other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH (4 loci)
sblock1966 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.742 | no | no | 0.35/0.62 | 18/25/0.57 | 1.1 0.0 2.1 0.0 | 0.4 0.0 0.0 0.0 | 9 1 24 4 | 0 0 0 0 | 4 1 6 4 | 0 0 0 0 | 9 20 26 20 | 12 4 2 13 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.21 0.43 0.37 0.50 | 2 3 4 8 | 67 | 7 | -6 | -2 |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------AAGCUUC-------------------------------------- | 11 | novel | ||||||
| seed | ------------------------------------------------------AGUACAA------------------------------------------- | 10 | novel | ||||||
| seed | ---------------GUGUUCA---------------------------------------------------------------------------------- | 9 | miR-124* | ||||||
| seed | ----------GCCAUGU--------------------------------------------------------------------------------------- | 7 | novel | ||||||
| seed | -----------------------------------------------------------------CCUAUUC-------------------------------- | 7 | novel | ||||||
| seed | ---------------------------------------------------------ACAAGCU---------------------------------------- | 6 | novel | ||||||
| seed | ------------------------------------------------------------AGCUUCC------------------------------------- | 3 | novel | ||||||
| seed | ------------------------------------------------CAGCCUA------------------------------------------------- | 3 | novel | ||||||
| seed | ---------------------AGACCUA---------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------------------------------ACUGCUA----------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------------------------GAUAACU--------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------AGCCUAG------------------------------------------------ | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------GGUGAUA------------------------ | 1 | novel | ||||||
| seed | -----------------GUUCAGA-------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------CCUAGUA---------------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------UCAGCCU-------------------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------------UCCUAUU--------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------GUACAAG------------------------------------------ | 1 | novel | ||||||
| seed | --------------------------------------------------------UACAAGC----------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| ----------------------------------------------------------CAAGCTTCCTATTCTGGTGA-------------------------- | 20 | - | - | - | 1 | - | 1 | 8 | |
| --------------TGTGTTCAGACCTAGAGAG----------------------------------------------------------------------- | 19 | 2 | - | - | - | 1 | - | 5 | |
| -----------------------------------------------------TAGTACAAGCTTCCTATTCTGGTGA-------------------------- | 25 | - | - | 1 | - | - | - | 7 | |
| --------------------------------------------------------TACAAGCTTCCTATTCTGGTGA-------------------------- | 22 | - | - | - | - | - | - | 6 | |
| ----------------------------------------------------------------TCCTATTCTGGTGATAACTG-------------------- | 20 | - | - | - | - | - | - | 4 | |
| -----------------------------------------------TCAGCCTAGTACAAGCTTC-------------------------------------- | 19 | 1 | - | - | - | - | - | 2 | |
| ---------TGCCATGTGTTCAGACCTAGAG------------------------------------------------------------------------- | 22 | - | - | - | 1 | - | - | 2 | |
| -----------------------------------------------------------AAGCTTCCTATTCTGGTGA-------------------------- | 19 | - | - | - | - | - | - | 3 | |
| ----------------------------------------------------------------TCCTATTCTGGTGATAACT--------------------- | 19 | - | 1 | - | - | - | - | 1 | |
| ---------TGCCATGTGTTCAGACCTAG--------------------------------------------------------------------------- | 20 | 1 | - | - | 1 | - | - | - | |
| -------------------------------------------------------GTACAAGCTTCCTATTCTGGTGA-------------------------- | 23 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------TGATAACTGCTACTGGTACA--------- | 20 | - | - | - | - | - | - | 1 | |
| --------------TGTGTTCAGACCTAGAGA------------------------------------------------------------------------ | 18 | - | - | - | - | - | - | 1 | |
| ---------TGCCATGTGTTCAGACCTAGAGAG----------------------------------------------------------------------- | 24 | - | - | - | - | - | - | 1 | |
| --------------------CAGACCTAGAGAGCTGCAGCC--------------------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | |
| ---------TGCCATGTGTTCAGACCTAGAGA------------------------------------------------------------------------ | 23 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------AGTACAAGCTTCCTATTCTGGTGA-------------------------- | 24 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------GTCAGCCTAGTACAAGCTTC-------------------------------------- | 20 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------TTCCTATTCTGGTGATAACT--------------------- | 20 | - | - | - | - | 1 | - | - | |
| ----------------TGTTCAGACCTAGAGAGC---------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------CAGCCTAGTACAAGCTTCCT------------------------------------ | 20 | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------CAAGCTTCCTATTCTGGTG--------------------------- | 19 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------GCCTAGTACAAGCTTCCTA----------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------TCCTATTCTGGTGATAACTGCTACT--------------- | 25 | 1 | - | - | - | - | - | - | |
| -----------------------------------------------------TAGTACAAGCTTCCTATTCT------------------------------- | 20 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------AACTGCTACTGGTACATGGC----- | 20 | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------TAGTACAAGCTTCCTATTCTGG----------------------------- | 22 | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------TGGTGATAACTGCTACTGGTACA--------- | 23 | - | - | - | - | - | - | 1 | |
| rat | cctcaggcctgccaTGTGTTCAGACCTAGAGAGctgcagccgtggagtcagccTAGTACAAGCTTCCTATTCTGGTGATAACTGctactggtacatggcccagg | ||||||||
| ******************************************************************************************************** | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||||||||
| rat | (((..(((((((((.(((((((((..(((..((((...((...((......))..))...))))..))).)))))........)).)))))))...)))).))) | 0.520 -27.40 | |||||||
| rat | chromosome:1:129031855:129031958:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
