - | 8 | |
| ----------------------------TGCTCAAGTTTCCACACTACA----------------------------------------------------------------------- | 21 | 1 | - | 4 | |
| ----------------------------------------------------TGGAACATAGGAACCATAA------------------------------------------------- | 19 | - | 1 | 1 | |
| ------------------------------------------CACTACATTCTGGAACATAG---------------------------------------------------------- | 20 | - | - | 2 | |
| --------------------------------------------------TCTGGAACATAGGAACCATAAGAAA--------------------------------------------- | 25 | - | - | 1 | |
| --------------------------------------TCCACACTACATTCTGGAAC-------------------------------------------------------------- | 20 | - | - | 1 | |
| --------------------------------------TCCACACTACATTCTGGAA--------------------------------------------------------------- | 19 | - | - | 1 | |
| ----------------------------------------------------TGGAACATAGGAACCATAAGA----------------------------------------------- | 21 | - | - | 1 | |
| ---------------------------------------------TACATTCTGGAACATAGGAACCA---------------------------------------------------- | 23 | - | - | 1 | |
| -------------------------------TCAAGTTTCCACACTACA----------------------------------------------------------------------- | 18 | - | - | 1 | |
| -------------------------------TCAAGTTTCCACACTACAT---------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | agtgttatatatttcaaatacttagcaaTGCTCAAGTTTCCACACTACATTCTGGAACAtaggaaccataagaaatagcgggggaggaagggcatgccgggggaagggcagtgaccactg | ||||
| ************************************************************************************************************************ | |||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||||
| rat | ((((((((...((((.....((..((.((((((...(((((...(((..((((.................)))).)))....)))))..))))))))..)).))))....))))).))). | 0.640 -25.53 | |||
| rat | chromosome:1:129016695:129016814:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
block1600579 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.903 | no | no | 0.37/0.52 | 18/25/0.75 | 0.3 0.8 | 0.0 2.1 | 3 17 | 0 0 | 2 4 | 0 0 | 18 13 | -14 -23 | 5arm_loop_3arm 5arm_loop_3arm | 1 1 | nd nd | 0.50 0.48 | 8 3 | 24 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------ACAACAA------------------------------- | 17 | novel | |||
| seed | ----------------------------AACAAGA----------------------------- | 2 | novel | |||
| seed | -------------------------------AAGAUGC-------------------------- | 2 | novel | |||
| seed | -------------------AGACCAU-------------------------------------- | 2 | novel | |||
| seed | --------------------GACCAUA------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S1 | T5S1 | |||
| -------------------------TACAACAAGATGCACGTTTGTCCC--------------- | 24 | - | - | - | 5 | |
| -------------------------TACAACAAGATGCACGTT--------------------- | 18 | - | - | - | 3 | |
| -------------------------TACAACAAGATGCACGTTTGTC----------------- | 22 | - | - | - | 3 | |
| -------------------------TACAACAAGATGCACGTTT-------------------- | 19 | - | 1 | 1 | - | |
| ------------------------------CAAGATGCACGTTTGTCCCTG------------- | 21 | - | - | - | 2 | |
| -------------------------TACAACAAGATGCACGTTTG------------------- | 20 | - | - | - | 2 | |
| ---------------------------CAACAAGATGCACGTTTGTCCC--------------- | 22 | - | - | - | 2 | |
| ------------------GAGACCATACAACAAGATGCAC------------------------ | 22 | 1 | - | - | 1 | |
| -------------------------TACAACAAGATGCACGTTTGTCC---------------- | 23 | 1 | - | - | - | |
| -------------------AGACCATACAACAAGATGCAC------------------------ | 21 | - | - | - | 1 | |
| -------------------------TACAACAAGATGCACGTTTGTCCCT-------------- | 25 | - | - | - | 1 | |
| rat | ctttcggtgatgagaagggagaccaTACAACAAGATGCACGTTTGTCCCTGcccctgaccagag | |||||
| **************************************************************** | ||||||
| rat | ((((.(((.......(((((((((((........)))...)))..))))).......))))))) | 0.690 -10.44 | ||||
| rat | chromosome:4:164243334:164243397:-1 | intergenic |
