other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (4 loci)
sblock7931 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.389 | no | no | 0.32/0.53 | 18/26/0.22 | 0.0 0.0 0.8 0.0 3.6 0.0 | 0.0 0.0 0.3 0.0 3.9 0.0 | 5 2 6 2 16 9 | 0 0 0 0 0 0 | 1 1 3 1 5 5 | 0 0 0 0 0 0 | 0 6 16 27 18 14 | 26 16 5 -1 -21 6 | 5arm 5arm 5arm 5arm_loop 3arm 3arm | 1 1 1 1 2 2 | nd nd nd nd nd nd | 0.42 0.43 0.45 0.32 0.35 0.32 | 5 6 6 3 4 5 | 50 | 6 | -17 | -15 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------------------------------AGCAUUU------------------------- | 19 | novel | |||||
| seed | ------------------------------------------------AGCAGGU------------------------------------ | 7 | novel | |||||
| seed | -CCAUGAA----------------------------------------------------------------------------------- | 5 | novel | |||||
| seed | ----------------------AACACUG-------------------------------------------------------------- | 5 | miR-141/200a | |||||
| seed | ------------------------------------------ACUCGUA------------------------------------------ | 3 | novel | |||||
| seed | -------------------------------------------------------GACUAGC----------------------------- | 3 | novel | |||||
| seed | ----------------------------GAAUUGC-------------------------------------------------------- | 2 | novel | |||||
| seed | -------AGCCUGG----------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------CGUAGCA--------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------UUUUACU---------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------GUGACUA------------------------------- | 1 | novel | |||||
| seed | -----------------AGGAUAA------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------TAGCATTTCTCCCCATCCA-------------- | 19 | 2 | 2 | - | 1 | 9 | - | |
| ---------------------TAACACTGAATTGCTGATT--------------------------------------------------- | 19 | 2 | 1 | - | - | 2 | - | |
| TCCATGAAGCCTGGTTTAG------------------------------------------------------------------------ | 19 | - | - | - | - | 5 | - | |
| -----------------------------------------------TAGCAGGTGACTAGCATTTCTCCCCA------------------ | 26 | - | 1 | - | - | 3 | - | |
| ----------------------------------------------------------TAGCATTTCTCCCCATCCAAC------------ | 21 | 1 | - | - | - | 2 | 1 | |
| ------------------------------------------------------TGACTAGCATTTCTCCCCA------------------ | 19 | 1 | - | - | - | 2 | - | |
| ---------------------------TGAATTGCTGATTTTACTC--------------------------------------------- | 19 | - | - | - | - | 2 | - | |
| ------AAGCCTGGTTTAGGATAACACTG-------------------------------------------------------------- | 23 | - | - | - | - | 2 | - | |
| -----------------------------------------------TAGCAGGTGACTAGCATTTCTCCCC------------------- | 25 | - | - | - | - | 2 | - | |
| ----------------------------------------------------GGTGACTAGCATTTCTCCC-------------------- | 19 | - | - | - | - | 1 | - | |
| -------------------------------------ATTTTACTCGTAGCAGGTGACT-------------------------------- | 22 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------TAGCATTTCTCCCCATCC--------------- | 18 | - | - | - | - | 1 | - | |
| --------------------------------------------TCGTAGCAGGTGACTAGCA---------------------------- | 19 | 1 | - | - | - | - | - | |
| -----------------------------------------TACTCGTAGCAGGTGACTAGCATTT------------------------- | 25 | - | - | - | - | 1 | - | |
| -----------------------------------------TACTCGTAGCAGGTGACTAG------------------------------ | 20 | - | - | 1 | - | - | - | |
| -----------------------------------------TACTCGTAGCAGGTGACTAGCA---------------------------- | 22 | - | - | - | 1 | - | - | |
| ----------------TAGGATAACACTGAATTGCTGA----------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| -----------------------------------------------TAGCAGGTGACTAGCATTTC------------------------ | 20 | - | - | - | - | 1 | - | |
| rat | TCCATGAAGCCTGGTTTAGgataacactgaattgctgattttactcgTAGCAGGTGACTAGCATTTCTCCCCATCCAacaaaaggtcggga | |||||||