sblock6719 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.046 | no | no | 0.43/0.78 | 18/25/0.44 | 0.3 1.6 0.0 0.0 | 0.0 1.2 0.2 2.3 | 22 15 38 3 | 0 0 0 0 | 9 3 2 1 | 0 0 0 0 | 2 20 33 17 | 33 13 8 5 | 5arm 5arm 5arm 3arm | 1 1 1 1 | nd nd nd nd | 0.40 0.38 0.68 0.23 | 5 5 13 3 | 119 | 10 | -3 | 13 |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------GGGAUGA------------------------------------------------------------------- | 43 | novel | |||||||||
| seed | ----CCACAUC------------------------------------------------------------------------------------------------- | 32 | novel | |||||||||
| seed | ---------------------GUCAGAU-------------------------------------------------------------------------------- | 11 | novel | |||||||||
| seed | ----------------------------CCACUUG------------------------------------------------------------------------- | 10 | novel | |||||||||
| seed | ---UCCACAU-------------------------------------------------------------------------------------------------- | 9 | novel | |||||||||
| seed | ----------------------------------------------------------------------CCGACCC------------------------------- | 3 | novel | |||||||||
| seed | -----------------------------CACUUGG------------------------------------------------------------------------ | 3 | novel | |||||||||
| seed | ----------CACCAAA------------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | -----CACAUCA------------------------------------------------------------------------------------------------ | 2 | novel | |||||||||
| seed | ------------CCAAAAC----------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------UGGGAUG-------------------------------------------------------------------- | 1 | miR-30b | |||||||||
| seed | --UUCCACA--------------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------TGGGATGATCAAGGCCTTC-------------------------------------------------------- | 19 | - | 3 | - | - | - | - | - | - | 29 | - | |
| ---TCCACATCACCAAAACCTGTCAGA--------------------------------------------------------------------------------- | 24 | 3 | 4 | 2 | 1 | 1 | 1 | - | 2 | 15 | - | |
| ---------------------------TCCACTTGGGATGATCAAG-------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 9 | 1 | |
| ---------------------------------TGGGATGATCAAGGCCTT--------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 9 | - | |
| --TTCCACATCACCAAAACCTGTCAGA--------------------------------------------------------------------------------- | 25 | - | - | - | 1 | - | - | - | - | 7 | - | |
| --------------------TGTCAGATCCACTTGGGATGA------------------------------------------------------------------- | 21 | - | - | - | - | 2 | - | - | - | 3 | - | |
| ----------------------------CCACTTGGGATGATCAAGG------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 3 | - | |
| --------------------TGTCAGATCCACTTGGGATGATCA---------------------------------------------------------------- | 24 | - | - | - | - | - | - | - | - | 2 | - | |
| ----CCACATCACCAAAACCTGTCAGA--------------------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 1 | 1 | - | |
| --------------------TGTCAGATCCACTTGGGATG-------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 2 | - | |
| ---------TCACCAAAACCTGTCAGATCCAC---------------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 2 | - | |
| ---TCCACATCACCAAAACCTGTCA----------------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | 1 | - | |
| --------------------TGTCAGATCCACTTGGGATGATCAA--------------------------------------------------------------- | 25 | - | - | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------------------------TCCGACCCGGGGAAGGGG--------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TCCGACCCGGGGAAGGGGCTG------------------ | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------TCACCAAAACCTGTCAGATCCACTT-------------------------------------------------------------------------- | 25 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TCCGACCCGGGGAAGGGGCTGA----------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| --TTCCACATCACCAAAACCTGTCA----------------------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------ACCAAAACCTGTCAGATCCACT--------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------TGGGATGATCAAGGCCTTCGGA----------------------------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -CTTCCACATCACCAAAACCTGT------------------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------TGGGATGATCAAGGCCTTCGG------------------------------------------------------ | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| ---TCCACATCACCAAAACCT--------------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| --------------------------------TTGGGATGATCAAGGCCTTC-------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | tctTCCACATCACCAAAACCTGTCAGATCCACTTGGGATGATCAAGGCCTTCggaagctgtgcccagtctccgacccggggaaggggctgatgggaagagtgaggagg | |||||||||||
| ************************************************************************************************************ | ||||||||||||
| rat | .(((((...((((.....((((((((..((.((((((.............(((((..(((....)))..)))))))))))...))..))))))))....))))))))) | 0.530 -40.51 | ||||||||||
| rat | chromosome:20:5512391:5512498:-1 | intergenic |
sblock6734 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.37/0.58 | 18/26/0.34 | 1.4 2.2 1.5 | 1.8 4.0 0.5 | 39 4 2 | 0 0 0 | 8 2 1 | 0 0 0 | 14 35 26 | 18 -22 5 | 5arm_loop 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.25 0.38 0.26 | 3 4 3 | 83 | 8 | 19 | 0 |
| reads | miRBase family seed | |||||||||
| seed | ---------------GCCUCCU---------------------------------------------------------------------------------------------- | 28 | novel | |||||||
| seed | -------------------CCUCUUU------------------------------------------------------------------------------------------ | 16 | novel | |||||||
| seed | ------------------------------------------CCAGUCA------------------------------------------------------------------- | 9 | novel | |||||||
| seed | -------------------------------------------CAGUCAC------------------------------------------------------------------ | 5 | novel | |||||||
| seed | -------------------------------------GCAAUCC------------------------------------------------------------------------ | 5 | novel | |||||||
| seed | --------------GGCCUCC----------------------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | ----------------------------------------------------------GCCGGAA--------------------------------------------------- | 2 | novel | |||||||
| seed | ------------GUGGCCU------------------------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ----------------------------------------AUCCAGU--------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -------------------------UGUGUAU------------------------------------------------------------------------------------ | 1 | novel | |||||||
