other hairpins
novel_lenNOK_Multihit_shortStem_loopOverlap_bulgeHIGH (4 loci)
block2079579 [novel_lenNOK_Multihit_shortStem_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.396 | no | no | 0.61/0.61 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -3 | 5arm_loop | 51 | nd | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----CUACCAC----------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ----GCTACCACATGGCATCCC------------------------------------- | 18 | 1 | |
| rat | ggtgGCTACCACATGGCATCCCtccagcataatgtcatgtaagtgtgcaatgtgtcatc | ||
| *********************************************************** | |||
| rat | (((((((((.(((((((((............)))))))))..)))........)))))) | 0.620 -12.10 |
| rat | chromosome:7:6157963:6158021:-1 | intergenic |
novel_lenNOK_cloningHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (4 loci)
block119716 [novel_lenNOK_cloningHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.53/0.56 | 18/20/0.10 | 0.0 | 0.4 | 56 | 0 | 2 | 0 | 10 | -5 | 5arm_loop | 1 | nd | 0.39 | 5 | 62 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------CCUCACA------------------------------------------------ | 62 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| ----------ACCTCACACTGTGCACACA------------------------------------- | 19 | 24 | 10 | |
| ----------ACCTCACACTGTGCACAC-------------------------------------- | 18 | 10 | 12 | |
| ----------ACCTCACACTGTGCACACAG------------------------------------ | 20 | 4 | 2 | |
| rat | ggggcctcaaACCTCACACTGTGCACACAggtcttcagtaaagtgtgtgatggtgcataagcccca | |||
| ****************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002231 ENSRNOG00000001632 NP_001100576.1 | |||
| rat | (((((.....(((((((((..(((.............)))....)))))).)))......))))). | 0.900 -23.42 | ||
| rat | chromosome:11:36333957:36334022:-1 | Same_strand|Intronic_coding|ENSRNOT00000002231|ENSRNOG00000001632 ## ENSRNOG00000001632|protein_coding|NP_001100576.1|bromodomain and WD repeat domain containing 1 [Source:RefSeq_peptide;Acc:NP_001100576] |
block535353 [novel_lenNOK_cloningHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.20/0.22 | 18/20/0.01 | 0.0 | 0.6 | 162 | 0 | 10 | 0 | 6 | -4 | 5arm_loop | 1 | nd | 0.39 | 4 | 235 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -------AUUAUUA-------------------------------------- | 227 | miR-126* | |||||||||
| seed | --------UUAUUAC------------------------------------- | 7 | novel | |||||||||
| seed | ---------UAUUACU------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------AATTATTACTTTTGGTAC---------------------------- | 18 | 8 | 6 | 15 | 8 | 8 | 6 | 18 | 25 | 17 | 15 | |
| ------AATTATTACTTTTGGTACA--------------------------- | 19 | 4 | 12 | 9 | 5 | 7 | 5 | 10 | 28 | 13 | 5 | |
| -------ATTATTACTTTTGGTACA--------------------------- | 18 | - | - | 1 | 1 | - | - | 1 | 2 | 1 | 1 | |
| ------AATTATTACTTTTGGTACAT-------------------------- | 20 | - | - | - | - | - | - | 1 | 1 | 1 | - | |
| --------TTATTACTTTTGGTACAT-------------------------- | 18 | - | - | - | - | - | - | 1 | - | - | - | |
| rat | agtatcAATTATTACTTTTGGTACAtttctaaaggtagaatcttttgatact | |||||||||||
| **************************************************** | ||||||||||||
| rat | ((((((((...((((((((((.......))))))))))......)))))))) | 1.000 -14.30 | ||||||||||
| rat | chromosome:16:42506736:42506787:-1 | intergenic |
block1500001 [novel_lenNOK_cloningHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.37/0.39 | 18/19/0.00 | 0.0 | 0.0 | 143 | 0 | 10 | 0 | 37 | -4 | 5arm_loop | 1 | nd | 0.42 | 5 | 171 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------GAGGCAG------------------------------------------------------------------------ | 167 | novel | |||||||||
| seed | ---------------------------------------AGGCAGU----------------------------------------------------------------------- | 4 | miR-34b | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------TGAGGCAGTAGATTGTATA------------------------------------------------------------- | 19 | 28 | 11 | 13 | 18 | 21 | 19 | 9 | 24 | 1 | 7 | |