| ******************************************************************************************* | ||||||||
| rat | (((.....((((.(((..((((......(((.(((((...(((((.......))))).))))).))).....)))))))...))))..))) | 0.790 -19.60 | ||||||
| rat | chromosome:3:76932877:76932967:1 | intergenic |
novel_lenNOK_cloningHIGH_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH (4 loci)
block647279 [novel_lenNOK_cloningHIGH_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.53/0.56 | 18/19/0.00 | 0.0 | 0.0 | 89 | 0 | 8 | 0 | 0 | 0 | 5arm | 1 | nd | 0.42 | 4 | 94 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -GGGACUC-------------------------------------- | 94 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| TGGGACTCTGGGAAAGGTT--------------------------- | 19 | 21 | 19 | 3 | 1 | 8 | 16 | 16 | 9 | |
| TGGGACTCTGGGAAAGGT---------------------------- | 18 | - | 1 | - | - | - | - | - | - | |
| rat | TGGGACTCTGGGAAAGGTTaaacccaacatctccctaccctcccac | |||||||||
| ********************************************** | ||||||||||
| rat | (((((....((((...(((......)))...)))).....))))). | 1.000 -13.60 | ||||||||
| rat | chromosome:17:18884210:18884255:1 | intergenic |
block838472 [novel_lenNOK_cloningHIGH_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.60/0.67 | 18/22/0.01 | 0.0 | 0.0 | 1510 | 0 | 10 | 0 | 0 | 28 | 5arm | 1 | nd | 0.32 | 5 | 1799 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -GACACCU----------------------------------------------------------------------------------------- | 1592 | novel | |||||||||
| seed | --ACACCUG---------------------------------------------------------------------------------------- | 207 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| TGACACCTGCCACCCAACC------------------------------------------------------------------------------ | 19 | 795 | 715 | 4 | 3 | 4 | 2 | 2 | 4 | 6 | 10 | |
| -GACACCTGCCACCCAACC------------------------------------------------------------------------------ | 18 | 118 | 77 | 1 | 1 | - | - | - | 2 | 2 | 2 | |
| TGACACCTGCCACCCAAC------------------------------------------------------------------------------- | 18 | 21 | 15 | - | 1 | - | - | - | - | - | - | |
| TGACACCTGCCACCCAACCA----------------------------------------------------------------------------- | 20 | 5 | - | - | - | - | - | - | - | - | - | |
| TGACACCTGCCACCCAACCAC---------------------------------------------------------------------------- | 21 | 3 | 1 | - | - | - | - | - | - | - | - | |
| -GACACCTGCCACCCAACCA----------------------------------------------------------------------------- | 19 | - | 3 | - | - | - | - | - | - | - | - | |
| -GACACCTGCCACCCAACCAC---------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| TGACACCTGCCACCCAACCACC--------------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | TGACACCTGCCACCCAACCaccacagaagccacagctctacaatctggttgcttacagagggtgacactttggtttgtgggggctgagcaggagtcg | |||||||||||
| ************************************************************************************************* | ||||||||||||
| ----------------------------------------------------------------------------------------------------------- | ENSRNOT00000022939 ENSRNOG00000017030 Arid1b | |||||||||||
| rat | .(((.((((((((((.....(((((..(((((.((...(((..((((........))))..)))...)).))))))))))))).)).))))).))). | 1.000 -38.30 | ||||||||||
| rat | chromosome:1:40102741:40102837:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000022939|ENSRNOG00000017030 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000041881|ENSRNOG00000017030 ## ENSRNOG00000017030|protein_coding|Arid1b|transcription factor 1 [Source:RefSeq_peptide;Acc:NP_750843] |
block1575901 [novel_lenNOK_cloningHIGH_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.37/0.38 | 19/21/0.04 | 0.0 | 0.0 | 88 | 0 | 6 | 0 | 2 | 31 | 5arm | 8 | nd | 0.47 | 4 | 100 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---ACUUACU---------------------------------------------------------------------------------------------------- | 96 | novel | |||||