| seed | ---------------------------------UCCUGCA---------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------------------------CAUGCCG------------------------------------------------------ | 1 | novel | |||||||
| seed | ----------------------CUUUGUG--------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | --------------------------------------------------------------------UCUAGAU----------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------------------------AGAUGUG-------------------------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------UCAUGCC------------------------------------------------------- | 1 | novel | |||||||
| seed | ----UCUUUGC--------------------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------GUAUAUC--------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ------------------UCCUCUU------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | --------------------------------AUCCUGC----------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| --------------GGCCTCCTCTTTGTGTATA----------------------------------------------------------------------------------- | 19 | 1 | 1 | - | - | - | - | 25 | - | |
| ------------------TCCTCTTTGTGTATATCCTG------------------------------------------------------------------------------ | 20 | - | - | - | 1 | - | - | 14 | - | |
| -----------------------------------------TCCAGTCACACCTTCATGC-------------------------------------------------------- | 19 | 3 | - | - | - | - | - | 5 | - | |
| ------------------------------------------CCAGTCACACCTTCATGCC------------------------------------------------------- | 19 | - | - | 1 | - | - | 1 | 3 | - | |
| ------------------------------------TGCAATCCAGTCACACCTTCA----------------------------------------------------------- | 21 | - | - | - | - | - | 1 | 1 | - | |
| ------------------------------------TGCAATCCAGTCACACCTTCAT---------------------------------------------------------- | 22 | - | 1 | - | - | - | - | 1 | - | |
| -------------TGGCCTCCTCTTTGTGTAT------------------------------------------------------------------------------------ | 19 | - | - | - | - | - | - | 2 | - | |
| -----------TGTGGCCTCCTCTTTGTGT-------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| -----------------CTCCTCTTTGTGTATATCCTG------------------------------------------------------------------------------ | 21 | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------TTCATGCCGGAAGCTTCTAG------------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------TCATGCCGGAAGCTTCTAGATGTG-------------------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| --------------------------------ATCCTGCAATCCAGTCACACCTTCA----------------------------------------------------------- | 25 | - | - | - | - | - | - | 1 | - | |
| -------------------------------TATCCTGCAATCCAGTCACACCTTC------------------------------------------------------------ | 25 | - | 1 | - | - | - | - | - | - | |
| ---------------------------------------AATCCAGTCACACCTTCA----------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | |
| ------------------TCCTCTTTGTGTATATCCT------------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | |
| ---------------------------------------------------------TGCCGGAAGCTTCTAGATG---------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------TAGATGTGCAGGAGCTTGG--------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------TGCAATCCAGTCACACCTT------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ---TTCTTTGCTGTGGCCTCCTCTTTGT---------------------------------------------------------------------------------------- | 25 | - | - | - | - | - | - | 1 | - | |
| ---------------------------TGTATATCCTGCAATCCAGTCAC------------------------------------------------------------------ | 23 | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------TTCTAGATGTGCAGGAGCTTGGA-------------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| --------------GGCCTCCTCTTTGTGTATAT---------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -------------TGGCCTCCTCTTTGTGTA------------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| ---------------------TCTTTGTGTATATCCTGCA---------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | |
| -----------------------------------------TCCAGTCACACCTTCATGCCGGA---------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| ------------------------TTGTGTATATCCTGCAATCCAGTCAC------------------------------------------------------------------ | 26 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------AATCCAGTCACACCTTCATG--------------------------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------TGCCGGAAGCTTCTAGATGTGCAG----------------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| rat | catttctttgctgtGGCCTCCTCTTTGTGTATATCCTGcaatccagtcacaccttcatgccggaagcttctagatgtgcaggagcttggaggaggaggaagtaggttcagaactgc | |||||||||
| ******************************************************************************************************************** | ||||||||||
| rat | ((.((((..(((....((((((((((..((...((((((((((.((......((((......))))...)).))).)))))))))...)))))))))).....)))..)))).)). | 0.990 -38.30 | ||||||||
| rat | chromosome:20:5516506:5516621:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH (4 loci)
block1061239 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.122 | no | no | 0.47/0.65 | 18/25/0.59 | 0.0 4.6 0.0 | 0.8 5.0 1.4 | 5 42 14 | 0 0 0 | 1 5 3 | 0 0 0 | 8 18 11 | 0 -12 4 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.32 0.59 0.50 | 3 9 9 | 98 | 5 | 0 | 17 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------GACACAC--------------------------- | 20 | novel | ||||
| seed | --------------------------------AGAUCGG----------------------------------------- | 18 | novel | ||||
| seed | ---------------------AAGUCUC---------------------------------------------------- | 17 | novel | ||||
| seed | -------------------------CUCAGCU------------------------------------------------ | 13 | novel | ||||
| seed | -------------------GGAAGUC------------------------------------------------------ | 9 | novel | ||||
| seed | ---------------------------CAGCUAG---------------------------------------------- | 6 | novel | ||||
| seed | ---------CGGCUCC---------------------------------------------------------------- | 5 | novel | ||||
| seed | ---------------------------------------------UGACACA---------------------------- | 2 | novel | ||||
| seed | -----------------------------------------------ACACACC-------------------------- | 2 | miR-329 | ||||