| -------------------------------------TGAGGCAGTAGATTGTAT-------------------------------------------------------------- | 18 | 2 | 5 | 1 | - | 2 | 1 | - | 2 | 1 | 2 | |
| --------------------------------------GAGGCAGTAGATTGTATA------------------------------------------------------------- | 18 | 1 | - | 1 | - | 1 | - | - | - | 1 | - | |
| rat | ttgattcagagtcatatttgaatagagttcagtgtgtTGAGGCAGTAGATTGTATAtcattcttctgcctgagacaagctgtgtaggttgaagtactagtggctattaagagttagg | |||||||||||
| ********************************************************************************************************************* | ||||||||||||
| rat | (((((((..((((((((((.(((......((((.((((.((((((.(((.((.....)).))).))))))..)))).)))).....))).))))....)))))).....))))))). | 0.980 -34.40 | ||||||||||
| rat | chromosome:3:141769407:141769523:1 | intergenic |
block1526887 [novel_lenNOK_cloningHIGH_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 82 | 0 | 10 | 0 | 13 | -3 | 5arm_loop | 1 | nd | 0.44 | 4 | 92 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------CACAUAC---------------------------------------- | 92 | miR-1* | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------TCACATACACAGTGATGG------------------------------ | 18 | 5 | 8 | 3 | 9 | 2 | 9 | 7 | 19 | 13 | 17 | |
| rat | tttgctattagttTCACATACACAGTGATGGaattcattgtgaaatgaaactcaagcaaga | |||||||||||
| ************************************************************* | ||||||||||||
| rat | ((((((...(((((((....((((((((......))))))))...)))))))..)))))). | 1.000 -21.50 | ||||||||||
| rat | chromosome:4:18101896:18101956:-1 | intergenic |
novel_lenNOK_cloningHIGH_mirtron_nonpairedHIGH (4 loci)
block280957 [novel_lenNOK_cloningHIGH_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.305 | no | no | 0.47/0.53 | 18/23/0.69 | 0.0 | 0.2 | 395 | 0 | 10 | 0 | 19 | 8 | 5arm | 1 | 0 | 0.40 | 3 | 730 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------CUAACUC------------------------------------------------------------------------- | 721 | novel | |||||||||
| seed | ---------------------UAACUCC------------------------------------------------------------------------ | 9 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------TCTAACTCCGGCCTTTACAG------------------------------------------------------------- | 20 | 37 | 20 | 34 | 21 | 6 | 21 | 15 | 47 | 105 | 92 | |
| -------------------TCTAACTCCGGCCTTTACA-------------------------------------------------------------- | 19 | 32 | 13 | 6 | 3 | 4 | 6 | 7 | 19 | 48 | 29 | |
| -------------------TCTAACTCCGGCCTTTACAGG------------------------------------------------------------ | 21 | 23 | 4 | 10 | 8 | 1 | 4 | 1 | 7 | 15 | 17 | |
| -------------------TCTAACTCCGGCCTTTAC--------------------------------------------------------------- | 18 | 4 | 6 | 2 | 1 | - | 3 | 2 | 4 | 14 | 12 | |
| -------------------TCTAACTCCGGCCTTTACAGGT----------------------------------------------------------- | 22 | - | 4 | - | - | - | 1 | 4 | - | 4 | 4 | |
| --------------------CTAACTCCGGCCTTTACA-------------------------------------------------------------- | 18 | 3 | - | - | - | - | - | - | - | - | 2 | |
| --------------------CTAACTCCGGCCTTTACAG------------------------------------------------------------- | 19 | 1 | - | 1 | - | - | - | - | - | 1 | 1 | |
| -------------------TCTAACTCCGGCCTTTACAGGTG---------------------------------------------------------- | 23 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | cttcagtgtgtaaccaccgTCTAACTCCGGCCTTTACAGgtgcgtgttgactacagtggacccagacaccggcatcatagacaggaaagagccgctggag | |||||||||||
| **************************************************************************************************** | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000029439 ENSRNOG00000037850 Mosc2 | |||||||||||
| rat | ((((((((.((.....(((((((...((((..(((...(((.(((((.....))).)).))).)))..)))).....))))).)).....)))))))))) | 0.960 -28.60 | ||||||||||