block2325016 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.123 | no | no | 0.37/0.43 | 18/25/0.70 | 0.5 0.0 | 0.0 0.5 | 4 6 | 0 0 | 2 3 | 0 0 | 36 19 | -22 3 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.36 0.33 | 5 3 | 10 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------ACCAACC------------------------------- | 6 | novel | |||
| seed | ---------------------------------------UCCCUGU---------------------------------------- | 3 | novel | |||
| seed | -------------------------------------AUUCCCU------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| -----------------------------------------------TACCAACCTTCTGATTCAAG------------------- | 20 | 1 | - | 3 | - | |
| --------------------------------------TTCCCTGTATACCAACCTTCTGA------------------------- | 23 | - | 1 | 2 | - | |
| -----------------------------------------------TACCAACCTTCTGATTCA--------------------- | 18 | - | - | 1 | - | |
| ------------------------------------TATTCCCTGTATACCAACCTTCTGA------------------------- | 25 | - | 1 | - | - | |
| -----------------------------------------------TACCAACCTTCTGATTCAA-------------------- | 19 | - | - | - | 1 | |
| rat | actgagtgaggaaacacaaaatacagacattggttcTATTCCCTGTATACCAACCTTCTGATTCAAGcggtgttctctcaacctgg | |||||
| ************************************************************************************** | ||||||
| rat | .((..(((((..(((((..(((.((((..(((((..(((.....))).)))))...)))))))......)))))..))).))..)) | 0.980 -18.50 | ||||
| rat | chromosome:8:72070284:72070369:-1 | intergenic |
block1093430 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.022 | no | no | 0.47/0.58 | 18/24/0.70 | 0.0 0.0 | 0.0 0.0 | 1 6 | 0 0 | 1 1 | 0 0 | 55 39 | -16 -4 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.63 0.45 | 7 3 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------GGAACUG--------------------------------------------------- | 9 | novel | |
| seed | --------------------------------------------------------GUGUCUG--------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -------------------------------------------------------------TGGAACTGTCCATACCCCTG--------------------------------------- | 20 | - | 6 | |
| -------------------------------------------------------------TGGAACTGTCCATACCCC----------------------------------------- | 18 | - | 1 | |
| -------------------------------------------------------------TGGAACTGTCCATACCCCT---------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------TGTGTCTGGAACTGTCCAT---------------------------------------------- | 19 | 1 | - | |
| -------------------------------------------------------------TGGAACTGTCCATACCCCTGCCCT----------------------------------- | 24 | - | 1 | |
| rat | cgatggccatgcctctttgctgggactttgagggcagctgggaggggaagggggttgtgtcTGGAACTGTCCATACCCCTGccctgactccattgtcccaggacagtttggtagtcttca | |||
| ************************************************************************************************************************ | ||||
| rat | .((.(((..((((...((((((((((..((.((((((..((.(((((....(((..((.......))..)))...))))).))))).)))))..)))))))..)))...))))))).)). | 0.960 -47.50 | ||
| rat | chromosome:20:5535048:5535167:1 | intergenic |
novel_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH (4 loci)
block133885 [novel_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.53/0.57 | 19/21/0.89 | 0.0 | 0.0 | 21 | 0 | 10 | 0 | 11 | 23 | 5arm | 1 | nd | 0.35 | 4 | 28 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ------------CCCUGAG------------------------------------------------------------------------------------------------ | 28 | miR-125a/125b/351 | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------TCCCTGAGACAAGGGCAAAG------------------------------------------------------------------------------------ | 20 | 5 | 3 | - | 2 | 2 | 1 | 1 | 2 | 4 | 3 | |
| -----------TCCCTGAGACAAGGGCAAA------------------------------------------------------------------------------------- | 19 | - | 1 | 1 | - | 1 | - | - | - | - | - | |
| -----------TCCCTGAGACAAGGGCAAAGG----------------------------------------------------------------------------------- | 21 | 1 | 1 | - | - | - | - | - | - | - | - | |
| rat | tacaaacagaaTCCCTGAGACAAGGGCAAAGgcaccacaggtccacagagagccacacagaaggctcatacagatctgtagccacactcgtgcttctgaggcattccaagttgta | |||||||||||