| seed | -----------------------------------------GCCUUGA-------------------------------- | 1 | novel | ||||
| seed | -------------------------------UAGAUCG------------------------------------------ | 1 | novel | ||||
| seed | --------------------GAAGUCU----------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------UCUCAGC------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------GAUCGGA---------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------CCUUGAC------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | |||
| ------------------------TCTCAGCTAGATCGGATGC------------------------------------- | 19 | - | 2 | 2 | - | 9 | |
| ---------------------------------------------TGACACACCGGATTGTCCTC--------------- | 20 | 2 | - | - | - | 9 | |
| --------------------GAAGTCTCAGCTAGATCGGA---------------------------------------- | 20 | - | - | - | - | 10 | |
| -------------------------------TAGATCGGATGCCTTGACACAC--------------------------- | 22 | - | - | - | - | 10 | |
| ------------------TGGAAGTCTCAGCTAGATC------------------------------------------- | 19 | 1 | - | - | - | 7 | |
| ---------------------------------------------TGACACACCGGATTGTCCTCGAGG----------- | 24 | - | - | - | - | 5 | |
| -------------------------------TAGATCGGATGCCTTGACA------------------------------ | 19 | - | - | - | - | 3 | |
| --------TCGGCTCCGGTGGAAGTCTCAG-------------------------------------------------- | 22 | - | - | - | - | 3 | |
| --------------------------TCAGCTAGATCGGATGCCTTGACAC----------------------------- | 25 | 1 | - | - | - | 2 | |
| --------------------GAAGTCTCAGCTAGATCGGATGCCT----------------------------------- | 25 | 1 | - | - | - | 2 | |
| --------------------GAAGTCTCAGCTAGATCGGAT--------------------------------------- | 21 | - | - | - | - | 3 | |
| -------------------------------TAGATCGGATGCCTTGACAC----------------------------- | 20 | 1 | - | - | - | 2 | |
| ---------------------------------------------TGACACACCGGATTGTCC----------------- | 18 | - | - | - | - | 2 | |
| --------------------------------------------TTGACACACCGGATTGTCCTC--------------- | 21 | - | 1 | - | - | 1 | |
| --------------------------TCAGCTAGATCGGATGCCT----------------------------------- | 19 | - | - | - | - | 2 | |
| --------TCGGCTCCGGTGGAAGTCT----------------------------------------------------- | 19 | - | - | - | - | 1 | |
| --------------------GAAGTCTCAGCTAGATCGG----------------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------TAGATCGGATGCCTTGACACACCG------------------------- | 24 | 1 | - | - | - | - | |
| ------------------TGGAAGTCTCAGCTAGATCGGA---------------------------------------- | 22 | - | - | - | - | 1 | |
| -------------------GGAAGTCTCAGCTAGATCGGA---------------------------------------- | 21 | - | - | - | - | 1 | |
| --------TCGGCTCCGGTGGAAGTCTCAGC------------------------------------------------- | 23 | - | - | - | - | 1 | |
| ----------------------------------------------GACACACCGGATTGTCCTCGAG------------ | 22 | - | - | - | - | 1 | |
| -----------------------GTCTCAGCTAGATCGGATGCC------------------------------------ | 21 | - | - | - | - | 1 | |
| ---------------------------------------------TGACACACCGGATTGTCCTCGA------------- | 22 | - | 1 | - | - | - | |
| ------------------------------CTAGATCGGATGCCTTGACACAC--------------------------- | 23 | 1 | - | - | - | - | |
| -----------------------------------------GCCTTGACACACCGGATTG-------------------- | 19 | 1 | - | - | - | - | |
| ---------------------------------------------TGACACACCGGATTGTCCT---------------- | 19 | - | - | - | - | 1 | |
| --------------------------TCAGCTAGATCGGATGCCTTGAC------------------------------- | 23 | - | - | - | - | 1 | |
| --------------------------------AGATCGGATGCCTTGACACAC--------------------------- | 21 | - | - | - | 1 | - | |
| ----------------------------------------------GACACACCGGATTGTCCTC--------------- | 19 | - | - | - | - | 1 | |
| -------------------------------TAGATCGGATGCCTTGACACA---------------------------- | 21 | - | - | - | - | 1 | |
| ----------------------------------------TGCCTTGACACACCGGATTGTCCTC--------------- | 25 | - | - | - | - | 1 | |
| rat | gagggcttTCGGCTCCGGTGGAAGTCTCAGCTAGATCGGATGCCTTGACACACCGGATTGTCCTCGAGGccaaaaccctc | ||||||
| ******************************************************************************** | |||||||
| rat | (((((.(((.((((((((((...(((...((..........))...))).)))))))...........))).)))))))) | 0.440 -27.70 | |||||
| rat | chromosome:20:5532630:5532709:-1 | intergenic |
block1973115 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.632 | no | no | 0.26/0.42 | 18/25/0.39 | 0.0 6.6 0.0 | 0.0 6.6 0.0 | 1 83 56 | 0 0 0 | 1 6 2 | 0 0 0 | 24 23 12 | 0 -5 10 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.37 0.37 0.55 | 3 3 9 | 184 | 6 | 13 | 0 |
| reads | miRBase family seed | |||||||
| seed | ------------------------------CAUUAUU------------------------------------------------------- | 63 | novel | |||||
| seed | -------------------------------------------------------------GAGACAA------------------------ | 57 | novel | |||||
| seed | ---------------------------------------------------AGGAUGU---------------------------------- | 32 | novel | |||||
| seed | ---------------------------------UAUUAGU---------------------------------------------------- | 9 | novel | |||||
| seed | ------------------------------------------GCAAGUU------------------------------------------- | 4 | novel | |||||
| seed | -------------------------------------AGUCUGC------------------------------------------------ | 3 | novel | |||||
| seed | ------------------------------------UAGUCUG------------------------------------------------- | 3 | novel | |||||
| seed | ----------------------------------------------------------------ACAAAUA--------------------- | 2 | novel | |||||
| seed | ---------------------------------------------------------------GACAAAU---------------------- | 2 | novel | |||||
| seed | ---------------------------------------UCUGCAA---------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------------------ACUGAGA--------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------GGAUGUA--------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------AUAGGAU------------------------------------ | 1 | novel | |||||
| seed | ----------------------------------------CUGCAAG--------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------GAUGUAC-------------------------------- | 1 | novel | |||||
| seed | -------------------------GCCCUCA------------------------------------------------------------ | 1 | novel | |||||
| seed | ------------------------------------------------UAUAGGA------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S2 | T5S1 | |||