| rat | chromosome:13:100816402:100816501:-1 | Same_strand|Boundary_coding|ENSRNOT00000029439|ENSRNOG00000037850 ## ENSRNOG00000037850|protein_coding|Mosc2|MOCO sulphurase C-terminal domain containing 2 Gene [Source:MGI Symbol;Acc:MGI:1914497] |
block1434066 [novel_lenNOK_cloningHIGH_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.210 | no | no | 0.58/0.64 | 18/22/0.49 | 0.3 | 0.8 | 78 | 0 | 6 | 0 | 8 | 26 | 3arm | 1 | 0 | 0.35 | 3 | 148 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------------------------------------------CUCCUGU--------------------- | 93 | novel | |||||
| seed | ---------------------------------------------------------------------------------------------UCCUGUC-------------------- | 54 | novel | |||||
| seed | -----------------------------------------------------------------------------------------CCCCUCC------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------------------------------CCTCCTGTCTGCCTCACAC---------- | 19 | 28 | 13 | - | 2 | 2 | 6 | |
| --------------------------------------------------------------------------------------------CTCCTGTCTGCCTCACACAG-------- | 20 | 18 | 9 | - | - | 1 | 1 | |
| -------------------------------------------------------------------------------------------CCTCCTGTCTGCCTCACACA--------- | 20 | 10 | 5 | - | - | 2 | 3 | |
| --------------------------------------------------------------------------------------------CTCCTGTCTGCCTCACAC---------- | 18 | 7 | 3 | - | - | 1 | - | |
| -------------------------------------------------------------------------------------------CCTCCTGTCTGCCTCACACAG-------- | 21 | 5 | 5 | - | - | - | - | |
| --------------------------------------------------------------------------------------------CTCCTGTCTGCCTCACACAGC------- | 21 | 4 | 3 | - | - | - | - | |
| --------------------------------------------------------------------------------------------CTCCTGTCTGCCTCACACA--------- | 19 | 3 | 3 | 1 | - | - | - | |
| -------------------------------------------------------------------------------------------CCTCCTGTCTGCCTCACACAGC------- | 22 | 3 | 3 | - | - | - | - | |
| -------------------------------------------------------------------------------------------CCTCCTGTCTGCCTCACA----------- | 18 | 3 | - | - | - | 1 | 2 | |
| ----------------------------------------------------------------------------------------TCCCCTCCTGTCTGCCTCACA----------- | 21 | 1 | - | - | - | - | - | |
| rat | tccgactgcaccggtgagttggcctggaggggctgtgaacgggggtgccgtgccgacggctgcaaggcctcagcacccctcctgcctgtccCCTCCTGTCTGCCTCACACAGctatggag | |||||||
| ************************************************************************************************************************ | ||||||||
| >>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>> | ENSRNOT00000036243 ENSRNOG00000014268 Abca2 | |||||||
| >>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>> | ENSRNOT00000020339 ENSRNOG00000014268 Abca2 | |||||||
| rat | ((((...((....(((((..(((..(((((((.......((((((....((((.((.((((....)))))).))))..)))))).....))))))).)))...)))))...))..)))). | 0.910 -50.20 | ||||||
| rat | chromosome:3:3610348:3610467:1 | Same_strand|Boundary_coding|ENSRNOT00000020339|ENSRNOG00000014268 ## ENSRNOG00000014268|protein_coding|Abca2|ATP-binding cassette sub-family A member 2 (ATP-binding cassette transporter 2) (ATP-binding cassette 2). [Source:UniProtKB/Swiss-Prot;Acc:Q9ESR9] |
block1694865 [novel_lenNOK_cloningHIGH_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.029 | no | no | 0.33/0.37 | 18/19/0.00 | 0.0 | 0.0 | 108 | 0 | 5 | 0 | 6 | 22 | 5arm | 1 | 0 | 0.33 | 3 | 113 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------CUCCAUU-------------------------------------------------------------------- | 113 | miR-136 | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T5S2 | |||
| ------ACTCCATTTGTTTTGTAG---------------------------------------------------------- | 18 | 41 | 67 | 2 | - | 1 | |