| seed | -GUACUUA------------------------------------------------------------------------------------------------------ | 4 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| --TACTTACTCAGGAACAAGA----------------------------------------------------------------------------------------- | 19 | 3 | 1 | 1 | 2 | 1 | 88 | |
| TGTACTTACTCAGGAACAAGA----------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 4 | |
| rat | tgTACTTACTCAGGAACAAGAtatcactgctggttcagcagacaatgaaggatttatttcttcagtcaaaggcagaaaaggcagttttaggggtggggatggaagtacat | |||||||
| ************************************************************************************************************** | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000057494 ENSRNOG00000037844 | |||||||
| rat | (((((((.(((....((....((..((((((..(((.((.(((..(((((((.....))))))))))....)).)))..))))))..))...)).)))....))))))). | 0.990 -32.30 | ||||||
| rat | chromosome:4:120124114:120124223:-1 | Same_strand|Intronic_coding|ENSRNOT00000057494|ENSRNOG00000037844 ## ENSRNOG00000037844|protein_coding|| |
block1810946 [novel_lenNOK_cloningHIGH_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.37/0.40 | 18/20/0.04 | 0.0 | 0.2 | 152 | 0 | 3 | 0 | 2 | 11 | 5arm | 1 | nd | 0.50 | 5 | 179 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---GGAAUGU------------------------------------------------------ | 178 | miR-1/206 | ||
| seed | ----GAAUGUA----------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S1 | T4S2 | |||
| --TGGAATGTAAAGAAAGCCA------------------------------------------- | 19 | - | 43 | 71 | |
| --TGGAATGTAAAGAAAGCC-------------------------------------------- | 18 | 1 | 17 | 38 | |
| --TGGAATGTAAAGAAAGCCAG------------------------------------------ | 20 | - | 4 | 4 | |
| ---GGAATGTAAAGAAAGCCA------------------------------------------- | 18 | - | 1 | - | |
| rat | gtTGGAATGTAAAGAAAGCCAgtctgccatactgaatcctgtatggcaggattcatcgtttcac | ||||
| **************************************************************** | |||||
| rat | ..(((((((....(((......((((((((((........)))))))))).)))..))))))). | 0.950 -20.30 | |||
| rat | chromosome:5:5572749:5572812:1 | intergenic |
novel_lenNOK_cloningOK_5varHIGH_loopOverlap_bulgeHIGH (4 loci)
block1030717 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.067 | no | no | 0.42/0.53 | 18/21/0.13 | 1.9 | 1.4 | 15 | 0 | 6 | 0 | 10 | -3 | 5arm_loop | 1 | nd | 0.28 | 4 | 15 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------------UCAACAG-------------------------------------------- | 7 | novel | |||||
| seed | --------------CCAUCAA----------------------------------------------- | 5 | novel | |||||
| seed | -----------UGGCCAU-------------------------------------------------- | 2 | novel | |||||
| seed | ----------------AUCAACA--------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | |||
| ----------------ATCAACAGTACAGACGAG---------------------------------- | 18 | 3 | 1 | - | 1 | 1 | - | |
| -------------GCCATCAACAGTACAGAC------------------------------------- | 18 | - | - | 2 | - | - | 2 | |
| ----------CTGGCCATCAACAGTACAGAC------------------------------------- | 21 | - | - | 2 | - | - | - | |
| ---------------CATCAACAGTACAGACGAG---------------------------------- | 19 | - | - | - | - | 1 | - | |
| -------------GCCATCAACAGTACAGACG------------------------------------ | 19 | - | - | - | - | 1 | - | |
| ----------------ATCAACAGTACAGACGAGT--------------------------------- | 19 | - | - | - | - | 1 | - | |
| rat | cttttgtctaCTGGCCATCAACAGTACAGACGAGTggtgtctggcaagggttggtgaagtagtttgag | |||||||
| ******************************************************************** | ||||||||
| rat | (((....(((((...(((((((....((((((.....))))))......))))))).)))))...))) | 1.000 -20.60 | ||||||
| rat | chromosome:1:207544570:207544637:1 | intergenic |