| -----------------------------TCATTATTAGTCTGCAAGT-------------------------------------------- | 19 | - | 3 | - | 2 | - | 57 | |
| ------------------------------------------------------------TGAGACAAATATACTAAGGT------------ | 20 | 1 | - | - | - | - | 56 | |
| --------------------------------------------------TAGGATGTACTGAGACAAA----------------------- | 19 | 2 | - | - | - | - | 26 | |
| --------------------------------TTATTAGTCTGCAAGTTAT----------------------------------------- | 19 | - | - | 1 | - | - | 8 | |
| --------------------------------------------------TAGGATGTACTGAGACAAATAT-------------------- | 22 | - | - | - | - | - | 3 | |
| --------------------------------------------------------------AGACAAATATACTAAGGTA----------- | 19 | - | - | - | - | - | 2 | |
| ---------------------------------------------------------------GACAAATATACTAAGGTAT---------- | 19 | - | - | - | - | - | 2 | |
| ------------------------------------TAGTCTGCAAGTTATAGGATGT---------------------------------- | 22 | - | 1 | - | - | - | 1 | |
| --------------------------------------GTCTGCAAGTTATAGGATG----------------------------------- | 19 | - | - | - | - | - | 2 | |
| ----------------------------------------------------GGATGTACTGAGACAAATAT-------------------- | 20 | - | - | - | - | - | 1 | |
| --------------------------------------------------TAGGATGTACTGAGACAAATATAC------------------ | 24 | - | - | - | - | - | 1 | |
| -----------------------------------------TGCAAGTTATAGGATGTACTGAGAC-------------------------- | 25 | - | - | - | - | - | 1 | |
| -----------------------------------------------TTATAGGATGTACTGAGACA------------------------- | 20 | - | - | - | - | - | 1 | |
| -----------------------------TCATTATTAGTCTGCAAGTTA------------------------------------------ | 21 | - | - | - | - | - | 1 | |
| -----------------------------------------TGCAAGTTATAGGATGTACTGAGA--------------------------- | 24 | 1 | - | - | - | - | - | |
| ---------------------------------------TCTGCAAGTTATAGGATGT---------------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------------TATAGGATGTACTGAGACA------------------------- | 19 | 1 | - | - | - | - | - | |
| -----------------------------------------TGCAAGTTATAGGATGTACTGAG---------------------------- | 23 | - | - | - | - | - | 1 | |
| -----------------------------------TTAGTCTGCAAGTTATAGGA------------------------------------- | 20 | 1 | - | - | - | - | - | |
| -----------------------------------------TGCAAGTTATAGGATGTACTG------------------------------ | 21 | 1 | - | - | - | - | - | |
| ------------------------------------TAGTCTGCAAGTTATAGGA------------------------------------- | 19 | 1 | - | - | - | - | - | |
| -----------------------------------TTAGTCTGCAAGTTATAGG-------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ---------------------------------------------------AGGATGTACTGAGACAAA----------------------- | 18 | - | - | - | - | - | 1 | |
| ------------------------TGCCCTCATTATTAGTCTG------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -----------------------------------TTAGTCTGCAAGTTATAGGATGT---------------------------------- | 23 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------TACTGAGACAAATATACTA---------------- | 19 | - | - | - | - | - | 1 | |
| rat | aggaatggagtcacctcaacaaagtgcccTCATTATTAGTCTGCAAGTtaTAGGATGTACTGAGACAAATATACTAAGGTatacccatgtct | |||||||
| ******************************************************************************************** | ||||||||
| rat | ((..((((.((.((((........((..((((.(((...((((.......))))..))).)))).)).........))))..))))))..)) | 0.560 -14.63 | ||||||
| rat | chromosome:6:122563610:122563701:-1 | intergenic |
block1060759 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.156 | no | no | 0.32/0.53 | 18/25/0.62 | 0.0 2.8 0.0 0.2 | 0.0 4.0 0.0 2.0 | 22 13 9 18 | 0 0 0 0 | 5 6 4 5 | 0 0 0 0 | 9 15 31 11 | 6 -16 -12 1 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.55 0.35 0.63 0.37 | 5 3 11 4 | 96 | 10 | 0 | 0 |
| reads | miRBase family seed | |||||||||||
| seed | ----------GCCCCUC----------------------------------------------------------------------- | 29 | novel | |||||||||
| seed | ----------------------------------------------------GGACAUA----------------------------- | 23 | novel | |||||||||
| seed | ----------------CUCAUUG----------------------------------------------------------------- | 17 | novel | |||||||||
| seed | ---------------------------------------GACUCCU------------------------------------------ | 12 | novel | |||||||||
| seed | -----------------------------------------------------GACAUAU---------------------------- | 3 | novel | |||||||||
| seed | -----------------------------AUCCAGU---------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------UGUUUUG------------------------------------------------------------ | 2 | novel | |||||||||
| seed | -----------CCCCUCU---------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -----------------UCAUUGU---------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------CAUUGUU--------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------UCUCAUU------------------------------------------------------------------ | 1 | novel | |||||||||
| seed | -------UCUGCCC-------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------GACUCUG----------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------GUAUCCA------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------TGCCCCTCTCATTGTTTTGT----------------------------------------------------------- | 20 | - | 1 | 3 | - | - | - | - | - | 22 | - | |
| --------------------------------------TGACTCCTGACTCTGGACA------------------------------- | 19 | 1 | - | - | - | - | - | 1 | - | 9 | 1 | |
| ---------------TCTCATTGTTTTGTATCCAG----------------------------------------------------- | 20 | 1 | 1 | - | - | - | 2 | - | 1 | 5 | - | |
| ---------------------------------------------------TGGACATATTCAGAGACCC------------------ | 19 | 2 | - | - | - | 1 | - | - | 2 | 4 | - | |
| ---------------------------------------------------TGGACATATTCAGAGACCCT----------------- | 20 | 1 | - | - | 1 | - | - | - | 1 | 5 | - | |
| ----------------------------------------------------GGACATATTCAGAGACCCTTCCCAA----------- | 25 | - | - | - | - | - | - | - | - | 3 | - | |
| ---------TGCCCCTCTCATTGTTTTG------------------------------------------------------------ | 19 | - | 1 | 1 | - | - | - | - | - | - | 1 | |
| ----------GCCCCTCTCATTGTTTTGT----------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 2 | - | |
| ---------------TCTCATTGTTTTGTATCC------------------------------------------------------- | 18 | - | - | 1 | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------TGGACATATTCAGAGACCCTTCCCA------------ | 25 | - | - | - | - | - | - | - | - | 2 | - | |