| ------ACTCCATTTGTTTTGTAGG--------------------------------------------------------- | 19 | - | 1 | - | 1 | - | |
| rat | gtggctACTCCATTTGTTTTGTAGgaagctcaagaaactctttcggaagctgaaagatgagacagaacctggagaaagtgac | ||||||
| ********************************************************************************** | |||||||
| +++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000032112 ENSRNOG00000023561 Ano2 | ||||||
| rat | ((.(((.(((((...(((((((......((((......((((((((...))))))))))))))))))).)))))..))).)) | 0.870 -22.60 | |||||
| rat | chromosome:4:162336556:162336637:1 | Same_strand|Boundary_coding|ENSRNOT00000032112|ENSRNOG00000023561 ## ENSRNOG00000023561|protein_coding|Ano2|anoctamin 2 Gene [Source:MGI Symbol;Acc:MGI:2387214] |
block2158397 [novel_lenNOK_cloningHIGH_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.577 | no | no | 0.60/0.63 | 18/20/0.01 | 0.0 | 0.0 | 82 | 0 | 3 | 0 | 30 | 0 | 5arm_loop | 1 | 3 | 0.39 | 3 | 90 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------CCUUACG-------------------------------------------------------- | 90 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T4S2 | |||
| ------------------------------TCCTTACGCCCTCCTGCT---------------------------------------------- | 18 | 2 | 30 | 52 | |
| ------------------------------TCCTTACGCCCTCCTGCTC--------------------------------------------- | 19 | - | 3 | 2 | |
| ------------------------------TCCTTACGCCCTCCTGCTCA-------------------------------------------- | 20 | - | - | 1 | |
| rat | gaacgtacatggcttttaaatcccccatatTCCTTACGCCCTCCTGCTcagacgcccagcggacacgtaacatgggaagacctgcggcacgttc | ||||
| ********************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000015447 ENSRNOG00000011094 RGD1309065_predicted | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055945 ENSRNOG00000011094 RGD1309065_predicted | ||||
| rat | ((((((....(((((........(((((.....(((((...(((.(((.........))))))..))))).)))))))).))......)))))) | 0.510 -19.00 | |||
| rat | chromosome:7:121971890:121971983:-1 | Same_strand|Intronic_coding|ENSRNOT00000015447|ENSRNOG00000011094 ## ENSRNOG00000011094|protein_coding|RGD1309065_predicted| |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH (4 loci)
sblock11362 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.33/0.63 | 18/26/0.48 | 0.5 5.0 0.0 0.0 | 0.5 6.7 0.0 0.0 | 2 6 15 13 | 0 0 0 0 | 2 1 4 2 | 0 0 0 0 | 4 10 30 18 | 19 4 15 26 | 5arm 5arm 3arm 3arm | 1 2 2 2 | nd nd nd nd | 0.11 0.12 0.58 0.50 | 2 2 7 5 | 66 | 5 | 7 | -6 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------------------------------AGACAUU------------------------------ | 23 | novel | ||||
| seed | ---------------------------------------------------------------------GGAGCAC----------------------------------------- | 18 | novel | ||||
| seed | --------------------------------------------------------------------UGGAGCA------------------------------------------ | 7 | novel | ||||
| seed | ------------------------------------------------------------------------GCACAUA-------------------------------------- | 5 | novel | ||||
| seed | -----------------------------------------------------------------------AGCACAU--------------------------------------- | 2 | novel | ||||
| seed | --------------GCUUGGA------------------------------------------------------------------------------------------------ | 2 | novel | ||||
| seed | --------------------AGAAUGG------------------------------------------------------------------------------------------ | 2 | novel | ||||
| seed | -----GGCUCUU--------------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------UGGAGAA--------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------GCUCUUC-------------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------UCUGCUU--------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------------------------ACAUUUG---------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------GGGGUUU------------------------------------------------ | 1 | novel | ||||