| ******************************************************************************************************************* | ||||||||||||
| ----------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000002350 ENSRNOG00000001724 LOC360728 | |||||||||||
| rat | (((((...((((.(((.(((((.(((....(((...(((((((......(((((........))))).....))))))).)))...))).))..))).))).))))....))))) | 0.940 -34.90 | ||||||||||
| rat | chromosome:11:72333275:72333389:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000002350|ENSRNOG00000001724 ## ENSRNOG00000001724|protein_coding|LOC360728|Putative uncharacterized protein. [Source:UniProtKB/TrEMBL;Acc:Q6TQG0] |
block1697263 [novel_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.37/0.53 | 19/21/0.73 | 0.8 | 1.1 | 13 | 0 | 3 | 0 | 29 | 4 | 3arm | 6 | nd | 0.45 | 4 | 15 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------------AAACACC----------------------------------------- | 8 | novel | ||
| seed | -----------------------------------------------------------------------UAAACAC------------------------------------------ | 3 | novel | ||
| seed | --------------------------------------------------------------------CCUUAAA--------------------------------------------- | 2 | novel | ||
| seed | ----------------------------------------------------------------------------ACCAUCU------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------------CAUCUCU----------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TAAACACCATCTCTGTTCCA----------------------------- | 20 | 3 | - | 5 | |
| ----------------------------------------------------------------------TTAAACACCATCTCTGTTC------------------------------- | 19 | - | - | 3 | |
| -------------------------------------------------------------------TCCTTAAACACCATCTCTGT--------------------------------- | 20 | - | - | 2 | |
| ---------------------------------------------------------------------------CACCATCTCTGTTCCATCCTG------------------------ | 21 | - | - | 1 | |
| -----------------------------------------------------------------------------CCATCTCTGTTCCATCCTG------------------------ | 19 | - | 1 | - | |
| rat | cggctgttctctttgaaatgctaggtcttgatgctcctgaggggtcttcttcagagccttgccgggcTCCTTAAACACCATCTCTGTTCCAtcctggcatttcctttattgaccttgtcc | ||||
| ************************************************************************************************************************ | |||||
| rat | .(((.(((......(((((((((((...((..((....(((((((........((((((....)))))).......))).)))).))..)).))))))))))).......)))...))). | 0.950 -35.08 | |||
| rat | chromosome:4:164795623:164795742:1 | intergenic |
block1787244 [novel_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.30/0.33 | 18/20/0.76 | 0.0 | 0.4 | 37 | 0 | 8 | 0 | 24 | 6 | 3arm | 1 | nd | 0.44 | 4 | 45 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -----------------------------------------------------------UGUAAGU------------------------------------ | 45 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------ATGTAAGTGTGTATGTAGAT------------------------ | 20 | 2 | 5 | 13 | 4 | 8 | 1 | - | 1 | |
| ----------------------------------------------------------ATGTAAGTGTGTATGTAG-------------------------- | 18 | - | 7 | 2 | - | - | - | 1 | - | |
| ----------------------------------------------------------ATGTAAGTGTGTATGTAGA------------------------- | 19 | - | 1 | - | - | - | - | - | - | |
| rat | tgcctgggttacgtggacctgttcatgcgtgtgcagattcatgcacgtggaagttagcATGTAAGTGTGTATGTAGATcagccagaggtcaaccccaggcat | |||||||||
| ****************************************************************************************************** | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041271 ENSRNOG00000005886 RGD1562996_predicted | |||||||||
| rat | ((((((((....((.((((((((..((((((..((....(((((((......))..)))))....))..))))))....)))...))))).)))))))))). | 0.470 -38.30 | ||||||||
| rat | chromosome:5:147984532:147984633:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000007761|ENSRNOG00000005886 ## Same_strand|Intronic_coding|ENSRNOT00000041271|ENSRNOG00000005886 ## ENSRNOG00000005886|protein_coding|RGD1562996_predicted| |
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