| ---------------TCTCATTGTTTTGTATCCAGTCC-------------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------TGGACATATTCAGAGACCCTTCCC------------- | 24 | 1 | - | - | - | - | - | - | - | 1 | - | |
| --------------------TTGTTTTGTATCCAGTCCTGAC---------------------------------------------- | 22 | - | - | - | - | - | - | - | - | 2 | - | |
| ----------------------------TATCCAGTCCTGACTCCTGACTC------------------------------------- | 23 | - | - | - | - | - | - | - | - | 2 | - | |
| ------TTCTGCCCCTCTCATTGTTTTGT----------------------------------------------------------- | 23 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------TGGACATATTCAGAGACCCTTC--------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------TGACTCTGGACATATTCAGAGACCC------------------ | 25 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------CTCATTGTTTTGTATCCAGTCC-------------------------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------TGTATCCAGTCCTGACTCCTGACTC------------------------------------- | 25 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------TGGACATATTCAGAGACCCTTCC-------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------TCTCATTGTTTTGTATCCAGTC--------------------------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------TCTCATTGTTTTGTATCCA------------------------------------------------------ | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| ---------------TCTCATTGTTTTGTATCCAGTCCT------------------------------------------------- | 24 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------TCATTGTTTTGTATCCAGTCC-------------------------------------------------- | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------CTCTCATTGTTTTGTATCCAG----------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | taggccttcTGCCCCTCTCATTGTTTTGTatccagtccTGACTCCTGACTCTGGACAtattcagagacccttcccaaagagggacctg | |||||||||||
| **************************************************************************************** | ||||||||||||
| rat | ((((((((((.....((((..((...(((.(((((...............))))).)))..))))))..........)))))).)))) | 0.430 -19.52 | ||||||||||
| rat | chromosome:20:5516061:5516148:-1 | intergenic |
block1848455 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.325 | no | no | 0.50/0.63 | 18/26/0.48 | 0.0 1.2 | 0.0 0.0 | 1 59 | 0 0 | 1 8 | 0 0 | 6 14 | -1 -24 | 5arm_loop 3arm | 2 2 | nd nd | 0.37 0.45 | 3 4 | 166 | 8 | 0 | 9 |
| reads | miRBase family seed | |||||||||
| seed | ------------------------CCGAUGC------------------------------- | 64 | novel | |||||||
| seed | -----------------------------GCCCAGA-------------------------- | 29 | novel | |||||||
| seed | ---------------GACUUCU---------------------------------------- | 24 | novel | |||||||
| seed | ----------------------CUCCGAU--------------------------------- | 21 | novel | |||||||
| seed | -----------------------------------AUGAUGC-------------------- | 6 | novel | |||||||
| seed | -------------------------------------GAUGCAG------------------ | 5 | novel | |||||||
| seed | --------------------------------CAGAUGA----------------------- | 3 | novel | |||||||
| seed | -------------------------CGAUGCC------------------------------ | 2 | novel | |||||||
| seed | ---------------------------AUGCCCA---------------------------- | 2 | novel | |||||||
| seed | ----------------------------UGCCCAG--------------------------- | 2 | novel | |||||||
| seed | ----------------ACUUCUC--------------------------------------- | 2 | novel | |||||||
| seed | -------------CUGACUU------------------------------------------ | 1 | novel | |||||||
| seed | ----------------------------------------GCAGACA--------------- | 1 | novel | |||||||
| seed | -------GGCCAUC------------------------------------------------ | 1 | novel | |||||||
| seed | -----------------CUUCUCU-------------------------------------- | 1 | novel | |||||||
| seed | ------------------------------CCCAGAU------------------------- | 1 | novel | |||||||
| seed | -------------------UCUCUCC------------------------------------ | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------TCCGATGCCCAGATGATGCAGACAG-------------- | 25 | 2 | 2 | - | 1 | 2 | - | 45 | - | |
| ----------------------------TGCCCAGATGATGCAGACAG-------------- | 20 | 2 | 1 | - | - | - | - | 14 | - | |
| ---------------------TCTCCGATGCCCAGATGATG--------------------- | 20 | - | - | - | - | - | - | 13 | - | |
| --------------TGACTTCTCTCCGATGCCCAGATGA----------------------- | 25 | 1 | - | - | - | 1 | - | 8 | - | |
| --------------TGACTTCTCTCCGATGCCCAGA-------------------------- | 22 | - | 1 | - | - | - | - | 6 | - | |
| ----------------------------TGCCCAGATGATGCAGACA--------------- | 19 | - | - | - | - | - | - | 6 | - | |
| ----------------------------TGCCCAGATGATGCAGACAGCCCC---------- | 24 | - | - | - | - | - | - | 6 | - | |
| --------------TGACTTCTCTCCGATGCCC----------------------------- | 19 | 2 | - | - | - | - | - | 3 | - | |
| ------------------------------------TGATGCAGACAGCCCCACCTCAG--- | 23 | - | - | 1 | - | - | 1 | 2 | - | |
| -----------------------TCCGATGCCCAGATGATGCA------------------- | 20 | - | - | - | - | - | - | 4 | - | |
| -----------------------TCCGATGCCCAGATGATGC-------------------- | 19 | - | - | - | - | - | - | 3 | - | |
| ---------------------TCTCCGATGCCCAGATGATGCAGA----------------- | 24 | 1 | - | - | - | - | - | 2 | - | |
| ---------------------------ATGCCCAGATGATGCAGACA--------------- | 20 | - | - | - | - | - | - | 2 | - | |
| -----------------------TCCGATGCCCAGATGATGCAGA----------------- | 22 | - | - | - | - | - | - | 2 | - | |
| -----------------------TCCGATGCCCAGATGATGCAGAC---------------- | 23 | - | - | - | - | - | - | 2 | - | |
| --------------------------GATGCCCAGATGATGCAGACAG-------------- | 22 | - | - | - | - | - | - | 2 | - | |
| --------------TGACTTCTCTCCGATGCC------------------------------ | 18 | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------GATGATGCAGACAGCCCCACCTCA---- | 24 | - | - | - | - | - | - | 2 | - | |
| ---------------------TCTCCGATGCCCAGATGATGCAG------------------ | 23 | - | - | - | - | - | - | 2 | - | |
| ----------------------------------GATGATGCAGACAGCCCCACC------- | 21 | - | - | - | - | - | - | 2 | - | |
| ----------------------------------GATGATGCAGACAGCCCCAC-------- | 20 | - | - | - | - | - | - | 1 | - | |
| ------------------TTCTCTCCGATGCCCAGATGATG--------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| -----------------------------GCCCAGATGATGCAGACAG-------------- | 19 | - | - | - | - | - | - | 1 | - | |
| -------------------------------CCAGATGATGCAGACAGCC------------ | 19 | - | - | - | - | - | - | 1 | - | |