| seed | -------------------------------------------------------------------------CACAUAU------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | |||
| --------------------------------------------------------------------TGGAGCACATATAGACATT------------------------------ | 19 | - | - | - | - | 15 | |
| -------------------------------------------------------------------------------TAGACATTTGCTAGGTGGTG------------------ | 20 | - | - | 1 | - | 13 | |
| -------------------------------------------------------------------TTGGAGCACATATAGACATTTG---------------------------- | 22 | 1 | 1 | - | - | 4 | |
| -----------------------------------------------------------------------AGCACATATAGACATTTGCT-------------------------- | 20 | - | - | - | - | 4 | |
| -------------------------------------------------------------------------------TAGACATTTGCTAGGTGG-------------------- | 18 | - | - | - | - | 3 | |
| -------------------------------------------------------------------------------TAGACATTTGCTAGGTGGTGGAGAG------------- | 25 | - | - | - | - | 2 | |
| -------------------------------------------------------------------------------TAGACATTTGCTAGGTGGT------------------- | 19 | - | - | - | - | 2 | |
| ----------------------------------------------------------------------GAGCACATATAGACATTTG---------------------------- | 19 | - | - | - | - | 2 | |
| --------------------------------------------------------------------TGGAGCACATATAGACATTT----------------------------- | 20 | - | 1 | - | - | 1 | |
| --------------------------------------------------------------------TGGAGCACATATAGACATTTG---------------------------- | 21 | - | - | - | - | 1 | |
| ----TGGCTCTTCTGCTTGGAGA---------------------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -------------TGCTTGGAGAATGGGTGCAGGCCTC------------------------------------------------------------------------------- | 25 | - | - | - | - | 1 | |
| -------------------------------------------------------------TGGGGTTTGGAGCACATATAGACA-------------------------------- | 24 | - | - | - | - | 1 | |
| -----------------------------------------------------------------------AGCACATATAGACATTTG---------------------------- | 18 | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------TAGACATTTGCTAGGTGGTGGAG--------------- | 23 | - | - | - | - | 1 | |
| -------------TGCTTGGAGAATGGGTGCAG------------------------------------------------------------------------------------ | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------TAGACATTTGCTAGGTGGTGGAGAGG------------ | 26 | - | - | - | - | 1 | |
| -------------------GAGAATGGGTGCAGGCCT-------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | |
| ----------------TTGGAGAATGGGTGCAGGCCTCA------------------------------------------------------------------------------ | 23 | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------GACATTTGCTAGGTGGTG------------------ | 18 | - | - | - | - | 1 | |
| -----GGCTCTTCTGCTTGGAGAA--------------------------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | |
| ------------------------------------------------------------------------GCACATATAGACATTTGCT-------------------------- | 19 | - | - | - | - | 1 | |
| ----------TTCTGCTTGGAGAATGGGT---------------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------GAGAATGGGTGCAGGCCTC------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------------------TTGGAGCACATATAGACATTT----------------------------- | 21 | - | - | - | - | 1 | |
| rat | gaggtggctcttctgcttggagaatgggtgcaggcctcaccagggaaagggagctgggagctggggttTGGAGCACATATAGACATTTGCTAGGTGGTGgagagggaagtggcctca | ||||||
| ********************************************************************************************************************* | |||||||
| rat | (((((.((((((((((((((..((((.((((((((((((((((..........))))....))))))))...)))).......))))..)))))).....)))))..))).))))). | 0.880 -40.40 | |||||
| rat | chromosome:7:112743662:112743778:1 | intergenic |
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