block1696611 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.875 | no | no | 0.33/0.50 | 18/22/0.29 | 2.3 | 2.5 | 20 | 0 | 2 | 0 | 10 | -8 | 5arm_loop | 1 | nd | 0.25 | 4 | 21 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------GCAAGAC-------------------------------------------------- | 7 | novel | |
| seed | ------------------UGCAAGA--------------------------------------------------- | 6 | novel | |
| seed | ---------------CCUUGCA------------------------------------------------------ | 5 | novel | |
| seed | -----------AUCUCCU---------------------------------------------------------- | 3 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------TGCAAGACCTCTTATATCC--------------------------------------- | 19 | - | 7 | |
| --------------TCCTTGCAAGACCTCTTAT------------------------------------------- | 19 | 1 | 4 | |
| ----------GATCTCCTTGCAAGACCTCT---------------------------------------------- | 20 | - | 3 | |
| -----------------TTGCAAGACCTCTTATAT----------------------------------------- | 18 | - | 3 | |
| -----------------TTGCAAGACCTCTTATATCCCC------------------------------------- | 22 | - | 3 | |
| rat | cgcccattcaGATCTCCTTGCAAGACCTCTTATATCCCCgcgaagtcaggaaggcaagacaggtttttttccaggc | |||
| **************************************************************************** | ||||
| rat | .(((.....((((((.(((((....((((((...........)))..)))...)))))..)))))).......))) | 0.740 -12.50 | ||
| rat | chromosome:4:164282602:164282677:1 | intergenic |
block2311754 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.074 | no | no | 0.33/0.46 | 18/25/0.60 | 1.2 | 1.2 | 12 | 0 | 3 | 0 | 24 | -2 | 3arm_loop | 1 | nd | 0.29 | 4 | 15 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------ACCAUGA----------------------------------------- | 11 | novel | ||
| seed | ------------------------------------------------------------GAAGAGA------------------------------------ | 3 | novel | ||
| seed | ------------------------------------------------------UACCAUG------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------------TACCATGAAGAGACTAAGACCCACT------------------------ | 25 | - | 1 | 4 | |
| -----------------------------------------------------------TGAAGAGACTAAGACCCACT------------------------ | 20 | - | - | 3 | |
| ------------------------------------------------------TACCATGAAGAGACTAAGACC---------------------------- | 21 | - | - | 3 | |
| ------------------------------------------------------TACCATGAAGAGACTAAGACCCAC------------------------- | 24 | - | - | 2 | |
| ------------------------------------------------------TACCATGAAGAGACTAAGACCC--------------------------- | 22 | 1 | - | - | |
| -----------------------------------------------------TTACCATGAAGAGACTAA-------------------------------- | 18 | - | - | 1 | |
| rat | gttacatttggctaagagttagcttgagagggacagtttctttttgggcaaaatTACCATGAAGAGACTAAGACCCACTaaacccaaaccttatcaacttagc | ||||
| ******************************************************************************************************* | |||||
| rat | ((((...((((.((((.(((......((.(((..(((((((((.(((.........))).)))))))))....))).)).......)))))))))))..)))) | 0.500 -23.32 | |||
| rat | chromosome:8:57730403:57730505:-1 | intergenic |
block1093573 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.354 | no | no | 0.41/0.54 | 18/25/0.53 | 6.6 0.0 | 8.6 0.0 | 16 1 | 0 0 | 2 1 | 0 0 | 33 30 | -22 6 | 3arm 3arm | 1 1 | nd nd | 0.29 0.44 | 4 3 | 17 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------CACUAAU----------------------------------------------------- | 6 | novel | |
| seed | ----------------------------------------------------------------GACGUUC---------------------------------------------- | 3 | novel | |
| seed | -------------------------------------------------CGGUGAC------------------------------------------------------------- | 3 | novel | |
| seed | ----------------------------------------------------UGACUCA---------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------CUUCCAG---------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------GUGACUC----------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------ACCUGCG------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------------------------GCGGTGACTCACTAATGAC-------------------------------------------------- | 19 | - | 3 | |