| ---------------GACTTCTCTCCGATGCCCAGATGA----------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------GATGATGCAGACAGCCCCACCTCAG--- | 25 | - | - | - | - | - | - | 1 | - | |
| ---------------------TCTCCGATGCCCAGATGAT---------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------CCGATGCCCAGATGATGCAGACA--------------- | 23 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------TGATGCAGACAGCCCCACCT------ | 20 | - | - | - | - | - | - | 1 | - | |
| ------------------------CCGATGCCCAGATGATGCAGACAG-------------- | 24 | - | - | - | - | - | - | - | 1 | |
| ---------------------TCTCCGATGCCCAGATGATGCAGAC---------------- | 25 | - | - | - | - | - | - | 1 | - | |
| ------TGGCCATCTGACTTCTCTC------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------TGCAGACAGCCCCACCTCA---- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------TCTGACTTCTCTCCGATGCCCAGA-------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| -------------------------------CCAGATGATGCAGACAGCCCCACCTC----- | 26 | - | - | - | - | - | - | 1 | - | |
| ---------------------TCTCCGATGCCCAGATGA----------------------- | 18 | 1 | - | - | - | - | - | - | - | |
| ---------------GACTTCTCTCCGATGCCCAG--------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| ----------------ACTTCTCTCCGATGCCCAGATGA----------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| -------------------------------CCAGATGATGCAGACAGCCC----------- | 20 | 1 | - | - | - | - | - | - | - | |
| -----------------------TCCGATGCCCAGATGATGCAGACA--------------- | 24 | - | - | - | - | - | - | 1 | - | |
| rat | ggtttgtggccatctgacttctcTCCGATGCCCAGATGATGCAGACAGccccacctcagcca | |||||||||
| ************************************************************** | ||||||||||
| rat | ((((((.(((..((((...(((((.........))).))..))))..))).))....)))). | 0.580 -14.40 | ||||||||
| rat | chromosome:5:79242703:79242764:1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (4 loci)
block97409 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.548 | no | no | 0.32/0.50 | 18/23/0.54 | 0.0 1.5 | 0.0 0.5 | 2 31 | 0 0 | 1 4 | 0 0 | 16 25 | -3 -12 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.50 0.38 | 4 7 | 50 | 4 | 0 | 2 |
| reads | miRBase family seed | |||||
| seed | --------------------------GUUAGAC------------------------------------------ | 20 | novel | |||
| seed | -----------------------------AGACUGU--------------------------------------- | 17 | novel | |||
| seed | ----------------------------------GUCAUAU---------------------------------- | 5 | novel | |||
| seed | ----------------------------UAGACUG---------------------------------------- | 2 | miR-151* | |||
| seed | -----------------UGGAGGC--------------------------------------------------- | 2 | novel | |||
| seed | ---------------------------UUAGACU----------------------------------------- | 1 | novel | |||
| seed | -------------------------------ACUGUCA------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------AUCUAGU----------------------------- | 1 | novel | |||
| seed | ------------------------------------CAUAUCU-------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| -------------------------TGTTAGACTGTCATATCTAGT----------------------------- | 21 | 1 | 1 | 16 | 1 | |
| ----------------------------TAGACTGTCATATCTAGTT---------------------------- | 19 | 1 | - | 15 | - | |
| ----------------CTGGAGGCATGTTAGACTGTCA------------------------------------- | 22 | - | - | 2 | - | |
| ---------------------------------TGTCATATCTAGTTAGGAC----------------------- | 19 | - | - | 2 | - | |
| -----------------------------------TCATATCTAGTTAGGACCC--------------------- | 19 | - | - | 1 | - | |
| ---------------------------------TGTCATATCTAGTTAGGACC---------------------- | 20 | - | - | 1 | - | |
| ---------------------------TTAGACTGTCATATCTAG------------------------------ | 18 | 1 | - | - | - | |
| ---------------------------------TGTCATATCTAGTTAGGACCC--------------------- | 21 | 1 | - | - | - | |
| ---------------------------------TGTCATATCTAGTTAGGA------------------------ | 18 | - | - | 1 | - | |
| --------------------------------------TATCTAGTTAGGACCCGAGGGA--------------- | 22 | - | - | 1 | - | |
| -------------------------TGTTAGACTGTCATATCTAG------------------------------ | 20 | - | - | 1 | - | |
| ----------------------------TAGACTGTCATATCTAGTTAGGA------------------------ | 23 | - | - | 1 | - | |
| ---------------------------TTAGACTGTCATATCTAGT----------------------------- | 19 | - | - | 1 | - | |
| ------------------------------GACTGTCATATCTAGTTAG-------------------------- | 19 | - | - | 1 | - | |
| --------------------------GTTAGACTGTCATATCTAGT----------------------------- | 20 | - | - | 1 | - | |
| rat | tatatgatctctaatcctggaggcaTGTTAGACTGTCATATCTAGTTaggacccgagggataagcaagattttgt | |||||
| *************************************************************************** | ||||||
| rat | .(((.(((((((.(((((...((...(((.(((((.......)))))..)))))..))))).))..))))).))) | 0.660 -14.00 | ||||
| rat | chromosome:10:92625565:92625639:1 | intergenic |
block1973447 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.445 | no | no | 0.30/0.53 | 19/26/0.23 | 3.4 1.2 0.0 | 1.6 2.2 0.0 | 34 4 1 | 0 0 0 | 8 1 1 | 0 0 0 | 32 25 16 | -16 3 13 | 5arm_loop_3arm 3arm 3arm | 2 2 2 | nd nd nd | 0.42 0.47 0.42 | 4 7 5 | 75 | 8 | 4 | 0 |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------GCACUCA----------------------------------------------------------------- | 45 | novel | |||||||
| seed | ----------------------------------------------ACACAAG---------------------------------------------------- | 13 | novel | |||||||
| seed | --------------------------------------------GGACACA------------------------------------------------------ | 9 | novel | |||||||
| seed | --------------------------------------------------------CUAAGUG------------------------------------------ | 3 | novel | |||||||
| seed | -----------------------------UUCUGCA--------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------------------CUGAAGU-------------------------------- | 1 | novel | |||||||
| seed | --------------------------UAUUUCU------------------------------------------------------------------------ | 1 | novel | |||||||
| seed | -------------------------------------------------------------UGAUUCU------------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------------UGGACAC------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------TGCACTCACGTTGGACACAAGTCTCT----------------------------------------------- | 26 | 1 | 1 | 4 | 2 | 1 | - | 3 | 25 | |
| ---------------------------------------------GACACAAGTCTCTAAGTGA----------------------------------------- | 19 | 3 | - | - | 1 | - | - | - | 9 | |
| -------------------------------------------TGGACACAAGTCTCTAAGTGA----------------------------------------- | 21 | - | - | - | - | - | - | 1 | 7 | |
| --------------------------------TGCACTCACGTTGGACACA------------------------------------------------------ | 19 | 1 | - | - | - | - | - | - | 3 | |
| -------------------------------------------------------TCTAAGTGATTCTGAAGTTT------------------------------ | 20 | - | - | - | - | - | - | - | 2 | |
| ------------------------------------------------------------GTGATTCTGAAGTTTGGGA-------------------------- | 19 | - | - | - | - | - | - | - | 1 | |
| ----------------------------TTTCTGCACTCACGTTGGACAC------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| --------------------------------TGCACTCACGTTGGACACAAG---------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------TTGGACACAAGTCTCTAAGTGA----------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------TCTGAAGTTTGGGACTGAGAGACT---------------- | 24 | - | - | - | - | - | - | - | 1 | |
| -------------------------TTATTTCTGCACTCACGTT------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------TCTAAGTGATTCTGAAGTTTGGGAC------------------------- | 25 | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------TGGACACAAGTCTCTAAGTGATTCT------------------------------------- | 25 | - | - | 1 | - | - | - | - | - | |
| --------------------------------TGCACTCACGTTGGACACAAGTC-------------------------------------------------- | 23 | - | - | - | - | - | - | - | 1 | |
| --------------------------------TGCACTCACGTTGGACACAAGT--------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | |
| --------------------------------TGCACTCACGTTGGACACAAGTCT------------------------------------------------- | 24 | - | - | - | - | - | 1 | - | - | |
| rat | atcttggttaaacttaactgacctcttatttcTGCACTCACGTTGGACACAAGTCTCTAAGTGAttctgaagtttgggactgagagactgtcaggtatgctagat | |||||||||
| ********************************************************************************************************* | ||||||||||
| rat | (((.((((.........(((((((((((.(((((.((((((...((((....))))....)))).......)).))))).))))))...)))))....))))))) | 0.930 -22.53 | ||||||||
| rat | chromosome:6:122575143:122575247:-1 | intergenic |
block1600526 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.438 | no | no | 0.33/0.60 | 19/26/0.64 | 0.0 0.0 2.1 | 0.0 0.0 2.4 | 7 15 40 | 0 0 0 | 3 3 5 | 0 0 0 | 14 26 36 | 5 -3 -17 | 5arm 5arm_loop_3arm 3arm_loop | 1 1 2 | nd nd nd | 0.40 0.62 0.65 | 4 5 6 | 87 | 6 | 0 | -4 |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------GAAGCAA------------------------------------------------ | 32 | novel | |||||
| seed | ---------------------------GGAAACG----------------------------------------------------------------------- | 19 | novel | |||||
| seed | -------------------------------------------GACAAAU------------------------------------------------------- | 17 | novel | |||||
| seed | ---------------GCAGCCA----------------------------------------------------------------------------------- | 10 | novel | |||||
| seed | ----------------------------------------------AAAUGAA---------------------------------------------------- | 3 | novel | |||||
| seed | --------------UGCAGCC------------------------------------------------------------------------------------ | 2 | novel | |||||
| seed | -------------------------------------------------UGAAGCA------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------AACGCAG-------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------AAACGCA--------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------AAGCAAC----------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------------------TGAAGCAACAGATATGTGGA------------------------------------ | 20 | - | 1 | - | - | 28 | - | |
| --------------------------TGGAAACGCAGAGCCTTGACA---------------------------------------------------------- | 21 | - | 1 | - | 1 | 15 | - | |
| ------------------------------------------TGACAAATGAAGCAACAGA-------------------------------------------- | 19 | - | - | - | - | 12 | 1 | |
| --------------TGCAGCCAGCCTTGGAAACGCAGAG------------------------------------------------------------------ | 25 | - | - | - | - | 7 | - | |
| ------------------------------------------TGACAAATGAAGCAACAGATATGT--------------------------------------- | 24 | - | - | - | - | 3 | - | |
| --------------TGCAGCCAGCCTTGGAAAC------------------------------------------------------------------------ | 19 | 1 | - | 1 | - | 1 | - | |
| -------------TTGCAGCCAGCCTTGGAAACGCAGAG------------------------------------------------------------------ | 26 | - | - | - | - | 2 | - | |
| ---------------------------------------------CAAATGAAGCAACAGATATGTG-------------------------------------- | 22 | 1 | - | - | - | 1 | - | |
| -------------------------------------------------TGAAGCAACAGATATGTGGATGG--------------------------------- | 23 | - | 1 | - | 1 | - | - | |
| ----------------------------GAAACGCAGAGCCTTGACA---------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ------------------------------------------------ATGAAGCAACAGATATGTG-------------------------------------- | 19 | - | - | - | - | 1 | - | |
| --------------------------TGGAAACGCAGAGCCTTGACAAA-------------------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| -----------------------------AAACGCAGAGCCTTGACAAATGAAG--------------------------------------------------- | 25 | - | - | - | - | 1 | - | |
| -------------------------------------------------TGAAGCAACAGATATGTGGATGGA-------------------------------- | 24 | - | 1 | - | - | - | - | |
| --------------------------------------------------GAAGCAACAGATATGTGGA------------------------------------ | 19 | - | - | - | - | 1 | - | |
| --------------------------TGGAAACGCAGAGCCTTGA------------------------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| ------------------------------------------TGACAAATGAAGCAACAGATATGTG-------------------------------------- | 25 | - | - | - | - | 1 | - | |
| ---------------------------------------------CAAATGAAGCAACAGATATGT--------------------------------------- | 21 | - | - | - | - | 1 | - | |
| rat | cttaagatagtgtttgcagccagcctTGGAAACGCAGAGCCTTGACAAATGAAGCAACAGATATGTGGAtggacaagggaatggcggtatgagtttgtcataagc | |||||||
| ********************************************************************************************************* | ||||||||
| rat | ((((.(((((....(((.((((.(((((....((((.....(((..........)))......))))......)))))...)))).))).....))))).)))). | 0.720 -23.20 | ||||||
| rat | chromosome:4:164241020:164241124:-1 | intergenic |
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©2008 InteRNA Genomics B.V.