| --------------------------------------------------------TCACTAATGACGTTCTTCCAGTTGG------------------------------------ | 25 | 1 | 2 | |
| ---------------------------------------------------GTGACTCACTAATGACGTTCT--------------------------------------------- | 21 | - | 2 | |
| ---------------------------------------------------------------TGACGTTCTTCCAGTTGGTCC--------------------------------- | 21 | - | 2 | |
| -------------------------------------------GACCTGCGGTGACTCACTAATGAC-------------------------------------------------- | 24 | - | 1 | |
| --------------------------------------------------------TCACTAATGACGTTCTTCCAGTTG------------------------------------- | 24 | - | 1 | |
| --------------------------------------------------------TCACTAATGACGTTCTTCCAGT--------------------------------------- | 22 | - | 1 | |
| ---------------------------------------------------------------------TCTTCCAGTTGGTCCAAC------------------------------ | 18 | - | 1 | |
| --------------------------------------------------GGTGACTCACTAATGACGT------------------------------------------------ | 19 | - | 1 | |
| --------------------------------------------------------TCACTAATGACGTTCTTCCAG---------------------------------------- | 21 | - | 1 | |
| ---------------------------------------------------------------TGACGTTCTTCCAGTTGGTC---------------------------------- | 20 | - | 1 | |
| rat | gctcctgactttgttggaggccatttcagcatacatggctacaGACCTGCGGTGACTCACTAATGACGTTCTTCCAGTTGGTCCAACattgctgtcagcctctgcattcaaaacgcc | |||
| ********************************************************************************************************************* | ||||
| rat | ((...(((...((.(((((((.....(((((...(((......((((.((((.((((((....))).)))...)).)).))))...))))))))...))))))))).)))....)). | 0.730 -28.30 | ||
| rat | chromosome:20:5540814:5540930:1 | intergenic |
novel_lenNOK_cloningOK_Multihit_nonpairedHIGH_bulgeHIGH (4 loci)
block844594 [novel_lenNOK_cloningOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.346 | no | no | 0.40/0.48 | 19/24/0.43 | 0.3 | 0.0 | 17 | 0 | 2 | 0 | 18 | 2 | 3arm | 26 | nd | 0.40 | 5 | 21 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------ACAGGAU----------------------------- | 12 | novel | |
| seed | --------------------------------------------------UACAGGA------------------------------ | 5 | novel | |
| seed | -------------------------------------------------UUACAGG------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------GGAUCUC-------------------------- | 1 | novel | |
| seed | ------------------------------------------------GUUACAG-------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------ACUGUCU------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------TACAGGATCTCTACTGTCT------------------ | 19 | - | 12 | |
| -------------------------------------------------TTACAGGATCTCTACTGTCT------------------ | 20 | - | 5 | |
| -------------------------------------------------------------TACTGTCTTAGGACCACTGCTGT--- | 23 | - | 1 | |
| -----------------------------------------------------AGGATCTCTACTGTCTTAGGACCA---------- | 24 | 1 | - | |
| -----------------------------------------------GGTTACAGGATCTCTACTGTCT------------------ | 22 | - | 1 | |
| ------------------------------------------------GTTACAGGATCTCTACTGTCT------------------ | 21 | - | 1 | |
| rat | caaagtagtccactgtcaaaggacctccagggtctcagcctctccacggTTACAGGATCTCTACTGTCTtaggaccactgctgttgg | |||
| *************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | |||
| rat | (((((((((.....(((..(((((.....((((((.((((.......))))...)))))).....)))))..))).)))))).))). | 0.710 -21.60 | ||
| rat | chromosome:1:50292150:50292236:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
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